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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5MF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
638.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3304.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2016.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1678.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1529.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1450.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1379.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1378.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1372.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1343.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1303.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1279.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1272.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1249.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1248.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1227.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1227.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1216.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1199.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1176.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1169.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1110.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1107.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1104.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1081.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1075.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1072.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1057.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1035.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1030.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1025.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1021.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1002.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1001.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1001.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
970.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
955.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
955.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
954.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
945.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
942.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
927.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
926.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
915.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
907.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
904.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
897.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
895.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
895.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
894.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
888.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
882.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
872.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
870.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
865.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
861.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
859.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
857.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
856.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
852.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
851.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
848.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
842.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
835.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
833.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
829.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
828.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
827.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
823.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
816.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
812.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
808.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
807.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
804.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
800.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
794.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
794.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
793.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
790.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
789.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
788.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
786.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
785.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
777.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
775.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
771.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
771.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
770.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
769.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
761.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
757.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
756.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
754.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
749.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
748.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
746.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
745.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
742.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
733.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
731.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
729.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
727.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
722.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
721.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
715.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
713.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
710.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
707.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
702.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
700.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
696.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
696.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
695.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
695.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
693.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
687.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
687.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
679.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
678.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
675.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
675.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
674.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
672.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
668.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
668.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
666.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
665.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
664.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
658.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
656.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
656.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
654.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
649.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
645.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
644.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
643.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
643.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
643.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
642.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
641.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
640.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
636.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
636.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
635.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
635.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
633.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
632.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
