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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA52 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
944.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5866.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3252.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2979.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2689.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2681.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2539.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2441.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2361.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2194.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2124.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2124.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2110.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2082.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2051.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2030.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2009.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1991.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1975.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1961.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1821.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1820.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1813.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1753.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1751.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1689.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1681.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1664.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1617.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1596.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1577.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1533.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1517.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1492.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1460.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1452.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1430.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1427.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1425.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1410.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1406.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1402.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1395.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1392.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1360.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1359.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1348.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1335.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1327.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1322.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1318.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1313.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1309.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1294.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1293.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1273.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1270.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1263.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1262.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1260.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1244.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1238.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1213.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1207.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1207.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1206.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1204.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1201.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1200.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1196.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1183.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1181.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1180.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1177.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1171.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1164.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1158.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1156.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1154.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1145.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1134.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1131.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1126.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1119.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1118.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1117.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1113.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1109.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1107.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1103.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1101.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1101.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1096.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1092.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1092.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1090.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1089.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1073.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1066.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1062.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1059.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1050.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1050.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1043.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1034.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1026.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1025.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1022.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1022.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1020.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1015.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1014.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1011.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1011.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1006.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1000.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
993.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
992.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
989.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
989.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
973.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
972.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
969.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
966.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
966.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
966.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
957.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
956.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
952.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
951.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
948.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
934.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
932.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
922.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
922.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
918.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
916.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
910.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
910.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
909.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
907.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
905.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
905.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
898.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
888.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
887.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
887.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
885.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
880.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
872.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
871.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
870.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
865.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
865.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
863.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
858.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
858.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
856.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
848.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
845.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
839.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
838.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
838.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
836.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
835.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
833.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
833.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
832.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
830.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
830.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
830.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
829.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
828.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
826.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
825.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
823.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
823.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
820.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
819.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
819.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
816.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
815.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
815.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
810.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
809.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
809.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
809.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
806.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
804.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
801.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
801.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
800.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
800.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
795.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
791.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
789.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
789.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
786.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
785.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
784.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
783.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
781.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
780.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
778.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
775.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
775.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
771.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
768.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
768.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
767.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
766.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
759.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
759.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
753.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
753.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
752.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
752.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
750.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
