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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKDC is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKDC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
1.0
743
Tumor
0.9
285
Tumor
0.9
331
Tumor
0.9
877
Tumor
0.9
497
Tumor
0.9
567
Tumor
0.8
427
Tumor
0.8
965
Tumor
0.8
635
Tumor
0.8
313
Tumor
0.7
671
Tumor
0.7
685
Tumor
0.7
375
Tumor
0.7
385
Tumor
0.7
533
Tumor
0.7
425
Tumor
0.7
557
Tumor
0.6
1021
Tumor
0.6
123
Tumor
0.6
112
Tumor
0.6
537
Tumor
0.6
131
Tumor
0.6
817
Tumor
0.5
517
Tumor
0.5
185
Tumor
0.5
865
Tumor
0.5
277
Tumor
0.5
395
Tumor
0.5
443
Tumor
0.5
413
Tumor
0.4
975
Tumor
0.4
571
Tumor
0.4
127
Tumor
0.4
527
Tumor
0.4
343
Tumor
0.4
473
Tumor
0.4
523
Tumor
0.4
665
Tumor
0.4
641
Tumor
0.4
125
Tumor
0.4
355
Tumor
0.4
351
Tumor
0.4
463
Tumor
0.4
727
Tumor
0.4
715
Tumor
0.4
283
Tumor
0.4
957
Tumor
0.4
387
Tumor
0.4
951
Tumor
0.4
881
Tumor
0.4
231
Tumor
0.4
471
Tumor
0.3
421
Tumor
0.3
573
Tumor
0.3
937
Tumor
0.3
161
Tumor
0.3
211
Tumor
0.3
187
Tumor
0.3
467
Tumor
0.3
977
Tumor
0.3
813
Tumor
0.3
411
Tumor
0.3
983
Tumor
0.3
663
Tumor
0.3
257
Tumor
0.3
491
Tumor
0.3
883
Tumor
0.3
724
Normal
0.3
341
Tumor
0.3
967
Tumor
0.3
1031
Tumor
0.2
221
Tumor
0.2
433
Tumor
0.2
697
Tumor
0.2
191
Tumor
0.2
137
Tumor
0.2
141
Tumor
0.2
487
Tumor
0.2
423
Tumor
0.2
383
Tumor
0.2
297
Tumor
0.2
851
Tumor
0.2
465
Tumor
0.2
435
Tumor
0.2
271
Tumor
0.2
461
Tumor
0.2
147
Tumor
0.2
823
Tumor
0.2
391
Tumor
0.2
1013
Tumor
0.2
867
Tumor
0.2
737
Tumor
0.2
113
Tumor
0.2
393
Tumor
0.2
917
Tumor
0.1
615
Tumor
0.1
873
Tumor
0.1
815
Tumor
0.1
135
Tumor
0.1
493
Tumor
0.1
477
Tumor
0.1
963
Tumor
0.1
545
Tumor
0.1
1025
Tumor
0.1
535
Tumor
0.1
814
Normal
0.1
925
Tumor
0.1
921
Tumor
0.1
451
Tumor
0.1
447
Tumor
0.1
213
Tumor
0.1
943
Tumor
0.1
361
Tumor
0.1
455
Tumor
0.1
695
Tumor
0.1
563
Tumor
0.1
525
Tumor
0.1
515
Tumor
0.1
431
Tumor
0.0
363
Tumor
0.0
353
Tumor
0.0
1027
Tumor
0.0
913
Tumor
0.0
745
Tumor
0.0
777
Tumor
0.0
227
Tumor
0.0
861
Tumor
0.0
513
Tumor
0.0
785
Tumor
0.0
223
Tumor
0.0
171
Tumor
0.0
195
Tumor
0.0
365
Tumor
0.0
483
Tumor
0.0
647
Tumor
0.0
267
Tumor
0.0
1041
Tumor
0.0
357
Tumor
0.0
911
Tumor
0.0
713
Tumor
0.0
923
Tumor
-0.1
1015
Tumor
-0.1
553
Tumor
-0.1
953
Tumor
-0.1
261
Tumor
-0.1
661
Tumor
-0.1
741
Tumor
-0.1
145
Tumor
-0.1
857
Tumor
-0.1
1045
Tumor
-0.2
863
Tumor
-0.2
1043
Tumor
-0.2
268
Normal
-0.2
627
Tumor
-0.2
434
Normal
-0.2
217
Tumor
-0.2
444
Normal
-0.2
311
Tumor
-0.2
617
Tumor
-0.2
915
Tumor
-0.2
445
Tumor
-0.2
124
Normal
-0.2
192
Normal
-0.2
314
Normal
-0.2
744
Normal
-0.2
981
Tumor
-0.2
384
Normal
-0.2
272
Normal
