We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SELENOP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1187.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6584.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5626.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5586.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4924.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4287.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4029.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3781.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3715.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3619.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3495.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3486.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3289.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3160.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3089.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2970.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2949.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2880.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2861.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2857.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2846.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2841.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2801.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2789.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2708.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2701.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2551.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2519.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2501.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2499.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2436.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2419.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2355.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2342.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2317.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2276.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2261.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2250.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2248.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2242.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2219.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2211.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2200.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2185.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2184.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2181.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2173.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2173.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2166.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2166.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2155.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2148.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2105.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2078.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2035.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2033.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2024.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1949.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1942.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1938.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1920.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1895.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1879.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1870.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1845.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1818.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1812.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1810.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1800.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1775.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1759.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1723.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1719.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1719.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1689.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1681.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1646.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1643.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1637.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1633.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1628.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1607.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1605.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1603.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1596.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1591.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1582.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1577.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1549.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1547.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1542.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1538.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1527.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1516.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1509.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1504.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1497.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1487.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1484.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1480.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1480.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1479.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1471.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1423.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1422.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1405.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1404.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1399.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1399.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1393.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1383.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1377.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1367.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1366.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1361.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1341.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1333.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1328.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1317.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1316.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1295.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1288.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1284.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1277.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1271.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1269.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1258.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1244.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1244.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1239.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1236.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1235.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1234.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1230.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1220.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1217.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1212.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1208.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1207.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1204.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1183.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1170.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1168.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1168.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1167.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1167.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1166.