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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
34.0
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
26.4
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
25.8
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
25.1
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
24.8
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
24.5
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
20.4
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
20.1
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
19.4
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
18.8
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
18.3
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
17.4
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
16.7
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
16.7
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
16.2
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
15.9
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
15.8
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
15.5
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
15.3
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
14.9
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
14.5
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
13.8
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
13.8
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
13.7
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
13.2
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
13.1
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
13.1
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
13.0
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
12.9
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
12.9
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
12.8
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
12.7
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
11.8
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
11.6
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
11.6
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
11.3
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
11.2
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
10.6
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
10.5
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
10.5
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
10.4
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
10.1
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
9.7
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
9.6
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
9.5
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
9.4
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
9.3
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
9.1
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
9.0
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
8.6
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
8.2
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
8.0
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
7.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
7.5
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
6.3
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
6.3
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
6.2
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
6.2
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
4.7
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
4.5
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
4.0
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
3.4
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
3.0
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
45.8
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
28.7
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
27.5
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
27.2
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
26.8
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
25.3
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
25.3
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
24.7
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
24.6
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
24.2
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
23.8
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
23.7
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
23.7
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
23.6
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
23.6
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
23.5
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
23.3
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
23.3
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
23.0
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
22.9
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
22.6
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
22.6
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
22.5
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
22.3
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
22.3
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
22.3
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
22.3
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
22.3
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
22.2
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
22.0
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
22.0
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
22.0
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
21.9
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
21.9
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
21.9
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
21.8
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
21.7
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
21.6
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
21.6
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
21.4
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
21.3
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
21.2
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
21.2
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
21.1
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
21.1
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
21.0
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
21.0
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
21.0
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
20.8
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
20.7
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
20.7
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
20.6
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
20.5
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
20.4
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
20.4
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
20.3
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
20.2
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
20.2
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
20.2
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
20.0
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
20.0
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
19.9
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
19.9
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
19.9
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
19.8
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
19.8
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
19.8
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
19.7
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
19.7
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
19.7
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
19.6
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
19.6
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
19.5
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
19.5
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
19.5
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
19.5
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
19.4
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
19.3
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
19.3
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
19.3
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
19.3
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
19.3
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
19.3
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
19.3
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
19.2
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
19.2
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
19.1
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
19.1
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
19.1
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
19.0
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
19.0
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
18.9
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
18.9
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
18.9
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
18.8
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
18.8
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
18.8
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
18.8
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
18.7
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
18.7
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
18.7
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
18.6
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
18.6
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
18.6
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
18.5
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
18.5
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
18.5
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
18.5
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
18.5
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
18.5
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
18.5
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
18.4
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
18.4
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
18.4
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
18.4
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
18.4
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
18.4
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
18.3
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
18.3
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
18.3
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
18.3
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
18.2
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
18.2
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
18.2
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
18.1
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
18.1
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
18.1
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
18.1
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
18.1
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
18.0
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
18.0
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
18.0
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
18.0
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
18.0
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
18.0
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
17.9
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
17.9
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
17.9
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
17.9
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
17.8
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
17.8
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
17.8
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
17.7
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
17.7
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
17.7
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
17.7
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
17.6
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
17.6
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
17.6
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
17.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
17.6
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
17.5
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
17.5
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
17.5
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
17.5
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
17.5
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
17.4
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
17.4
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
17.4
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
17.4
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
17.3
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
17.3
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
17.2
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
17.2
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
17.2
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
17.2
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
17.2
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
17.2
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
17.1
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
17.1
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
17.1
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
17.1
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
17.0
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
17.0
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
17.0
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
17.0
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
17.0
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
17.0
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
16.9
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
16.9
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
16.8
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
16.8
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
16.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
16.8
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
16.8
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
16.7
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
16.7
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
16.7
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
16.7
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
16.6
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
16.6
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
16.6
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
16.6
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
16.6
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
16.5
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
16.5
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
16.5
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
16.4
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
16.4
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
16.4
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
16.4
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
16.4
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
16.3
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
16.3
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
16.3
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
16.2
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
16.2
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
16.1
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
16.1
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
16.1
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
16.1
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
16.1
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
16.1
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
16.0
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
16.0
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
16.0
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
16.0
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
16.0
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
15.9
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
15.9