748.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
747.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
746.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
743.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
742.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
741.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
741.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
738.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
738.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
736.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
735.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
735.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
732.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
730.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
729.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
728.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
725.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
724.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
720.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
716.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
715.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
713.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
712.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
711.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
708.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
706.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
705.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
699.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
697.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
696.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
696.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
692.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
692.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
689.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
688.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
687.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
685.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
683.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
681.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
678.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
678.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
673.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
671.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
671.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
666.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
664.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
663.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
662.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
662.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
662.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
661.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
658.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
651.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
651.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
649.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
649.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
646.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
645.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
645.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
641.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
640.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
640.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
637.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
636.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
632.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
628.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
628.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
627.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
627.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
626.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
622.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
619.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
619.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
618.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
614.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
610.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
604.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
600.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
600.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
600.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
599.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
599.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
592.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
587.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
587.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
583.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
579.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
579.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
578.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
576.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
575.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
573.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
572.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
567.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
562.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
562.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
562.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
558.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
558.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
555.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
553.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
552.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
546.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
545.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
544.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
539.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
538.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
527.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
524.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
515.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
515.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
515.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
511.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
509.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
505.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
504.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
502.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
501.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
497.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
496.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
496.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
492.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
479.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
479.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
478.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
475.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
473.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
472.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
465.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
458.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
457.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
456.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
451.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
449.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
447.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
442.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
428.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
425.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
406.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
402.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
381.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
364.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
360.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA52 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
134.6
Number of samples
231
Samples
Sample
Description
TPM
DO48725
0 years, male, NA, stage:1, alive, 780 days
882.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
713.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
553.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
460.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
392.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
382.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
373.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
319.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
310.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
286.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
283.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
282.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
268.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
268.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
255.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
245.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
227.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
226.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
224.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
218.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
216.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
208.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
207.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
201.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
198.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
197.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
197.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
196.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
193.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
187.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
187.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
180.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
176.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
176.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
175.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
171.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
171.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
169.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
169.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
168.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
165.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
165.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
165.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
165.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
162.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
162.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
162.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
161.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
161.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
157.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
156.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
154.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
153.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
152.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
152.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
151.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
151.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
150.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
149.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
148.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
148.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
148.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
145.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
144.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
142.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
141.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
141.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
139.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
138.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
138.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
138.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
137.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
137.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
136.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
134.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
