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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
73.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
62.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
48.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
221
Tumor
1.4
685
Tumor
1.2
743
Tumor
1.2
975
Tumor
0.9
147
Tumor
0.7
1013
Tumor
0.7
545
Tumor
0.7
815
Tumor
0.7
737
Tumor
0.7
917
Tumor
0.7
463
Tumor
0.6
487
Tumor
0.6
937
Tumor
0.6
131
Tumor
0.6
697
Tumor
0.6
863
Tumor
0.6
125
Tumor
0.6
491
Tumor
0.6
641
Tumor
0.5
881
Tumor
0.5
363
Tumor
0.5
557
Tumor
0.4
447
Tumor
0.4
865
Tumor
0.4
713
Tumor
0.4
267
Tumor
0.4
977
Tumor
0.4
1015
Tumor
0.4
851
Tumor
0.4
1025
Tumor
0.4
921
Tumor
0.4
536
Normal
0.3
445
Tumor
0.3
492
Normal
0.3
715
Tumor
0.3
455
Tumor
0.3
212
Normal
0.3
161
Tumor
0.3
466
Normal
0.3
375
Tumor
0.3
195
Tumor
0.3
285
Tumor
0.3
873
Tumor
0.3
277
Tumor
0.3
874
Normal
0.3
351
Tumor
0.3
535
Tumor
0.3
923
Tumor
0.3
785
Tumor
0.2
1031
Tumor
0.2
464
Normal
0.2
355
Tumor
0.2
877
Tumor
0.2
211
Tumor
0.2
456
Normal
0.2
868
Normal
0.2
498
Normal
0.2
527
Tumor
0.2
538
Normal
0.2
468
Normal
0.2
755
Tumor
0.2
523
Tumor
0.2
1045
Tumor
0.2
553
Tumor
0.2
483
Tumor
0.2
817
Tumor
0.2
721
Tumor
0.2
393
Tumor
0.2
916
Normal
0.2
135
Tumor
0.2
271
Tumor
0.2
467
Tumor
0.2
686
Normal
0.2
864
Normal
0.2
113
Tumor
0.2
963
Tumor
0.2
567
Tumor
0.1
943
Tumor
0.1
494
Normal
0.1
217
Tumor
0.1
823
Tumor
0.1
534
Normal
0.1
192
Normal
0.1
484
Normal
0.1
461
Tumor
0.1
926
Normal
0.1
452
Normal
0.1
913
Tumor
0.1
862
Normal
0.1
331
Tumor
0.1
695
Tumor
0.1
297
Tumor
0.1
224
Normal
0.1
124
Normal
0.1
1044
Normal
0.1
918
Normal
0.1
451
Tumor
0.1
882
Normal
0.1
866
Normal
0.1
1042
Normal
0.1
187
Tumor
0.1
443
Tumor
0.1
311
Tumor
0.1
227
Tumor
0.1
816
Normal
0.1
696
Normal
0.1
343
Tumor
0.1
395
Tumor
0.1
814
Normal
0.1
546
Normal
0.1
883
Tumor
0.1
533
Tumor
0.1
1046
Normal
0.1
478
Normal
0.1
218
Normal
0.1
327
Tumor
0.1
328
Normal
0.1
142
Normal
0.0
415
Tumor
0.0
528
Normal
0.0
724
Normal
0.0
1028
Normal
0.0
778
Normal
0.0
925
Tumor
0.0
283
Tumor
0.0
756
Normal
0.0
367
Tumor
0.0
286
Normal
0.0
488
Normal
0.0
128
Normal
0.0
786
Normal
0.0
471
Tumor
0.0
191
Tumor
0.0
884
Normal
0.0
617
Tumor
0.0
474
Normal
0.0
813
Tumor
0.0
364
Normal
0.0
434
Normal
0.0
716
Normal
0.0
111
Normal
0.0
647
Tumor
0.0
938
Normal
0.0
524
Normal
0.0
554
Normal
0.0
385
Tumor
0.0
728
Normal
0.0
257
Tumor
0.0
628
Normal
0.0
313
Tumor
0.0
141
Tumor
0.0
146
Normal
0.0
213
Tumor
0.0
956
Normal
0.0
462
Normal
0.0
472
Normal
0.0
663
Tumor
0.0
981
Tumor
0.0
196
Normal
0.0
223
Tumor
0.0
954
Normal
0.0
952
Normal
0.0
228
Normal
0.0
861
Tumor