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
15.9
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
15.9
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
15.8
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
15.8
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
15.8
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
15.8
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
15.8
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
15.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
15.8
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
15.7
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
15.7
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
15.7
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
15.7
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
15.7
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
15.6
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
15.6
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
15.6
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
15.6
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
15.5
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
15.5
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
15.5
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
15.5
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
15.5
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
15.5
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
15.5
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
15.5
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
15.5
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
15.4
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
15.4
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
15.4
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
15.4
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
15.3
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
15.3
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
15.2
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
15.2
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
15.2
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
15.2
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
15.2
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
15.2
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
15.2
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
15.2
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
15.1
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
15.1
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
15.1
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
15.1
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
15.1
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
15.1
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
15.1
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
15.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
15.0
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
15.0
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
15.0
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
15.0
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
15.0
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
15.0
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
14.9
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
14.9
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
14.9
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
14.9
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
14.9
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
14.9
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
14.7
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
14.7
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
14.7
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
14.7
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
14.6
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
14.6
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
14.5
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
14.5
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
14.5
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
14.5
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
14.5
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
14.5
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
14.4
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
14.4
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
14.3
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
14.3
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
14.3
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
14.2
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
14.2
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
14.1
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
14.1
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
14.1
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
14.1
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
14.0
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
14.0
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
14.0
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
14.0
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
13.8
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
13.8
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
13.8
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
13.8
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
13.7
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
13.7
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
13.7
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
13.6
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
13.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
13.6
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
13.5
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
13.5
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
13.5
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
13.5
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
13.5
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
13.4
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
13.4
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
13.4
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
13.4
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
13.3
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
13.3
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
13.3
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
13.2
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
13.2
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
13.2
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
13.2
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
13.2
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
13.1
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
13.0
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
13.0
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
13.0
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
13.0
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
13.0
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
13.0
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
13.0
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
12.9
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
12.9
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
12.8
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
12.8
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
12.8
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
12.8
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
12.8
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
12.8
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
12.7
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
12.7
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
12.7
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
12.7
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
12.6
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
12.6
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
12.6
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
12.5
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
12.4
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
12.4
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
12.4
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
12.4
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
12.4
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
12.4
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
12.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
12.3
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
12.3
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
12.2
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
12.2
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
12.2
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
12.2
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
12.2
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
12.2
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
12.2
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
12.2
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
12.2
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
12.2
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
12.2
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
12.1
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
12.1
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
12.1
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
12.1
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
12.0
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
12.0
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
12.0
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
11.9
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
11.9
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
11.9
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
11.8
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
11.8
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
11.8
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
11.7
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
11.7
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
11.7
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
11.7
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
11.6
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
11.5
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
11.5
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
11.4
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
11.4
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
11.4
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
11.3
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
11.3
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
11.3
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
11.3
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
11.3
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
11.2
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
11.2
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
11.2
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
11.2
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
11.1
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
11.1
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
11.1
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
11.0
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
11.0
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
11.0
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
10.8
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
10.8
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
10.8
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
10.8
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
10.7
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
10.7
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
10.7
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
10.7
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
10.7
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
10.6
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
10.5
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
10.4
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
10.4
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
10.3
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
10.3
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
10.3
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
9.9
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
9.9
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
9.9
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
9.9
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
9.9
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
9.7
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
9.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
9.7
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
9.6
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
9.5
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
9.5
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
9.4
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
9.4
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
9.4
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
9.4
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
9.4
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
9.4
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
9.4
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
9.4
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
9.3
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
9.3
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
9.2
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
9.2
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
9.2
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
9.1
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
9.1
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
9.0
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
9.0
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
9.0
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
8.8
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
8.8
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
8.7
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
8.6
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
8.6
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
8.6
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
8.5
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
8.5
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
8.4
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
8.3
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
8.3
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
8.2
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
8.2
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
8.2
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
8.0
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
7.8
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
7.8
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
7.6
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
7.4
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
7.4
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
7.4
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
7.4
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
7.4
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
7.4
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
7.2
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
7.2
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
7.2
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
7.1
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
7.0
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
6.9
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
6.9
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
6.9
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
6.6
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
6.4
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
6.3
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
6.3
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
6.2
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
6.1
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
5.9
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
5.6
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
5.6
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
5.4
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
