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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMBS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMBS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
0.9
513
Tumor
0.8
777
Tumor
0.7
635
Tumor
0.7
741
Tumor
0.6
517
Tumor
0.6
981
Tumor
0.6
425
Tumor
0.5
465
Tumor
0.5
353
Tumor
0.5
755
Tumor
0.5
615
Tumor
0.5
967
Tumor
0.4
435
Tumor
0.4
977
Tumor
0.4
137
Tumor
0.4
141
Tumor
0.4
391
Tumor
0.4
227
Tumor
0.4
432
Normal
0.4
192
Normal
0.4
473
Tumor
0.4
127
Tumor
0.3
285
Tumor
0.3
1045
Tumor
0.3
533
Tumor
0.3
964
Normal
0.3
387
Tumor
0.3
627
Tumor
0.3
913
Tumor
0.3
423
Tumor
0.3
877
Tumor
0.3
722
Normal
0.3
537
Tumor
0.3
463
Tumor
0.3
487
Tumor
0.2
464
Normal
0.2
477
Tumor
0.2
327
Tumor
0.2
884
Normal
0.2
911
Tumor
0.2
446
Normal
0.2
745
Tumor
0.2
186
Normal
0.2
436
Normal
0.2
1042
Normal
0.2
358
Normal
0.2
1022
Normal
0.2
313
Tumor
0.2
714
Normal
0.2
1027
Tumor
0.2
472
Normal
0.2
925
Tumor
0.2
926
Normal
0.2
431
Tumor
0.2
328
Normal
0.2
944
Normal
0.2
912
Normal
0.2
1046
Normal
0.2
228
Normal
0.2
221
Tumor
0.2
354
Normal
0.2
128
Normal
0.2
196
Normal
0.2
515
Tumor
0.2
427
Tumor
0.2
955
Tumor
0.2
267
Tumor
0.2
147
Tumor
0.2
428
Normal
0.2
756
Normal
0.2
956
Normal
0.2
462
Normal
0.2
351
Tumor
0.2
257
Tumor
0.2
723
Tumor
0.2
484
Normal
0.2
113
Tumor
0.2
357
Tumor
0.2
867
Tumor
0.1
865
Tumor
0.1
546
Normal
0.1
224
Normal
0.1
162
Normal
0.1
858
Normal
0.1
1026
Normal
0.1
746
Normal
0.1
456
Normal
0.1
924
Normal
0.1
1015
Tumor
0.1
938
Normal
0.1
474
Normal
0.1
686
Normal
0.1
361
Tumor
0.1
616
Normal
0.1
142
Normal
0.1
161
Tumor
0.1
481
Tumor
0.1
222
Normal
0.1
262
Normal
0.1
923
Tumor
0.1
558
Normal
0.1
286
Normal
0.1
534
Normal
0.1
132
Normal
0.1
498
Normal
0.1
362
Normal
0.1
461
Tumor
0.1
482
Normal
0.1
443
Tumor
0.1
618
Normal
0.1
344
Normal
0.1
864
Normal
0.1
314
Normal
0.1
523
Tumor
0.1
466
Normal
0.1
738
Normal
0.1
126
Normal
0.1
922
Normal
0.1
388
Normal
0.1
298
Normal
0.1
356
Normal
0.1
696
Normal
0.1
1021
Tumor
0.1
721
Tumor
0.1
172
Normal
0.1
414
Normal
0.1
232
Normal
0.1
352
Normal
0.1
111
Normal
0.1
647
Tumor
0.1
1041
Tumor
0.1
862
Normal
0.1
1032
Normal
0.1
866
Normal
0.1
728
Normal
0.1
416
Normal
0.1
516
Normal
0.1
742
Normal
0.1
648
Normal
0.1
1028
Normal
0.1
957
Tumor
0.1
698
Normal
0.1
1014
Normal
0.1
918
Normal
0.1
451
Tumor
0.1
424
Normal
0.1
978
Normal
0.1
786
Normal
0.1
778
Normal
0.1
966
Normal
0.1
212
Normal
0.1
568
Normal
0.1
716
Normal
0.1
785
Tumor
0.1
332
Normal
0.0
148
Normal
0.0
824
Normal
0.0
816
Normal
0.0
195
Tumor
0.0
815
Tumor
0.0
376
Normal
0.0
