MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:15.5 nTPM
GTEx:9.3 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:59.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
1870 Female, age 42, unknown 15.9
2411 Female, age 72, unknown 15.9
1830 Male, age 51, unknown 15.8
1833 Male, age 53, unknown 15.6
1827 Male, age 72, unknown 14.5
2019 Male, age 18, unknown 14.2
2828 Female, age 72, unknown 14.2
2219 Male, age 76, both hemispheres 13.6
2666 Male, age 74, left hemisphere 13.4
2586 Male, age 75, left hemisphere 12.8
Dorsal raphe nucleus
nTPM: 15.0
2750 Male, age 76, both hemispheres 16.1
2047 Male, age 72, unknown 16.0
1828 Male, age 53, unknown 15.4
2016 Female, age 72, unknown 14.5
2298 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 14.8
2097 Female, age 72, unknown 15.3
2849 Male, age 72, unknown 15.0
1848 Female, age 42, unknown 14.6
1890 Male, age 53, unknown 14.4
Median raphe nucleus
nTPM: 15.3
2220 Male, age 76, midline 15.3
Periaquaductal grey, anterior
nTPM: 14.3
1947 Male, age 18, unknown 16.4
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 13.6
1840 Male, age 53, unknown 14.5
2464 Female, age 72, unknown 14.5
2850 Male, age 76, both hemispheres 13.1
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 13.6
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 13.8
2272 Male, age 74, both hemispheres 12.8
Pretectal area
nTPM: 14.1
2316 Male, age 76, right hemisphere 16.2
2667 Female, age 75, unknown 15.9
2407 Male, age 75, both hemispheres 14.6
2825 Male, age 18, unknown 14.4
1815 Male, age 53, unknown 14.2
1817 Female, age 42, unknown 13.7
2007 Male, age 72, unknown 13.7
2273 Male, age 74, both hemispheres 13.6
1944 Female, age 72, unknown 13.4
1816 Male, age 51, unknown 13.3
2224 Female, age 72, unknown 12.5
Red nucleus
nTPM: 15.5
2823 Male, age 76, right hemisphere 17.8
1865 Male, age 51, unknown 16.8
1821 Female, age 72, unknown 16.4
2588 Male, age 74, left hemisphere 16.2
1954 Female, age 42, unknown 16.1
2769 Male, age 72, unknown 15.5
1904 Male, age 53, unknown 15.2
2503 Female, age 72, unknown 15.0
2584 Male, age 75, left hemisphere 14.8
2227 Male, age 72, unknown 14.7
2785 Male, age 18, unknown 13.7
2725 Female, age 75, unknown 13.1
Substantia nigra
nTPM: 14.4
2241 Male, age 72, unknown 16.5
1851 Male, age 51, unknown 15.0
1916 Female, age 42, unknown 15.0
2409 Female, age 72, unknown 14.6
2590 Female, age 75, unknown 14.5
2665 Male, age 74, both hemispheres 14.5
1889 Female, age 72, unknown 14.1
1941 Male, age 53, unknown 13.4
2699 Male, age 18, unknown 13.4
2583 Male, age 75, right hemisphere 12.6
Superior colliculus
nTPM: 13.8
1895 Male, age 76, right hemisphere 16.7
2668 Female, age 75, unknown 14.4
1839 Male, age 51, unknown 14.2
2587 Male, age 74, left hemisphere 14.0
2261 Male, age 18, unknown 13.9
1913 Female, age 42, unknown 13.8
2087 Female, age 72, unknown 13.2
1796 Male, age 53, unknown 13.0
1995 Male, age 72, unknown 13.0
2664 Male, age 75, both hemispheres 12.1
Ventral tegmental area
nTPM: 13.8
2410 Female, age 72, unknown 14.9
1915 Female, age 42, unknown 14.4
2021 Male, age 53, unknown 14.0
2223 Female, age 72, unknown 13.4
2218 Male, age 76, both hemispheres 13.2
1942 Male, age 51, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 12.4
Min nTPM: 6.6
Std nTPM: 1.3
Median nTPM: 9.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 12.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 12.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 12.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 11.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 11.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 11.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 45.8
Min nTPM: 24.3
Sample A Female 45.8
Sample B Female 25.9
Sample C Male 31.5
Sample D Male 24.3
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 35.0
Min nTPM: 32.0
Sample A Female 35.0
Sample B Female 32.6
Sample C Male 32.0
Sample D Male 33.9
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 37.5
Min nTPM: 27.4
Sample B Female 27.4
Sample C Male 37.5
Sample D Male 31.8
Superior colliculi
nTPM: 36.1
Samples: 4

Max nTPM: 48.1
Min nTPM: 27.2
Sample A Female 48.1
Sample B Female 27.2
Sample C Male 34.4
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.5
Samples: 4

Max nTPM: 62.1
Min nTPM: 54.6
Sample A Male 61.2
Sample B Male 62.1
Sample C Female 54.6
Sample D Female 60.0

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