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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM199 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM199 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
357
Tumor
1.0
411
Tumor
1.0
533
Tumor
1.0
313
Tumor
0.9
527
Tumor
0.9
965
Tumor
0.8
865
Tumor
0.8
981
Tumor
0.7
257
Tumor
0.7
537
Tumor
0.7
967
Tumor
0.7
387
Tumor
0.7
745
Tumor
0.7
351
Tumor
0.7
497
Tumor
0.7
925
Tumor
0.7
125
Tumor
0.6
375
Tumor
0.6
341
Tumor
0.6
267
Tumor
0.6
477
Tumor
0.6
1013
Tumor
0.6
331
Tumor
0.6
553
Tumor
0.6
861
Tumor
0.6
953
Tumor
0.5
1027
Tumor
0.5
663
Tumor
0.5
445
Tumor
0.5
685
Tumor
0.5
311
Tumor
0.5
915
Tumor
0.5
867
Tumor
0.5
755
Tumor
0.5
943
Tumor
0.5
491
Tumor
0.5
572
Normal
0.5
923
Tumor
0.5
147
Tumor
0.5
435
Tumor
0.5
724
Normal
0.4
355
Tumor
0.4
231
Tumor
0.4
647
Tumor
0.4
535
Tumor
0.4
525
Tumor
0.4
343
Tumor
0.4
171
Tumor
0.4
785
Tumor
0.4
384
Normal
0.4
741
Tumor
0.4
1021
Tumor
0.4
361
Tumor
0.4
917
Tumor
0.3
648
Normal
0.3
873
Tumor
0.3
777
Tumor
0.3
697
Tumor
0.3
641
Tumor
0.3
187
Tumor
0.3
481
Tumor
0.3
913
Tumor
0.3
272
Normal
0.3
642
Normal
0.3
262
Normal
0.3
567
Tumor
0.3
918
Normal
0.3
957
Tumor
0.3
488
Normal
0.3
498
Normal
0.3
258
Normal
0.3
721
Tumor
0.3
455
Tumor
0.3
618
Normal
0.2
185
Tumor
0.2
571
Tumor
0.2
413
Tumor
0.2
955
Tumor
0.2
1015
Tumor
0.2
1041
Tumor
0.2
471
Tumor
0.2
672
Normal
0.2
423
Tumor
0.2
261
Tumor
0.2
1045
Tumor
0.2
916
Normal
0.2
494
Normal
0.2
328
Normal
0.2
391
Tumor
0.2
465
Tumor
0.2
937
Tumor
0.2
434
Normal
0.2
433
Tumor
0.2
283
Tumor
0.2
573
Tumor
0.2
268
Normal
0.2
412
Normal
0.2
112
Tumor
0.2
383
Tumor
0.2
615
Tumor
0.2
482
Normal
0.2
951
Tumor
0.2
727
Tumor
0.1
636
Normal
0.1
446
Normal
0.1
463
Tumor
0.1
232
Normal
0.1
863
Tumor
0.1
422
Normal
0.1
426
Normal
0.1
314
Normal
0.1
868
Normal
0.1
911
Tumor
0.1
493
Tumor
0.1
976
Normal
0.1
277
Tumor
0.1
421
Tumor
0.1
395
Tumor
0.1
627
Tumor
0.1
278
Normal
0.1
123
Tumor
0.1
874
Normal
0.1
616
Normal
0.1
473
Tumor
0.1
524
Normal
0.1
864
Normal
0.1
756
Normal
0.1
366
Normal
0.1
978
Normal
0.1
451
Tumor
0.1
444
Normal
0.1
353
Tumor
0.1
778
Normal
0.1
188
Normal
0.1
376
Normal
0.1
354
Normal
0.1
367
Tumor
0.1
332
Normal
0.1
628
Normal
0.1
866
Normal
0.1
662
Normal
0.1
983
Tumor
0.0
127
Tumor
0.0
138
Normal
0.0
342
Normal
0.0
492
Normal
0.0
516
Normal
0.0
534
Normal
0.0
443
Tumor
0.0
312
Normal
0.0
538
Normal
0.0
968
Normal
0.0
113
Tumor
0.0
468
Normal
0.0
536
Normal
0.0
1016
Normal
0.0
356
Normal
0.0
365
Tumor
0.0
963
Tumor
0.0
467
Tumor
0.0
327
Tumor
0.0
881
Tumor
0.0
364
Normal
0.0
558
Normal
0.0
466
Normal
0.0
563