134.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
133.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
133.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
132.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
131.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
131.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
131.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
131.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
130.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
130.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
130.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
127.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
126.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
125.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
125.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
125.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
125.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
124.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
123.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
123.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
122.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
121.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
121.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
120.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
120.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
120.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
119.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
119.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
118.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
117.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
117.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
117.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
117.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
114.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
114.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
112.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
112.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
111.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
111.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
111.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
110.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
109.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
109.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
109.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
109.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
107.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
107.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
106.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
106.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
105.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
105.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
105.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
105.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
104.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
104.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
103.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
103.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
102.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
102.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
101.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
101.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
101.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
101.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
100.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
100.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
99.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
99.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
99.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
99.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
99.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
98.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
98.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
98.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
98.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
97.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
96.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
96.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
96.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
95.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
95.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
95.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
95.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
94.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
93.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
93.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
92.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
92.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
91.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
91.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
91.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
91.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
90.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
90.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
89.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
88.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
88.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
87.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
86.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
86.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
85.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
85.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
85.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
84.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
84.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
83.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
83.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
83.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
82.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
82.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
82.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
81.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
81.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
80.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
80.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
79.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
79.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
76.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
76.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
74.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
74.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
74.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
73.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
72.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
71.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
71.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
68.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
68.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
68.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
68.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
67.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
67.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
65.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
64.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
64.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
62.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
57.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
1.8
1041
Tumor
1.3
911
Tumor
1.1
145
Tumor
0.9
1045
Tumor
0.9
533
Tumor
0.8
857
Tumor
0.5
525
Tumor
0.5
873
Tumor
0.4
267
Tumor
0.4
427
Tumor
0.4
415
Tumor
0.4
478
Normal
0.4
1025
Tumor
0.3
1031
Tumor
0.3
131
Tumor
0.3
473
Tumor
0.3
917
Tumor
0.3
497
Tumor
0.3
471
Tumor
0.3
545
Tumor
0.3
537
Tumor
0.3
191
Tumor
0.3
955
Tumor
0.2
937
Tumor
0.2
524
Normal
0.2
695
Tumor
0.2
698
Normal
0.2
958
Normal
0.2
523
Tumor
0.2
553
Tumor
0.2
964
Normal
0.2
535
Tumor
0.2
355
Tumor
0.2
1044
Normal
0.2
1013
Tumor
0.2
481
Tumor
0.2
756
Normal
0.2
477
Tumor
0.2
925
Tumor
0.2
1046
Normal
0.2
484
Normal
0.2
884
Normal
0.2
1026
Normal
0.2
538
Normal
0.2
926
Normal
0.2
1032
Normal
0.2
534
Normal
0.2
865
Tumor
0.2
777
Tumor
0.2
921
Tumor
0.2
498
Normal
0.2
517
Tumor
0.2
977
Tumor
0.2
685
Tumor
0.2
1027
Tumor
0.2
488
Normal
0.2
482
Normal
0.2
965
Tumor
0.2
882
Normal
0.1
412
Normal
0.1
823
Tumor
0.1
554
Normal
0.1
536
Normal
0.1
494
Normal
0.1
513
Tumor
0.1
211
Tumor
0.1
715
Tumor
0.1
938
Normal
0.1
1043
Tumor
0.1
1042
Normal
0.1
227
Tumor
0.1
516
Normal
0.1
878
Normal
0.1
223
Tumor
0.1
912
Normal
0.1
492
Normal
0.1
363
Tumor
0.1
493
Tumor
0.1
546
Normal
0.1
951
Tumor
0.1
483
Tumor
0.1
984
Normal
0.1
472
Normal
0.1
714
Normal
0.1
514
Normal
0.1
966
Normal
0.1
123
Tumor
0.1
518
Normal
0.1
1021
Tumor
0.1
356
Normal
0.1
963
Tumor
0.1
212
Normal
0.1
915
Tumor
0.1
976
Normal
0.1
1028
Normal
0.1
816
Normal
0.1
954
Normal
0.1
328
Normal
0.1
957
Tumor
0.1
224
Normal
0.1
868
Normal
0.1
515
Tumor
0.1
737
Tumor
0.1
1022
Normal
0.1
863
Tumor
0.1
968
Normal
0.1
967
Tumor
0.1
858
Normal
0.1
364
Normal
0.1
956
Normal
0.1
528
Normal
0.1
487
Tumor
0.1
327
Tumor
0.1
462
Normal
0.1
746
Normal
0.1
778
Normal
0.1
1014
Normal
0.1
975
Tumor
0.1
722
Normal
0.1
923
Tumor
0.1
924
Normal
0.1
686
Normal
0.1
983
Tumor
0.1
862
Normal
0.1
721
Tumor
0.1
527
Tumor
0.1
952
Normal
0.1
944
Normal
0.0
866
Normal
0.0
738
Normal
0.0
425
Tumor
0.0
474
Normal
0.0
786
Normal
0.0
716
Normal
0.0
978
Normal
0.0
981
Tumor
0.0
696
Normal
0.0
922
Normal
0.0
817
Tumor
0.0
874
Normal
0.0
697
Tumor
0.0
411
Tumor
0.0
448
Normal
0.0
261
Tumor
0.0
861
Tumor
0.0
883
Tumor
0.0
867
Tumor
0.0
916
Normal
0.0
918
Normal
0.0
852
Normal
0.0
616
Normal
0.0
723
Tumor
0.0
416
Normal
0.0
431
Tumor
0.0
743
Tumor
0.0
142
Normal
0.0
663
Tumor
0.0
785
Tumor
0.0
228
Normal
0.0
818
Normal
0.0
741
Tumor
0.0
864
Normal
0.0
881
Tumor
0.0
727
Tumor
0.0
744
Normal
0.0
286
Normal
0.0
824
Normal
0.0
284
Normal
0.0
557
Tumor
0.0
914
Normal
0.0
647
Tumor
0.0
526
Normal
0.0
745
Tumor
0.0
461
Tumor
0.0
572
Normal
0.0
221
Tumor
0.0
851
Tumor
0.0
713
Tumor
0.0
558
Normal
0.0
728
Normal
0.0
617
Tumor
0.0
285
Tumor
0.0
742
Normal
0.0
982
Normal
0.0
943
Tumor
0.0
283
Tumor
-0.1
755
Tumor
-0.1
724
Normal
-0.1
385
Tumor
-0.1
815
Tumor
-0.1
447
Tumor
-0.1
146
Normal
-0.1
135
Tumor
-0.1
375
Tumor
-0.1
573
Tumor
-0.1
1016
Normal
-0.1
953
Tumor
-0.1
1015
Tumor
-0.1
137
Tumor
-0.1
147
Tumor
-0.1
455
Tumor
-0.1
312
Normal
-0.1
298
Normal
-0.1
128
Normal
-0.1
466
Normal
-0.2
443
Tumor
-0.2
376
Normal
-0.2
628
Normal
-0.2
877
Tumor
-0.2
563
Tumor
-0.2
311
Tumor
-0.2
214
Normal
-0.2
141
Tumor
-0.2
192
Normal
-0.2
187
Tumor
-0.2
648
Normal
-0.2
218
Normal
-0.2
271
Tumor
-0.2
351
Tumor
-0.2
196
Normal
-0.2
138
Normal
-0.2
185
Tumor
-0.2
465
Tumor
-0.2
352
Normal
-0.2
262
Normal
-0.2
664
Normal
-0.2
568
Normal
-0.2
126
Normal
-0.2
132
Normal
-0.2
814
Normal
-0.2
564
Normal
-0.2
386
Normal
-0.2
342
Normal
-0.2
422
Normal
-0.2
213
Tumor
-0.3
428
Normal
-0.3
384
Normal
-0.3
277
Tumor
-0.3
362
Normal
-0.3
272
Normal
-0.3
368
Normal
-0.3
395
Tumor
-0.3
136
Normal
-0.3
222
Normal
-0.3
217
Tumor
-0.3
464
Normal
-0.3
278
Normal
-0.3
467
Tumor
-0.3
332
Normal
-0.3
445
Tumor
-0.3
186
Normal
-0.3
297
Tumor
-0.3
435
Tumor
-0.3
424
Normal
-0.3
188
Normal
-0.3
111
Normal
-0.3
436
Normal
-0.3
414
Normal
-0.3
258
Normal
-0.3
257
Tumor
-0.3
353
Tumor
-0.3
127
Tumor
-0.3
433
Tumor
-0.3
574
Normal
-0.3
444
Normal
-0.3
361
Tumor
-0.3
618
Normal
-0.3
314
Normal
-0.3
344
Normal
-0.3
232
Normal
-0.3
365
Tumor
-0.3
434
Normal
-0.3
161
Tumor
-0.3
367
Tumor
-0.3
426
Normal
-0.3
366
Normal
-0.3
456
Normal
-0.3
567
Tumor
-0.3
662
Normal
-0.3
432
Normal
-0.3
114
Normal
-0.3
113
Tumor
-0.4
394
Normal
-0.4
813
Tumor
-0.4
162
Normal
-0.4
392
Normal
-0.4
396
Normal
-0.4
468
Normal
-0.4
148
Normal
-0.4
615
Tumor
-0.4
491
Tumor
-0.4
661
Tumor
-0.4
421
Tumor
-0.4
571
Tumor
-0.4
391
Tumor
-0.4
388
Normal
-0.4
383
Tumor
-0.4
268
Normal
-0.4
666
Normal
-0.4
112
Tumor
-0.4
452
Normal
-0.4
343
Tumor
-0.4
354
Normal
-0.4
231
Tumor
-0.4
636
Normal
-0.4
641
Tumor
-0.4
463
Tumor
-0.4
387
Tumor
-0.4
672
Normal
-0.4
413
Tumor
-0.4
171
Tumor
-0.4
195
Tumor
-0.4
358
Normal
-0.4
172
Normal
-0.4
423
Tumor
-0.4
635
Tumor
-0.4
451
Tumor
-0.4
341
Tumor
-0.5
665
Tumor
-0.5
357
Tumor
-0.5
393
Tumor
-0.5
446
Normal
-0.5
671
Tumor
-0.5
124
Normal
-0.5
313
Tumor
-0.5
331
Tumor
-0.5
642
Normal
-0.6
125
Tumor
-0.6
627
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.