MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:197.1 nTPM
HPA Brain:53.7 nTPM
GTEx:197.1 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:839.0 nTPM
Mouse:418.3 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.3
2586 Male, age 75, left hemisphere 78.3
2666 Male, age 74, left hemisphere 54.3
1870 Female, age 42, unknown 52.7
2411 Female, age 72, unknown 50.1
1833 Male, age 53, unknown 47.7
2828 Female, age 72, unknown 47.4
1827 Male, age 72, unknown 45.5
2219 Male, age 76, both hemispheres 43.8
1830 Male, age 51, unknown 41.7
2019 Male, age 18, unknown 41.2
Dorsal raphe nucleus
nTPM: 50.6
1828 Male, age 53, unknown 52.9
2047 Male, age 72, unknown 52.0
2750 Male, age 76, both hemispheres 50.2
2298 Female, age 72, unknown 49.7
2016 Female, age 72, unknown 48.2
Inferior colliculus
nTPM: 47.2
1890 Male, age 53, unknown 53.6
1848 Female, age 42, unknown 48.9
2849 Male, age 72, unknown 43.6
2097 Female, age 72, unknown 42.6
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Periaquaductal grey, anterior
nTPM: 53.7
2502 Female, age 75, unknown 61.8
1795 Male, age 51, unknown 54.5
1947 Male, age 18, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 43.3
1840 Male, age 53, unknown 48.7
2464 Female, age 72, unknown 44.1
1831 Male, age 72, unknown 43.6
2850 Male, age 76, both hemispheres 37.0
Periaquaductal grey, lateral
nTPM: 39.3
2053 Male, age 18, unknown 48.9
2140 Male, age 76, both hemispheres 38.7
2272 Male, age 74, both hemispheres 30.2
Pretectal area
nTPM: 42.2
2316 Male, age 76, right hemisphere 48.3
2007 Male, age 72, unknown 47.7
2825 Male, age 18, unknown 46.5
1817 Female, age 42, unknown 45.2
1816 Male, age 51, unknown 44.4
2224 Female, age 72, unknown 44.3
1815 Male, age 53, unknown 41.8
2407 Male, age 75, both hemispheres 40.2
1944 Female, age 72, unknown 37.9
2667 Female, age 75, unknown 35.8
2273 Male, age 74, both hemispheres 32.5
Red nucleus
nTPM: 53.5
2503 Female, age 72, unknown 65.9
2227 Male, age 72, unknown 62.2
2584 Male, age 75, left hemisphere 61.1
2769 Male, age 72, unknown 60.0
1821 Female, age 72, unknown 58.9
2588 Male, age 74, left hemisphere 52.0
1904 Male, age 53, unknown 51.0
1865 Male, age 51, unknown 50.7
2785 Male, age 18, unknown 48.6
2725 Female, age 75, unknown 47.8
1954 Female, age 42, unknown 42.3
2823 Male, age 76, right hemisphere 41.0
Substantia nigra
nTPM: 51.8
2699 Male, age 18, unknown 64.0
1851 Male, age 51, unknown 63.3
1916 Female, age 42, unknown 57.5
2590 Female, age 75, unknown 55.4
2665 Male, age 74, both hemispheres 53.7
2583 Male, age 75, right hemisphere 52.4
1889 Female, age 72, unknown 50.7
2409 Female, age 72, unknown 42.4
1941 Male, age 53, unknown 41.7
2241 Male, age 72, unknown 36.6
Superior colliculus
nTPM: 48.1
2587 Male, age 74, left hemisphere 53.1
2664 Male, age 75, both hemispheres 52.5
1995 Male, age 72, unknown 49.7
1839 Male, age 51, unknown 49.5
2668 Female, age 75, unknown 49.3
1796 Male, age 53, unknown 48.1
1913 Female, age 42, unknown 47.9
1895 Male, age 76, right hemisphere 46.7
2087 Female, age 72, unknown 42.4
2261 Male, age 18, unknown 42.3
Ventral tegmental area
nTPM: 50.5
1915 Female, age 42, unknown 57.6
2410 Female, age 72, unknown 52.7
2223 Female, age 72, unknown 51.1
2021 Male, age 53, unknown 49.2
2218 Male, age 76, both hemispheres 47.3
1942 Male, age 51, unknown 44.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 197.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 197.1
Samples: 139

Max nTPM: 493.0
Min nTPM: 67.8
Std nTPM: 74.5
Median nTPM: 186.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 493.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 462.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 450.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 405.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 385.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 341.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 313.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 306.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 304.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 295.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 292.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 839.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 839.1
Samples: 4

Max nTPM: 1086.0
Min nTPM: 698.1
Sample A Female 1086.0
Sample B Female 873.4
Sample C Male 698.1
Sample D Male 698.8
Midbrain
nTPM: 787.7
Samples: 4

Max nTPM: 1053.6
Min nTPM: 537.9
Sample A Female 1053.6
Sample B Female 887.8
Sample C Male 671.5
Sample D Male 537.9
Periaqueductal gray
nTPM: 656.5
Samples: 3

Max nTPM: 692.8
Min nTPM: 598.8
Sample B Female 692.8
Sample C Male 678.0
Sample D Male 598.8
Superior colliculi
nTPM: 798.2
Samples: 4

Max nTPM: 1002.8
Min nTPM: 692.4
Sample A Female 1002.8
Sample B Female 765.3
Sample C Male 732.2
Sample D Male 692.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 418.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 418.3
Samples: 4

Max nTPM: 537.3
Min nTPM: 358.4
Sample A Male 537.3
Sample B Male 358.4
Sample C Female 377.9
Sample D Female 399.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
69112407 Antisense, RP_050324_02_G08, Mouse strain C57BL/6J (56 days, male) 3.7

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