631.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
629.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
624.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
619.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
617.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
617.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
617.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
614.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
612.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
612.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
611.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
607.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
606.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
602.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
601.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
599.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
598.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
596.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
596.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
595.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
592.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
589.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
586.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
586.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
584.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
583.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
580.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
578.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
575.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
573.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
572.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
572.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
570.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
570.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
569.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
567.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
566.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
566.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
564.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
564.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
563.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
563.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
562.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
562.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
562.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
560.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
559.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
559.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
558.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
557.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
555.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
555.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
549.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
548.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
548.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
545.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
545.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
545.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
540.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
540.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
538.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
537.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
535.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
529.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
529.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
527.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
527.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
524.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
522.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
521.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
521.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
520.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
518.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
518.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
516.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
514.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
514.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
513.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
513.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
513.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
512.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
510.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
509.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
506.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
505.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
503.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
503.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
502.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
502.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
502.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
499.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
498.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
496.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
492.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
487.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
487.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
486.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
483.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
483.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
480.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
479.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
479.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
479.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
479.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
479.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
478.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
477.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
475.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
472.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
472.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
469.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
469.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
466.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
466.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
466.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
465.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
465.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
465.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
464.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
459.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
458.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
457.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
457.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
455.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
455.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
455.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
454.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
454.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
454.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
452.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
449.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
449.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
449.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
448.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
445.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
444.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
443.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
443.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
441.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
441.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
438.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
437.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
437.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
434.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
432.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
432.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
431.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
428.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
428.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
425.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
422.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