937
Tumor
0.0
628
Normal
0.0
535
Tumor
0.0
1016
Normal
0.0
136
Normal
0.0
572
Normal
0.0
968
Normal
0.0
272
Normal
0.0
312
Normal
0.0
426
Normal
0.0
452
Normal
0.0
958
Normal
0.0
365
Tumor
0.0
564
Normal
0.0
868
Normal
0.0
468
Normal
0.0
278
Normal
0.0
217
Tumor
0.0
514
Normal
0.0
488
Normal
0.0
1043
Tumor
0.0
662
Normal
0.0
817
Tumor
0.0
394
Normal
0.0
518
Normal
0.0
123
Tumor
0.0
342
Normal
0.0
663
Tumor
0.0
1044
Normal
0.0
818
Normal
0.0
697
Tumor
0.0
982
Normal
0.0
852
Normal
0.0
665
Tumor
0.0
386
Normal
0.0
364
Normal
0.0
433
Tumor
0.0
368
Normal
0.0
284
Normal
0.0
448
Normal
0.0
1031
Tumor
0.0
366
Normal
0.0
536
Normal
0.0
258
Normal
0.0
954
Normal
0.0
914
Normal
0.0
882
Normal
0.0
494
Normal
0.0
218
Normal
0.0
878
Normal
0.0
393
Tumor
0.0
1013
Tumor
0.0
231
Tumor
0.0
455
Tumor
0.0
434
Normal
0.0
554
Normal
0.0
642
Normal
0.0
528
Normal
0.0
952
Normal
0.0
861
Tumor
-0.1
467
Tumor
-0.1
422
Normal
-0.1
715
Tumor
-0.1
984
Normal
-0.1
478
Normal
-0.1
527
Tumor
-0.1
412
Normal
-0.1
413
Tumor
-0.1
685
Tumor
-0.1
953
Tumor
-0.1
553
Tumor
-0.1
664
Normal
-0.1
268
Normal
-0.1
188
Normal
-0.1
114
Normal
-0.1
341
Tumor
-0.1
526
Normal
-0.1
124
Normal
-0.1
563
Tumor
-0.1
261
Tumor
-0.1
445
Tumor
-0.1
737
Tumor
-0.1
666
Normal
-0.1
367
Tumor
-0.1
636
Normal
-0.1
976
Normal
-0.1
185
Tumor
-0.1
617
Tumor
-0.1
963
Tumor
-0.1
524
Normal
-0.1
125
Tumor
-0.1
375
Tumor
-0.1
411
Tumor
-0.1
392
Normal
-0.1
271
Tumor
-0.1
187
Tumor
-0.1
214
Normal
-0.1
874
Normal
-0.1
191
Tumor
-0.1
851
Tumor
-0.1
915
Tumor
-0.1
471
Tumor
-0.1
671
Tumor
-0.2
916
Normal
-0.2
384
Normal
-0.2
415
Tumor
-0.2
138
Normal
-0.2
444
Normal
-0.2
497
Tumor
-0.2
396
Normal
-0.2
951
Tumor
-0.2
573
Tumor
-0.2
213
Tumor
-0.2
538
Normal
-0.2
661
Tumor
-0.2
574
Normal
-0.2
943
Tumor
-0.2
421
Tumor
-0.2
146
Normal
-0.2
641
Tumor
-0.2
921
Tumor
-0.2
363
Tumor
-0.2
135
Tumor
-0.2
277
Tumor
-0.2
525
Tumor
-0.2
744
Normal
-0.2
145
Tumor
-0.2
331
Tumor
-0.2
857
Tumor
-0.2
713
Tumor
-0.2
873
Tumor
-0.3
493
Tumor
-0.3
695
Tumor
-0.3
823
Tumor
-0.3
917
Tumor
-0.3
311
Tumor
-0.3
1025
Tumor
-0.3
814
Normal
-0.3
483
Tumor
-0.3
557
Tumor
-0.3
171
Tumor
-0.3
672
Normal
-0.3
131
Tumor
-0.3
571
Tumor
-0.3
283
Tumor
-0.3
297
Tumor
-0.3
355
Tumor
-0.3
724
Normal
-0.4
492
Normal
-0.4
447
Tumor
-0.4
983
Tumor
-0.4
965
Tumor
-0.4
975
Tumor
-0.4
385
Tumor
-0.4
567
Tumor
-0.4
881
Tumor
-0.4
395
Tumor
-0.4
743
Tumor
-0.4
813
Tumor
-0.4
383
Tumor
-0.5
223
Tumor
-0.5
211
Tumor
-0.5
112
Tumor
-0.5
343
Tumor
-0.6
545
Tumor
-0.6
883
Tumor
-0.7
491
Tumor
-0.8
727
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