-0.1
411
Tumor
-0.1
738
Normal
-0.1
262
Normal
-0.1
912
Normal
-0.1
924
Normal
-0.1
365
Tumor
-0.1
537
Tumor
-0.1
911
Tumor
-0.1
433
Tumor
-0.1
966
Normal
-0.1
1041
Tumor
-0.1
968
Normal
-0.1
444
Normal
-0.1
636
Normal
-0.1
497
Tumor
-0.1
722
Normal
-0.1
126
Normal
-0.1
627
Tumor
-0.1
416
Normal
-0.1
616
Normal
-0.1
723
Tumor
-0.1
1016
Normal
-0.1
984
Normal
-0.1
698
Normal
-0.1
421
Tumor
-0.1
268
Normal
-0.1
573
Tumor
-0.1
185
Tumor
-0.1
516
Normal
-0.1
436
Normal
-0.1
214
Normal
-0.1
261
Tumor
-0.1
982
Normal
-0.1
136
Normal
-0.1
526
Normal
-0.1
284
Normal
-0.1
867
Tumor
-0.1
1022
Normal
-0.1
745
Tumor
-0.1
746
Normal
-0.1
517
Tumor
-0.1
1027
Tumor
-0.1
482
Normal
-0.1
493
Tumor
-0.1
114
Normal
-0.1
1026
Normal
-0.1
525
Tumor
-0.1
742
Normal
-0.1
951
Tumor
-0.1
431
Tumor
-0.1
368
Normal
-0.1
312
Normal
-0.1
432
Normal
-0.1
957
Tumor
-0.1
618
Normal
-0.1
714
Normal
-0.1
413
Tumor
-0.1
518
Normal
-0.1
145
Tumor
-0.1
914
Normal
-0.2
465
Tumor
-0.2
513
Tumor
-0.2
965
Tumor
-0.2
362
Normal
-0.2
878
Normal
-0.2
944
Normal
-0.2
1014
Normal
-0.2
258
Normal
-0.2
448
Normal
-0.2
777
Tumor
-0.2
137
Tumor
-0.2
272
Normal
-0.2
744
Normal
-0.2
741
Tumor
-0.2
356
Normal
-0.2
384
Normal
-0.2
922
Normal
-0.2
635
Tumor
-0.2
983
Tumor
-0.2
473
Tumor
-0.2
953
Tumor
-0.2
1043
Tumor
-0.2
967
Tumor
-0.2
955
Tumor
-0.2
386
Normal
-0.2
412
Normal
-0.2
435
Tumor
-0.2
672
Normal
-0.2
394
Normal
-0.2
222
Normal
-0.2
425
Tumor
-0.2
662
Normal
-0.2
231
Tumor
-0.2
615
Tumor
-0.2
857
Tumor
-0.2
387
Tumor
-0.2
314
Normal
-0.2
481
Tumor
-0.2
958
Normal
-0.2
976
Normal
-0.3
353
Tumor
-0.3
446
Normal
-0.3
648
Normal
-0.3
852
Normal
-0.3
642
Normal
-0.3
138
Normal
-0.3
188
Normal
-0.3
127
Tumor
-0.3
665
Tumor
-0.3
278
Normal
-0.3
396
Normal
-0.3
858
Normal
-0.3
298
Normal
-0.3
978
Normal
-0.3
357
Tumor
-0.3
964
Normal
-0.3
423
Tumor
-0.3
477
Tumor
-0.3
824
Normal
-0.3
376
Normal
-0.3
392
Normal
-0.3
514
Normal
-0.3
366
Normal
-0.3
515
Tumor
-0.3
383
Tumor
-0.3
1021
Tumor
-0.3
344
Normal
-0.3
361
Tumor
-0.4
427
Tumor
-0.4
671
Tumor
-0.4
132
Normal
-0.4
661
Tumor
-0.4
186
Normal
-0.4
1032
Normal
-0.4
388
Normal
-0.4
172
Normal
-0.4
422
Normal
-0.4
727
Tumor
-0.4
232
Normal
-0.4
148
Normal
-0.4
162
Normal
-0.4
112
Tumor
-0.4
424
Normal
-0.4
414
Normal
-0.4
664
Normal
-0.4
123
Tumor
-0.4
428
Normal
-0.4
818
Normal
-0.5
352
Normal
-0.5
391
Tumor
-0.5
332
Normal
-0.5
426
Normal
-0.5
574
Normal
-0.6
358
Normal
-0.6
558
Normal
-0.6
568
Normal
-0.6
915
Tumor
-0.6
563
Tumor
-0.6
564
Normal
-0.6
572
Normal
-0.7
342
Normal
-0.7
341
Tumor
-0.7
666
Normal
-0.7
171
Tumor
-0.7
571
Tumor
-0.8
354
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
