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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRCP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRCP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO23543
0 years, male, NA, stage:2, alive, 1020 days
85.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
64.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
62.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
957
Tumor
1.1
1021
Tumor
1.0
535
Tumor
0.9
435
Tumor
0.9
937
Tumor
0.8
423
Tumor
0.8
1027
Tumor
0.8
426
Normal
0.8
951
Tumor
0.7
983
Tumor
0.7
367
Tumor
0.6
1013
Tumor
0.6
465
Tumor
0.6
123
Tumor
0.6
635
Tumor
0.6
917
Tumor
0.6
513
Tumor
0.6
533
Tumor
0.6
851
Tumor
0.5
661
Tumor
0.5
413
Tumor
0.5
473
Tumor
0.5
671
Tumor
0.5
391
Tumor
0.5
422
Normal
0.5
497
Tumor
0.5
817
Tumor
0.5
211
Tumor
0.5
925
Tumor
0.4
445
Tumor
0.4
865
Tumor
0.4
517
Tumor
0.4
414
Normal
0.4
433
Tumor
0.4
313
Tumor
0.4
647
Tumor
0.4
493
Tumor
0.4
297
Tumor
0.4
427
Tumor
0.4
191
Tumor
0.4
331
Tumor
0.4
425
Tumor
0.4
113
Tumor
0.3
938
Normal
0.3
1041
Tumor
0.3
695
Tumor
0.3
953
Tumor
0.3
943
Tumor
0.3
545
Tumor
0.3
421
Tumor
0.3
557
Tumor
0.3
483
Tumor
0.3
525
Tumor
0.3
131
Tumor
0.3
467
Tumor
0.3
573
Tumor
0.3
915
Tumor
0.3
482
Normal
0.3
665
Tumor
0.2
777
Tumor
0.2
745
Tumor
0.2
385
Tumor
0.2
977
Tumor
0.2
424
Normal
0.2
617
Tumor
0.2
537
Tumor
0.2
364
Normal
0.2
477
Tumor
0.2
967
Tumor
0.2
387
Tumor
0.2
571
Tumor
0.2
755
Tumor
0.2
257
Tumor
0.2
395
Tumor
0.1
444
Normal
0.1
952
Normal
0.1
484
Normal
0.1
217
Tumor
0.1
913
Tumor
0.1
954
Normal
0.1
615
Tumor
0.1
536
Normal
0.1
375
Tumor
0.1
664
Normal
0.1
223
Tumor
0.1
283
Tumor
0.1
383
Tumor
0.1
944
Normal
0.1
785
Tumor
0.1
462
Normal
0.1
361
Tumor
0.1
127
Tumor
0.1
1015
Tumor
0.1
567
Tumor
0.1
523
Tumor
0.1
487
Tumor
0.1
356
Normal
0.1
267
Tumor
0.1
478
Normal
0.1
636
Normal
0.1
862
Normal
0.0
958
Normal
0.0
436
Normal
0.0
447
Tumor
0.0
431
Tumor
0.0
327
Tumor
0.0
285
Tumor
0.0
446
Normal
0.0
963
Tumor
0.0
472
Normal
0.0
393
Tumor
0.0
975
Tumor
0.0
311
Tumor
0.0
1045
Tumor
0.0
491
Tumor
0.0
715
Tumor
0.0
515
Tumor
0.0
916
Normal
0.0
434
Normal
0.0
213
Tumor
0.0
481
Tumor
0.0
492
Normal
0.0
355
Tumor
0.0
924
Normal
0.0
231
Tumor
0.0
365
Tumor
0.0
461
Tumor
0.0
672
Normal
-0.1
141
Tumor
-0.1
135
Tumor
-0.1
648
Normal
-0.1
411
Tumor
-0.1
616
Normal
-0.1
978
Normal
-0.1
195
Tumor
-0.1
466
Normal
-0.1
857
Tumor
-0.1
914
Normal
-0.1
498
Normal
-0.1
686
Normal
-0.1
474
Normal
-0.1
1032
Normal
-0.1
328
Normal
-0.1
455
Tumor
