MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:240.8 nTPM
HPA Brain:159.2 nTPM
GTEx:240.8 nTPM
FANTOM5:154.2 Scaled Tags Per Million
Pig:267.4 nTPM
Mouse:50.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.9
2586 Male, age 75, left hemisphere 204.1
2666 Male, age 74, left hemisphere 148.4
2019 Male, age 18, unknown 146.9
2828 Female, age 72, unknown 144.9
1827 Male, age 72, unknown 125.3
1870 Female, age 42, unknown 118.7
2219 Male, age 76, both hemispheres 107.0
1833 Male, age 53, unknown 106.2
1830 Male, age 51, unknown 95.3
2411 Female, age 72, unknown 82.1
Dorsal raphe nucleus
nTPM: 133.0
2047 Male, age 72, unknown 147.9
1828 Male, age 53, unknown 147.7
2298 Female, age 72, unknown 139.7
2750 Male, age 76, both hemispheres 122.8
2016 Female, age 72, unknown 106.9
Inferior colliculus
nTPM: 136.5
1890 Male, age 53, unknown 157.9
2097 Female, age 72, unknown 139.3
2849 Male, age 72, unknown 126.1
1848 Female, age 42, unknown 122.6
Median raphe nucleus
nTPM: 152.9
2220 Male, age 76, midline 152.9
Periaquaductal grey, anterior
nTPM: 140.8
1795 Male, age 51, unknown 158.5
1947 Male, age 18, unknown 142.7
2502 Female, age 75, unknown 121.3
Periaquaductal grey, dorsal
nTPM: 107.4
2850 Male, age 76, both hemispheres 133.5
1831 Male, age 72, unknown 102.4
1840 Male, age 53, unknown 97.9
2464 Female, age 72, unknown 95.9
Periaquaductal grey, lateral
nTPM: 112.4
2272 Male, age 74, both hemispheres 128.3
2053 Male, age 18, unknown 105.8
2140 Male, age 76, both hemispheres 103.1
Pretectal area
nTPM: 159.2
1816 Male, age 51, unknown 220.0
1944 Female, age 72, unknown 219.5
2007 Male, age 72, unknown 214.7
1817 Female, age 42, unknown 207.1
2667 Female, age 75, unknown 178.2
1815 Male, age 53, unknown 150.7
2224 Female, age 72, unknown 141.5
2825 Male, age 18, unknown 118.0
2273 Male, age 74, both hemispheres 106.1
2316 Male, age 76, right hemisphere 104.6
2407 Male, age 75, both hemispheres 90.9
Red nucleus
nTPM: 139.8
2785 Male, age 18, unknown 167.9
2503 Female, age 72, unknown 160.8
2725 Female, age 75, unknown 156.6
2769 Male, age 72, unknown 145.1
2823 Male, age 76, right hemisphere 139.1
2588 Male, age 74, left hemisphere 138.0
1821 Female, age 72, unknown 134.7
2227 Male, age 72, unknown 132.0
1954 Female, age 42, unknown 131.4
1865 Male, age 51, unknown 130.4
2584 Male, age 75, left hemisphere 124.6
1904 Male, age 53, unknown 116.8
Substantia nigra
nTPM: 140.4
2665 Male, age 74, both hemispheres 179.4
1916 Female, age 42, unknown 177.5
1889 Female, age 72, unknown 174.7
2583 Male, age 75, right hemisphere 140.3
1851 Male, age 51, unknown 138.7
1941 Male, age 53, unknown 131.4
2699 Male, age 18, unknown 117.0
2590 Female, age 75, unknown 116.9
2409 Female, age 72, unknown 115.7
2241 Male, age 72, unknown 112.4
Superior colliculus
nTPM: 127.3
2087 Female, age 72, unknown 158.6
1796 Male, age 53, unknown 156.9
2261 Male, age 18, unknown 138.5
2664 Male, age 75, both hemispheres 136.7
2668 Female, age 75, unknown 129.7
2587 Male, age 74, left hemisphere 120.8
1913 Female, age 42, unknown 112.6
1995 Male, age 72, unknown 108.9
1839 Male, age 51, unknown 106.8
1895 Male, age 76, right hemisphere 103.7
Ventral tegmental area
nTPM: 125.1
2218 Male, age 76, both hemispheres 143.3
1915 Female, age 42, unknown 136.2
1942 Male, age 51, unknown 123.3
2021 Male, age 53, unknown 122.7
2223 Female, age 72, unknown 117.5
2410 Female, age 72, unknown 107.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 240.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 240.8
Samples: 139

Max nTPM: 597.0
Min nTPM: 63.5
Std nTPM: 84.1
Median nTPM: 243.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 597.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 488.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 469.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 454.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 417.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 389.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 369.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 367.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 364.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 351.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 345.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 154.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.2
FF:10158-103A5 76 years, female 154.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 267.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 180.8
Samples: 4

Max nTPM: 269.7
Min nTPM: 128.3
Sample A Female 269.7
Sample B Female 135.7
Sample C Male 189.3
Sample D Male 128.3
Midbrain
nTPM: 216.7
Samples: 4

Max nTPM: 271.2
Min nTPM: 172.8
Sample A Female 185.2
Sample B Female 172.8
Sample C Male 271.2
Sample D Male 237.4
Periaqueductal gray
nTPM: 153.8
Samples: 3

Max nTPM: 178.1
Min nTPM: 129.0
Sample B Female 154.2
Sample C Male 178.1
Sample D Male 129.0
Superior colliculi
nTPM: 267.4
Samples: 4

Max nTPM: 339.0
Min nTPM: 221.0
Sample A Female 339.0
Sample B Female 222.8
Sample C Male 286.8
Sample D Male 221.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 73.1
Min nTPM: 34.8
Sample A Male 73.1
Sample B Male 44.9
Sample C Female 34.8
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
75197594 Antisense, RP_060502_01_C04, Mouse strain C57BL/6J (56 days, male) 5.7

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