Tumor
0.0
352
Normal
0.0
924
Normal
0.0
1028
Normal
0.0
487
Tumor
0.0
213
Tumor
0.0
513
Tumor
0.0
574
Normal
0.0
746
Normal
0.0
131
Tumor
0.0
671
Tumor
0.0
568
Normal
0.0
431
Tumor
0.0
428
Normal
0.0
975
Tumor
0.0
722
Normal
0.0
956
Normal
0.0
427
Tumor
0.0
388
Normal
0.0
557
Tumor
0.0
436
Normal
0.0
952
Normal
0.0
298
Normal
0.0
815
Tumor
0.0
228
Normal
0.0
484
Normal
0.0
661
Tumor
0.0
464
Normal
0.0
161
Tumor
0.0
545
Tumor
-0.1
344
Normal
-0.1
564
Normal
-0.1
851
Tumor
-0.1
877
Tumor
-0.1
813
Tumor
-0.1
1014
Normal
-0.1
526
Normal
-0.1
462
Normal
-0.1
514
Normal
-0.1
424
Normal
-0.1
984
Normal
-0.1
358
Normal
-0.1
883
Tumor
-0.1
196
Normal
-0.1
452
Normal
-0.1
528
Normal
-0.1
665
Tumor
-0.1
823
Tumor
-0.1
478
Normal
-0.1
944
Normal
-0.1
414
Normal
-0.1
142
Normal
-0.1
617
Tumor
-0.1
966
Normal
-0.1
148
Normal
-0.1
212
Normal
-0.1
977
Tumor
-0.1
515
Tumor
-0.1
362
Normal
-0.1
554
Normal
-0.1
664
Normal
-0.1
1026
Normal
-0.1
546
Normal
-0.1
137
Tumor
-0.1
938
Normal
-0.1
126
Normal
-0.1
456
Normal
-0.1
284
Normal
-0.2
786
Normal
-0.2
186
Normal
-0.2
416
Normal
-0.2
141
Tumor
-0.2
926
Normal
-0.2
195
Tumor
-0.2
271
Tumor
-0.2
1025
Tumor
-0.2
415
Tumor
-0.2
297
Tumor
-0.2
368
Normal
-0.2
396
Normal
-0.2
135
Tumor
-0.2
136
Normal
-0.2
394
Normal
-0.2
954
Normal
-0.2
192
Normal
-0.2
191
Tumor
-0.2
1032
Normal
-0.2
862
Normal
-0.2
472
Normal
-0.2
852
Normal
-0.2
214
Normal
-0.2
114
Normal
-0.2
958
Normal
-0.2
286
Normal
-0.2
211
Tumor
-0.2
461
Tumor
-0.2
713
Tumor
-0.2
1022
Normal
-0.2
162
Normal
-0.2
723
Tumor
-0.2
518
Normal
-0.2
914
Normal
-0.2
217
Tumor
-0.2
128
Normal
-0.2
392
Normal
-0.2
474
Normal
-0.2
982
Normal
-0.3
738
Normal
-0.3
635
Tumor
-0.3
666
Normal
-0.3
124
Normal
-0.3
172
Normal
-0.3
432
Normal
-0.3
744
Normal
-0.3
224
Normal
-0.3
714
Normal
-0.3
964
Normal
-0.3
698
Normal
-0.3
686
Normal
-0.3
448
Normal
-0.3
393
Tumor
-0.3
223
Tumor
-0.3
716
Normal
-0.3
878
Normal
-0.3
218
Normal
-0.3
1031
Tumor
-0.3
523
Tumor
-0.3
728
Normal
-0.3
922
Normal
-0.3
882
Normal
-0.3
111
Normal
-0.3
921
Tumor
-0.4
824
Normal
-0.4
222
Normal
-0.4
447
Tumor
-0.4
363
Tumor
-0.4
816
Normal
-0.4
696
Normal
-0.4
145
Tumor
-0.4
742
Normal
-0.4
715
Tumor
-0.4
1042
Normal
-0.4
132
Normal
-0.4
857
Tumor
-0.4
385
Tumor
-0.4
483
Tumor
-0.4
425
Tumor
-0.5
517
Tumor
-0.5
227
Tumor
-0.5
1046
Normal
-0.5
386
Normal
-0.5
858
Normal
-0.5
912
Normal
-0.6
221
Tumor
-0.6
817
Tumor
-0.6
884
Normal
-0.6
146
Normal
-0.6
1044
Normal
-0.6
695
Tumor
-0.7
1043
Tumor
-0.7
814
Normal
-0.7
743
Tumor
-0.7
737
Tumor
-0.8
818
Normal
-0.8
285
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