-0.1
563
Tumor
-0.1
685
Tumor
-0.1
968
Normal
-0.1
662
Normal
-0.1
746
Normal
-0.1
716
Normal
-0.1
618
Normal
-0.1
443
Tumor
-0.1
412
Normal
-0.1
524
Normal
-0.1
192
Normal
-0.1
697
Tumor
-0.1
955
Tumor
-0.1
416
Normal
-0.1
852
Normal
-0.1
873
Tumor
-0.1
882
Normal
-0.1
824
Normal
-0.1
818
Normal
-0.1
696
Normal
-0.1
984
Normal
-0.1
1026
Normal
-0.1
966
Normal
-0.1
814
Normal
-0.1
456
Normal
-0.1
518
Normal
-0.1
464
Normal
-0.1
912
Normal
-0.1
451
Tumor
-0.1
1044
Normal
-0.1
488
Normal
-0.1
1031
Tumor
-0.1
923
Tumor
-0.1
981
Tumor
-0.1
627
Tumor
-0.1
514
Normal
-0.1
641
Tumor
-0.1
222
Normal
-0.2
964
Normal
-0.2
468
Normal
-0.2
861
Tumor
-0.2
881
Tumor
-0.2
1046
Normal
-0.2
277
Tumor
-0.2
956
Normal
-0.2
463
Tumor
-0.2
284
Normal
-0.2
196
Normal
-0.2
976
Normal
-0.2
877
Tumor
-0.2
516
Normal
-0.2
918
Normal
-0.2
415
Tumor
-0.2
137
Tumor
-0.2
922
Normal
-0.2
212
Normal
-0.2
558
Normal
-0.2
224
Normal
-0.2
546
Normal
-0.2
1014
Normal
-0.2
568
Normal
-0.2
564
Normal
-0.2
778
Normal
-0.2
448
Normal
-0.2
642
Normal
-0.2
268
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
432
Normal
-0.2
572
Normal
-0.2
145
Tumor
-0.2
394
Normal
-0.2
926
Normal
-0.3
227
Tumor
-0.3
392
Normal
-0.3
494
Normal
-0.3
1043
Tumor
-0.3
816
Normal
-0.3
815
Tumor
-0.3
534
Normal
-0.3
112
Tumor
-0.3
628
Normal
-0.3
221
Tumor
-0.3
384
Normal
-0.3
864
Normal
-0.3
1022
Normal
-0.3
868
Normal
-0.3
262
Normal
-0.3
258
Normal
-0.3
376
Normal
-0.3
663
Tumor
-0.3
228
Normal
-0.3
286
Normal
-0.3
722
Normal
-0.3
823
Tumor
-0.3
756
Normal
-0.3
214
Normal
-0.3
368
Normal
-0.3
272
Normal
-0.3
362
Normal
-0.3
714
Normal
-0.4
866
Normal
-0.4
332
Normal
-0.4
883
Tumor
-0.4
126
Normal
-0.4
363
Tumor
-0.4
114
Normal
-0.4
878
Normal
-0.4
884
Normal
-0.4
314
Normal
-0.4
526
Normal
-0.4
1016
Normal
-0.4
554
Normal
-0.4
471
Tumor
-0.4
298
Normal
-0.4
553
Tumor
-0.4
574
Normal
-0.4
786
Normal
-0.4
982
Normal
-0.4
538
Normal
-0.4
698
Normal
-0.4
1025
Tumor
-0.4
386
Normal
-0.4
142
Normal
-0.4
366
Normal
-0.4
527
Tumor
-0.4
911
Tumor
-0.4
218
Normal
-0.5
867
Tumor
-0.5
312
Normal
-0.5
232
Normal
-0.5
125
Tumor
-0.5
132
Normal
-0.5
428
Normal
-0.5
146
Normal
-0.5
921
Tumor
-0.5
396
Normal
-0.5
388
Normal
-0.5
138
Normal
-0.5
874
Normal
-0.5
858
Normal
-0.5
528
Normal
-0.5
278
Normal
-0.5
111
Normal
-0.5
124
Normal
-0.5
813
Tumor
-0.5
452
Normal
-0.5
261
Tumor
-0.5
271
Tumor
-0.6
128
Normal
-0.6
136
Normal
-0.6
713
Tumor
-0.6
721
Tumor
-0.7
863
Tumor
-0.7
666
Normal
-0.9
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
