MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.0 nTPM
HPA Brain:201.0 nTPM
GTEx:62.0 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:48.3 nTPM
Mouse:66.9 nTPM
Allen mouse:13.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 201.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.8
2586 Male, age 75, left hemisphere 182.3
2666 Male, age 74, left hemisphere 141.5
2828 Female, age 72, unknown 115.8
1830 Male, age 51, unknown 110.8
1833 Male, age 53, unknown 110.0
2411 Female, age 72, unknown 108.2
1827 Male, age 72, unknown 106.9
1870 Female, age 42, unknown 99.9
2219 Male, age 76, both hemispheres 96.0
2019 Male, age 18, unknown 86.3
Dorsal raphe nucleus
nTPM: 125.4
2047 Male, age 72, unknown 166.2
2750 Male, age 76, both hemispheres 126.0
2298 Female, age 72, unknown 123.4
1828 Male, age 53, unknown 111.4
2016 Female, age 72, unknown 99.9
Inferior colliculus
nTPM: 111.2
2849 Male, age 72, unknown 122.6
1848 Female, age 42, unknown 120.0
1890 Male, age 53, unknown 104.3
2097 Female, age 72, unknown 98.0
Median raphe nucleus
nTPM: 158.2
2220 Male, age 76, midline 158.2
Periaquaductal grey, anterior
nTPM: 201.0
1947 Male, age 18, unknown 273.2
2502 Female, age 75, unknown 183.0
1795 Male, age 51, unknown 146.8
Periaquaductal grey, dorsal
nTPM: 108.0
1840 Male, age 53, unknown 128.7
2464 Female, age 72, unknown 112.7
2850 Male, age 76, both hemispheres 107.4
1831 Male, age 72, unknown 83.3
Periaquaductal grey, lateral
nTPM: 101.4
2140 Male, age 76, both hemispheres 113.8
2053 Male, age 18, unknown 105.9
2272 Male, age 74, both hemispheres 84.5
Pretectal area
nTPM: 98.9
2825 Male, age 18, unknown 126.5
2316 Male, age 76, right hemisphere 109.5
2407 Male, age 75, both hemispheres 106.0
2667 Female, age 75, unknown 104.5
2224 Female, age 72, unknown 102.3
1816 Male, age 51, unknown 96.8
2007 Male, age 72, unknown 95.5
1817 Female, age 42, unknown 89.4
1815 Male, age 53, unknown 89.3
2273 Male, age 74, both hemispheres 84.6
1944 Female, age 72, unknown 83.9
Red nucleus
nTPM: 111.4
2588 Male, age 74, left hemisphere 132.9
2769 Male, age 72, unknown 122.0
2584 Male, age 75, left hemisphere 120.0
2227 Male, age 72, unknown 118.8
1954 Female, age 42, unknown 114.1
1904 Male, age 53, unknown 112.8
1865 Male, age 51, unknown 110.4
2823 Male, age 76, right hemisphere 110.0
1821 Female, age 72, unknown 109.9
2503 Female, age 72, unknown 108.1
2725 Female, age 75, unknown 94.1
2785 Male, age 18, unknown 83.3
Substantia nigra
nTPM: 93.0
1916 Female, age 42, unknown 104.4
2583 Male, age 75, right hemisphere 102.3
2590 Female, age 75, unknown 101.6
1941 Male, age 53, unknown 99.8
1851 Male, age 51, unknown 97.6
2665 Male, age 74, both hemispheres 94.2
1889 Female, age 72, unknown 90.6
2241 Male, age 72, unknown 88.4
2699 Male, age 18, unknown 78.7
2409 Female, age 72, unknown 72.9
Superior colliculus
nTPM: 105.8
2664 Male, age 75, both hemispheres 153.9
1839 Male, age 51, unknown 127.8
2261 Male, age 18, unknown 111.4
2668 Female, age 75, unknown 110.9
1796 Male, age 53, unknown 105.3
1895 Male, age 76, right hemisphere 102.3
2587 Male, age 74, left hemisphere 96.8
2087 Female, age 72, unknown 88.5
1995 Male, age 72, unknown 86.0
1913 Female, age 42, unknown 75.1
Ventral tegmental area
nTPM: 97.6
2410 Female, age 72, unknown 105.2
1942 Male, age 51, unknown 103.3
2223 Female, age 72, unknown 99.8
2021 Male, age 53, unknown 96.5
2218 Male, age 76, both hemispheres 93.3
1915 Female, age 42, unknown 87.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.0
Samples: 139

Max nTPM: 100.5
Min nTPM: 21.7
Std nTPM: 13.9
Median nTPM: 63.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 100.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 93.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 85.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 84.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 83.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 82.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 81.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 80.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 80.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 80.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.0
Samples: 4

Max nTPM: 51.2
Min nTPM: 29.1
Sample A Female 51.2
Sample B Female 30.5
Sample C Male 37.1
Sample D Male 29.1
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 67.3
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 34.8
Sample C Male 67.3
Sample D Male 62.6
Periaqueductal gray
nTPM: 41.4
Samples: 3

Max nTPM: 45.6
Min nTPM: 36.5
Sample B Female 42.1
Sample C Male 45.6
Sample D Male 36.5
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 59.5
Min nTPM: 22.5
Sample A Female 59.5
Sample B Female 22.5
Sample C Male 45.9
Sample D Male 49.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 69.2
Min nTPM: 64.6
Sample A Male 69.2
Sample B Male 65.0
Sample C Female 64.6
Sample D Female 69.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
69059974 Antisense, RP_050317_04_H07, Mouse strain C57BL/6J (56 days, male) 13.4

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