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1158.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1151.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1128.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1127.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1125.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1118.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1114.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1113.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1105.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1099.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1095.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1093.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1092.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1091.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1091.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1091.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1084.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1081.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1075.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1072.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1062.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1061.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1056.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1037.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1030.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1027.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1027.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1026.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1025.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1022.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1017.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1013.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1009.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1004.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1003.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1003.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1000.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
989.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
983.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
980.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
972.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
972.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
954.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
952.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
948.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
947.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
941.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
941.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
940.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
936.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
930.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
922.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
922.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
915.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
911.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
908.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
906.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
906.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
899.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
893.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
877.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
874.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
870.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
869.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
863.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
859.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
859.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
858.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
851.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
847.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
833.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
831.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
828.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
821.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
816.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
814.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
809.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
800.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
785.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
771.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
771.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
767.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
767.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
766.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
757.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
752.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
750.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
747.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
741.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
738.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
735.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
730.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
728.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
727.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
721.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
714.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
714.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
712.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
708.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
707.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
705.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
703.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
701.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
688.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
681.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
680.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
671.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
663.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
654.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
643.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
633.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
630.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
625.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
615.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
606.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
601.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
599.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
596.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
589.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
588.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
588.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
585.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
566.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
554.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
537.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
534.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
534.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
534.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
530.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
529.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
527.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
526.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
521.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
513.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
513.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
510.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
510.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
503.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
498.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
496.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
490.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
485.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
485.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
475.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
473.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
468.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
465.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
455.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