421.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
421.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
420.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
417.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
417.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
417.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
414.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
413.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
410.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
410.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
408.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
408.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
408.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
406.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
405.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
404.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
404.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
402.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
402.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
399.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
398.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
393.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
391.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
390.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
389.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
383.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
382.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
382.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
382.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
380.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
377.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
377.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
372.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
366.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
364.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
362.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
361.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
361.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
356.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
352.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
349.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
349.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
347.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
345.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
344.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
339.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
333.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
329.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
327.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
323.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
322.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
312.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
310.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
307.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
304.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
290.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
284.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
282.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
276.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
273.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
267.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
226.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
221.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
211.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
571
Tumor
0.9
132
Normal
0.9
172
Normal
0.9
358
Normal
0.9
278
Normal
0.9
128
Normal
0.9
314
Normal
0.8
388
Normal
0.8
344
Normal
0.8
426
Normal
0.8
436
Normal
0.8
428
Normal
0.8
258
Normal
0.8
394
Normal
0.8
342
Normal
0.8
138
Normal
0.8
114
Normal
0.8
111
Normal
0.8
452
Normal
0.8
446
Normal
0.8
424
Normal
0.7
162
Normal
0.7
136
Normal
0.7
618
Normal
0.7
332
Normal
0.7
354
Normal
0.7
222
Normal
0.7
423
Tumor
0.7
432
Normal
0.7
186
Normal
0.7
298
Normal
0.7
414
Normal
0.7
636
Normal
0.7
615
Tumor
0.7
232
Normal
0.7
824
Normal
0.7
376
Normal
0.7
148
Normal
0.7
361
Tumor
0.7
818
Normal
0.6
422
Normal
0.6
392
Normal
0.6
564
Normal
0.6
396
Normal
0.6
648
Normal
0.6
568
Normal
0.6
786
Normal
0.6
366
Normal
0.6
196
Normal
0.5
746
Normal
0.5
464
Normal
0.5
912
Normal
0.5
745
Tumor
0.5
642
Normal
0.5
126
Normal
0.5
227
Tumor
0.5
352
Normal
0.5
386
Normal
0.5
146
Normal
0.5
882
Normal
0.5
272
Normal
0.5
218
Normal
0.5
368
Normal
0.5
664
Normal
0.5
723
Tumor
0.5
1045
Tumor
0.5
616
Normal
0.5
365
Tumor
0.5
722
Normal
0.5
312
Normal
0.5
456
Normal
0.5
113
Tumor
0.5
738
Normal
0.4
742
Normal
0.4
914
Normal
0.4
628
Normal
0.4
666
Normal
0.4
862
Normal
0.4
462
Normal
0.4
362
Normal
0.4
214
Normal
0.4
635
Tumor
0.4
393
Tumor
0.4
286
Normal
0.4
1046
Normal
0.4
444
Normal
0.4
468
Normal
0.4
145
Tumor
0.4
353
Tumor
0.4
262
Normal
0.4
672
Normal
0.4
572
Normal
0.4
466
Normal
0.4
662
Normal
0.4
574
Normal
0.4
756
Normal
0.4
866
Normal
0.3
744
Normal
0.3
864
Normal
0.3
448
Normal
0.3
858
Normal
0.3
816
Normal
0.3
356
Normal
0.3
142
Normal
0.3
1032
Normal
0.3
127
Tumor
0.3
228
Normal
0.3
465
Tumor
0.3
124
Normal
0.3
878
Normal
0.3
868
Normal
0.3
434
Normal
0.3
741
Tumor
0.3
1022
Normal
0.3
137
Tumor
0.3
1026
Normal
0.3
482
Normal
0.3
341
Tumor
0.2
728
Normal
0.2
188
Normal
0.2
874
Normal
0.2
1027
Tumor
0.2
714
Normal
0.2
411
Tumor
0.2
884
Normal
0.2
1043
Tumor
0.2
231
Tumor
0.2
698
Normal
0.2
384
Normal
0.2
443
Tumor
0.2
257
Tumor
0.2
713
Tumor
0.2
1042
Normal
0.2
433
Tumor
0.2
284
Normal
0.2
852
Normal
0.2
528
Normal
0.1
1028
Normal
0.1
261
Tumor
0.1
461
Tumor
0.1
451
Tumor
0.1
472
Normal
0.1
268
Normal
0.1
161
Tumor
0.1
558
Normal
0.1
112
Tumor
0.1
416
Normal
0.1
982
Normal
0.1
357
Tumor
0.1
911
Tumor
0.1
328
Normal
0.1
534
Normal
0.1
563
Tumor
0.1
1044
Normal
0.1
135
Tumor
0.1
778
Normal
0.1
867
Tumor
0.1
1016
Normal
0.1
686
Normal
0.0
224
Normal
0.0
716
Normal
0.0
195
Tumor
0.0
721
Tumor
0.0
171
Tumor
0.0
217
Tumor
0.0
125
Tumor
0.0
421
Tumor
0.0
427
Tumor
0.0
515
Tumor
0.0
567
Tumor
0.0
526
Normal
0.0
617
Tumor
0.0
785
Tumor
0.0
863
Tumor
0.0
387
Tumor
0.0
187
Tumor
0.0
192
Normal
0.0
271
Tumor
0.0
327
Tumor
0.0
267
Tumor
0.0
755
Tumor
0.0
557
Tumor
0.0
221
Tumor
0.0
1025
Tumor
-0.1
191
Tumor
-0.1
1014
Normal
-0.1
873
Tumor
-0.1
823
Tumor
-0.1
984
Normal
-0.1
313
Tumor
-0.1
641
Tumor
-0.1
364
Normal
-0.1
141
Tumor
-0.1
514
Normal
-0.1
481
Tumor
-0.1
425
Tumor
-0.1
922
Normal
-0.1
383
Tumor
-0.1
297
Tumor
-0.1
412
Normal
-0.1
431
Tumor
-0.1
978
Normal
-0.1
513
Tumor
-0.1
212
Normal
-0.1
488
Normal
-0.1
924
Normal
-0.1
223
Tumor
-0.1
696
Normal
-0.1
777
Tumor
-0.1
573
Tumor
-0.1
964
Normal
-0.2
474
Normal
-0.2
213
Tumor
-0.2
976
Normal
-0.2
413
Tumor
-0.2
727
Tumor
-0.2
695
Tumor
-0.2
851
Tumor
-0.2
815
Tumor
-0.2
1041
Tumor
-0.2
813
Tumor
-0.2
391
Tumor
-0.2
351
Tumor
-0.2
814
Normal
-0.2
938
Normal
-0.2
981
Tumor
-0.2
926
Normal
-0.2
185
Tumor
-0.2
743
Tumor
-0.2
883
Tumor
-0.2
435
Tumor
-0.2
968
Normal
-0.2
918
Normal
-0.2
954
Normal
-0.2
147
Tumor
-0.2
925
Tumor
-0.2
944
Normal
-0.2
494
Normal
-0.3
445
Tumor
-0.3
518
Normal
-0.3
956
Normal
-0.3
663
Tumor
-0.3
467
Tumor
-0.3
955
Tumor
-0.3
363
Tumor
-0.3
857
Tumor
-0.3
952
Normal
-0.3
647
Tumor
-0.3
915
Tumor
-0.3
517
Tumor
-0.3
913
Tumor
-0.3
923
Tumor
-0.3
455
Tumor
-0.3
487
Tumor
-0.3
367
Tumor
-0.4
1031
Tumor
-0.4
484
Normal
-0.4
916
Normal
-0.4
665
Tumor
-0.4
966
Normal
-0.4
123
Tumor
-0.4
737
Tumor
-0.4
463
Tumor
-0.4
385
Tumor
-0.4
277
Tumor
-0.4
546
Normal
-0.4
881
Tumor
-0.4
343
Tumor
-0.4
1021
Tumor
-0.4
671
Tumor
-0.5
375
Tumor
-0.5
478
Normal
-0.5
331
Tumor
-0.5
967
Tumor
-0.5
447
Tumor
-0.5
921
Tumor
-0.5
395
Tumor
-0.5
538
Normal
-0.5
953
Tumor
-0.5
958
Normal
-0.5
516
Normal
-0.5
491
Tumor
-0.5
861
Tumor
-0.5
311
Tumor
-0.5
877
Tumor
-0.5
415
Tumor
-0.6
498
Normal
-0.6
715
Tumor
-0.6
1013
Tumor
-0.6
524
Normal
-0.6
1015
Tumor
-0.6
685
Tumor
-0.7
285
Tumor
-0.7
554
Normal
-0.7
483
Tumor
-0.7
661
Tumor
-0.7
527
Tumor
-0.8
697
Tumor
-0.8
477
Tumor
-0.8
724
Normal
-0.8
817
Tumor
-0.8
983
Tumor
-0.8
525
Tumor
-0.8
917
Tumor
-0.8
865
Tumor
-0.8
975
Tumor
-0.8
536
Normal
-0.9
492
Normal
-0.9
937
Tumor
-0.9
537
Tumor
-0.9
977
Tumor
-0.9
523
Tumor
-1.0
553
Tumor
-1.0
951
Tumor
-1.0
943
Tumor
-1.0
283
Tumor
-1.1
355
Tumor
-1.1
493
Tumor
-1.1
131
Tumor
-1.2
497
Tumor
-1.2
957
Tumor
-1.2
471
Tumor
-1.2
211
Tumor
-1.2
963
Tumor
-1.3
533
Tumor
-1.3
535
Tumor
-1.3
473
Tumor
-1.3
545
Tumor
-1.6
965
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.