-0.3
126
Normal
-0.3
415
Tumor
-0.3
114
Normal
-0.3
362
Normal
-0.3
188
Normal
-0.3
492
Normal
-0.3
376
Normal
-0.3
298
Normal
-0.3
414
Normal
-0.3
386
Normal
-0.3
426
Normal
-0.3
368
Normal
-0.3
278
Normal
-0.3
312
Normal
-0.3
111
Normal
-0.3
146
Normal
-0.3
392
Normal
-0.3
662
Normal
-0.3
984
Normal
-0.3
394
Normal
-0.3
481
Tumor
-0.3
428
Normal
-0.3
388
Normal
-0.3
366
Normal
-0.3
344
Normal
-0.3
396
Normal
-0.3
432
Normal
-0.3
422
Normal
-0.3
636
Normal
-0.3
332
Normal
-0.3
686
Normal
-0.3
258
Normal
-0.3
138
Normal
-0.3
352
Normal
-0.3
172
Normal
-0.3
284
Normal
-0.3
534
Normal
-0.3
478
Normal
-0.3
538
Normal
-0.3
462
Normal
-0.3
342
Normal
-0.3
742
Normal
-0.3
262
Normal
-0.3
132
Normal
-0.3
148
Normal
-0.3
162
Normal
-0.3
136
Normal
-0.3
498
Normal
-0.3
456
Normal
-0.3
196
Normal
-0.3
648
Normal
-0.3
464
Normal
-0.3
424
Normal
-0.3
516
Normal
-0.3
128
Normal
-0.4
664
Normal
-0.4
878
Normal
-0.4
356
Normal
-0.4
966
Normal
-0.4
628
Normal
-0.4
186
Normal
-0.4
232
Normal
-0.4
436
Normal
-0.4
964
Normal
-0.4
824
Normal
-0.4
224
Normal
-0.4
212
Normal
-0.4
526
Normal
-0.4
524
Normal
-0.4
738
Normal
-0.4
916
Normal
-0.4
1016
Normal
-0.4
446
Normal
-0.4
466
Normal
-0.4
914
Normal
-0.4
666
Normal
-0.4
874
Normal
-0.4
574
Normal
-0.4
286
Normal
-0.4
786
Normal
-0.4
976
Normal
-0.4
564
Normal
-0.4
468
Normal
-0.4
488
Normal
-0.4
214
Normal
-0.4
968
Normal
-0.4
474
Normal
-0.4
778
Normal
-0.4
358
Normal
-0.4
696
Normal
-0.4
618
Normal
-0.4
472
Normal
-0.4
218
Normal
-0.4
222
Normal
-0.4
924
Normal
-0.4
568
Normal
-0.4
866
Normal
-0.4
484
Normal
-0.4
412
Normal
-0.4
228
Normal
-0.4
954
Normal
-0.4
142
Normal
-0.4
452
Normal
-0.4
755
Tumor
-0.4
482
Normal
-0.4
354
Normal
-0.4
912
Normal
-0.4
518
Normal
-0.4
944
Normal
-0.4
858
Normal
-0.4
882
Normal
-0.4
978
Normal
-0.4
884
Normal
-0.4
494
Normal
-0.4
922
Normal
-0.4
746
Normal
-0.4
818
Normal
-0.4
1014
Normal
-0.4
528
Normal
-0.4
546
Normal
-0.4
672
Normal
-0.4
958
Normal
-0.4
728
Normal
-0.4
938
Normal
-0.4
864
Normal
-0.4
1028
Normal
-0.4
756
Normal
-0.4
616
Normal
-0.4
716
Normal
-0.4
723
Tumor
-0.5
554
Normal
-0.5
642
Normal
-0.5
982
Normal
-0.5
952
Normal
-0.5
714
Normal
-0.5
852
Normal
-0.5
364
Normal
-0.5
816
Normal
-0.5
918
Normal
-0.5
328
Normal
-0.5
536
Normal
-0.5
514
Normal
-0.5
868
Normal
-0.5
416
Normal
-0.5
862
Normal
-0.5
448
Normal
-0.5
558
Normal
-0.5
1026
Normal
-0.5
572
Normal
-0.5
722
Normal
-0.5
1032
Normal
-0.5
926
Normal
-0.5
1042
Normal
-0.5
698
Normal
-0.5
955
Tumor
-0.5
1022
Normal
-0.5
956
Normal
-0.5
1044
Normal
-0.6
1046
Normal
-0.6
327
Tumor
-0.7
721
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