449.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
446.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
444.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
437.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
436.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
431.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
421.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
412.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
403.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
392.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
390.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
380.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
379.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
378.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
371.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
363.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
362.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
358.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
355.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
353.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
340.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
335.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
335.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
330.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
321.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
316.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
315.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
314.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
302.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
298.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
286.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
280.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
266.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
251.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
244.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
242.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
240.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
233.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
227.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
221.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
217.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
201.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
199.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
198.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
197.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
195.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
182.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
180.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
174.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
173.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
168.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
152.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
137.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
136.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
133.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
129.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
123.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
110.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
77.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
73.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
63.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
62.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
49.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.2
425
Tumor
1.2
877
Tumor
1.0
636
Normal
1.0
192
Normal
1.0
671
Tumor
1.0
343
Tumor
1.0
666
Normal
0.9
375
Tumor
0.9
125
Tumor
0.8
743
Tumor
0.8
354
Normal
0.8
618
Normal
0.7
568
Normal
0.7
635
Tumor
0.7
516
Normal
0.7
742
Normal
0.7
924
Normal
0.7
224
Normal
0.7
715
Tumor
0.7
564
Normal
0.6
393
Tumor
0.6
953
Tumor
0.6
1045
Tumor
0.6
815
Tumor
0.6
444
Normal
0.6
628
Normal
0.6
648
Normal
0.6
484
Normal
0.6
785
Tumor
0.5
672
Normal
0.5
396
Normal
0.5
574
Normal
0.5
697
Tumor
0.5
786
Normal
0.5
914
Normal
0.5
627
Tumor
0.5
222
Normal
0.5
563
Tumor
0.5
662
Normal
0.5
432
Normal
0.5
616
Normal
0.5
394
Normal
0.4
975
Tumor
0.4
723
Tumor
0.4
741
Tumor
0.4
922
Normal
0.4
128
Normal
0.4
857
Tumor
0.4
615
Tumor
0.4
911
Tumor
0.4
342
Normal
0.4
567
Tumor
0.4
818
Normal
0.4
328
Normal
0.4
517
Tumor
0.4
278
Normal
0.4
862
Normal
0.4
716
Normal
0.4
938
Normal
0.4
466
Normal
0.4
744
Normal
0.4
954
Normal
0.4
297
Tumor
0.4
221
Tumor
0.3
358
Normal
0.3
188
Normal
0.3
722
Normal
0.3
1042
Normal
0.3
546
Normal
0.3
746
Normal
0.3
518
Normal
0.3
483
Tumor
0.3
162
Normal
0.3
114
Normal
0.3
472
Normal
0.3
388
Normal
0.3
713
Tumor
0.3
126
Normal
0.3
362
Normal
0.3
258
Normal
0.3
813
Tumor
0.3
824
Normal
0.3
366
Normal
0.3
298
Normal
0.3
462
Normal
0.3
196
Normal
0.3
228
Normal
0.3
918
Normal
0.3
921
Tumor
0.3
492
Normal
0.3
195
Tumor
0.3
468
Normal
0.3
111
Normal
0.3
515
Tumor
0.3
138
Normal
0.3
124
Normal
0.3
146
Normal
0.3
172
Normal
0.3
436
Normal
0.3
461
Tumor
0.3
341
Tumor
0.3
214
Normal
0.3
858
Normal
0.3
474
Normal
0.3
456
Normal
0.3
1022
Normal
0.3
365
Tumor
0.3
866
Normal
0.2
714
Normal
0.2
817
Tumor
0.2
132
Normal
0.2
391
Tumor
0.2
376
Normal
0.2
868
Normal
0.2
816
Normal
0.2
756
Normal
0.2
572
Normal
0.2
534
Normal
0.2
881
Tumor
0.2
981
Tumor
0.2
958
Normal
0.2
161
Tumor
0.2
127
Tumor
0.2
186
Normal
0.2
1044
Normal
0.2
112
Tumor
0.2
314
Normal
0.2
268
Normal
0.2
356
Normal
0.2
136
Normal
0.2
1041
Tumor
0.2
558
Normal
0.2
426
Normal
0.2
686
Normal
0.2
696
Normal
0.2
218
Normal
0.2
944
Normal
0.2
217
Tumor
0.2
395
Tumor
0.2
232
Normal
0.2
352
Normal
0.2
353
Tumor
0.2
926
Normal
0.2
852
Normal
0.2
223
Tumor
0.2
956
Normal
0.1
464
Normal
0.1
187
Tumor
0.1
471
Tumor
0.1
641
Tumor
0.1
148
Normal
0.1
647
Tumor
0.1
312
Normal
0.1
1028
Normal
0.1
863
Tumor
0.1
545
Tumor
0.1
414
Normal
0.1
882
Normal
0.1
386
Normal
0.1
384
Normal
0.1
617
Tumor
0.1
1046
Normal
0.1
915
Tumor
0.1
327
Tumor
0.1
478
Normal
0.1
874
Normal
0.1
428
Normal
0.1
698
Normal
0.1
664
Normal
0.1
728
Normal
0.1
191
Tumor
0.1
538
Normal
0.1
778
Normal
0.1
1032
Normal
0.1
145
Tumor
0.1
227
Tumor
0.1
642
Normal
0.1
916
Normal
0.1
864
Normal
0.1
465
Tumor
0.1
272
Normal
0.1
491
Tumor
0.1
261
Tumor
0.1
286
Normal
0.1
695
Tumor
0.1
738
Normal
0.1
113
Tumor
0.1
573
Tumor
0.1
267
Tumor
0.0
142
Normal
0.0
368
Normal
0.0
185
Tumor
0.0
171
Tumor
0.0
412
Normal
0.0
526
Normal
0.0
937
Tumor
0.0
823
Tumor
0.0
923
Tumor
0.0
976
Normal
0.0
481
Tumor
0.0
514
Normal
0.0
967
Tumor
0.0
392
Normal
0.0
344
Normal
0.0
431
Tumor
0.0
284
Normal
0.0
957
Tumor
0.0
262
Normal
0.0
878
Normal
0.0
364
Normal
0.0
313
Tumor
0.0
446
Normal
0.0
137
Tumor
0.0
361
Tumor
0.0
455
Tumor
0.0
982
Normal
0.0
966
Normal
0.0
482
Normal
-0.1
435
Tumor
-0.1
1026
Normal
-0.1
424
Normal
-0.1
884
Normal
-0.1
943
Tumor
-0.1
467
Tumor
-0.1
1043
Tumor
-0.1
553
Tumor
-0.1
277
Tumor
-0.1
554
Normal
-0.1
524
Normal
-0.1
721
Tumor
-0.1
1016
Normal
-0.1
135
Tumor
-0.1
917
Tumor
-0.1
814
Normal
-0.1
498
Normal
-0.1
331
Tumor
-0.1
525
Tumor
-0.1
913
Tumor
-0.1
257
Tumor
-0.2
416
Normal
-0.2
448
Normal
-0.2
1014
Normal
-0.2
777
Tumor
-0.2
213
Tumor
-0.2
755
Tumor
-0.2
363
Tumor
-0.2
523
Tumor
-0.2
452
Normal
-0.2
141
Tumor
-0.2
968
Normal
-0.2
1025
Tumor
-0.2
867
Tumor
-0.2
883
Tumor
-0.2
494
Normal
-0.2
851
Tumor
-0.2
983
Tumor
-0.2
477
Tumor
-0.2
131
Tumor
-0.2
421
Tumor
-0.2
1031
Tumor
-0.2
685
Tumor
-0.2
912
Normal
-0.2
1015
Tumor
-0.2
963
Tumor
-0.2
422
Normal
-0.2
533
Tumor
-0.3
367
Tumor
-0.3
212
Normal
-0.3
745
Tumor
-0.3
955
Tumor
-0.3
147
Tumor
-0.3
332
Normal
-0.3
271
Tumor
-0.3
285
Tumor
-0.3
427
Tumor
-0.3
413
Tumor
-0.3
861
Tumor
-0.3
434
Normal
-0.3
536
Normal
-0.3
737
Tumor
-0.3
415
Tumor
-0.3
447
Tumor
-0.3
528
Normal
-0.3
311
Tumor
-0.3
925
Tumor
-0.3
571
Tumor
-0.3
984
Normal
-0.3
443
Tumor
-0.4
964
Normal
-0.4
727
Tumor
-0.4
663
Tumor
-0.4
952
Normal
-0.4
493
Tumor
-0.4
977
Tumor
-0.4
423
Tumor
-0.4
497
Tumor
-0.4
123
Tumor
-0.4
978
Normal
-0.4
965
Tumor
-0.4
355
Tumor
-0.4
488
Normal
-0.5
451
Tumor
-0.5
445
Tumor
-0.5
383
Tumor
-0.5
473
Tumor
-0.5
557
Tumor
-0.5
873
Tumor
-0.5
487
Tumor
-0.5
463
Tumor
-0.5
513
Tumor
-0.5
283
Tumor
-0.5
535
Tumor
-0.6
387
Tumor
-0.6
411
Tumor
-0.6
231
Tumor
-0.6
661
Tumor
-0.6
1013
Tumor
-0.6
351
Tumor
-0.6
1021
Tumor
-0.7
385
Tumor
-0.7
537
Tumor
-0.7
724
Normal
-0.7
433
Tumor
-0.7
1027
Tumor
-0.7
357
Tumor
-0.7
951
Tumor
-0.8
527
Tumor
-0.8
865
Tumor
-0.8
211
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.