5.4
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
4.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
4.5
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
4.3
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
3.8
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
3.8
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
3.7
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
3.5
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
3.4
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
3.0
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
2.8
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
2.6
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
2.2
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
2.2
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
2.1
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
1.9
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
37.0
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
34.0
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
28.3
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
23.8
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
23.5
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
23.1
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
22.9
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
22.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
22.6
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
22.5
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
22.2
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
22.2
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
22.1
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
22.1
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
22.0
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
21.7
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
21.4
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
21.2
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
21.1
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
21.0
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
20.9
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
20.8
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
20.6
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
20.4
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
20.0
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
20.0
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
19.9
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
19.7
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
19.7
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
19.6
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
19.6
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
19.5
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
19.2
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
19.2
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
19.2
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
19.1
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
19.1
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
18.9
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
18.8
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
18.4
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
18.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
18.0
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
18.0
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
17.8
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
17.8
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
17.8
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
17.8
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
17.7
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
17.6
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
17.6
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
17.6
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
17.5
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
17.3
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
17.1
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
17.0
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
16.9
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
16.9
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
16.9
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
16.9
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
16.7
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
16.5
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
16.1
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
16.0
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
16.0
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
15.9
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
15.7
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
15.7
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
15.4
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
15.3
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
15.2
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
14.9
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
14.9
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
14.6
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
14.3
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
14.2
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
13.8
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
13.6
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
13.4
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
13.4
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
13.3
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
13.0
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
12.8
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
12.7
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
12.6
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
12.5
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
12.4
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
11.9
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
11.8
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
11.7
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
11.5
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
10.6
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
10.5
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
10.3
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
9.8
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
9.4
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
8.8
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
8.5
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
8.1
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
8.1
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
56.6
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
48.6
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
48.2
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
42.4
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
41.8
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
40.0
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
39.6
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
38.6
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
38.4
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
37.7
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
36.8
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
36.6
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
36.6
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
34.9
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
34.4
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
33.4
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
33.1
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
32.8
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
32.6
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
32.1
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
31.3
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
30.6
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
30.5
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
30.3
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
28.2
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
27.9
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
27.8
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
27.7
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
27.7
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
27.5
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
27.4
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
27.3
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
26.8
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
26.4
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
26.0
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
25.9
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
25.8
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
25.6
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
25.5
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
25.3
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
25.3
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
25.2
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
24.8
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
24.7
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
24.7
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
24.1
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
24.0
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
23.8
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
23.7
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
23.7
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
23.6
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
23.5
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
23.5
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
23.1
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
23.1
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
23.1
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
23.1
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
22.9
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
22.8
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
22.8
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
22.6
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
22.6
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
22.6
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
22.6
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
22.0
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
22.0
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
22.0
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
22.0
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
21.9
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
21.8
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.7
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
21.5
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
21.2
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
21.1
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
20.9
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
20.7
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
20.7
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
20.7
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
20.6
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
20.6
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
20.4
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
20.4
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
20.2
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
20.2
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
20.1
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
20.0
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
19.8
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
19.6
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
19.5
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
19.5
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
19.4
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
19.4
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
19.3
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
19.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
19.3
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
19.3
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
19.2
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
19.2
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
19.2
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
19.1
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
19.1
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
19.0
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
18.9
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
18.8
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
18.8
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
18.7
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
18.7
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
18.5
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
18.5
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
18.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
18.4
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
18.1
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
18.0
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
17.9
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
17.9
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
17.9
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
17.9
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
17.8
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
17.8
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
17.7
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
17.7
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
17.6
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
17.4
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
17.3
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
17.0
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
17.0
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
16.9
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
16.9
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
16.7
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
16.7
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
16.6
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
16.6
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
16.6
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
16.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
16.4
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
16.4
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
16.4
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
16.4
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
16.3
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
16.3
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
16.2
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
16.1
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
16.0
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
15.9
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
15.8
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
15.7
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
15.7
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
15.5
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
15.4
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
15.4
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.3
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
15.2
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
15.2
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
15.1
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
14.9
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
14.9
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
14.8
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
14.7
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
14.7
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
14.7
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
14.7
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
14.6
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
14.6
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
14.5
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
14.5
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
14.5
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
14.5
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
14.5
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
14.3
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
14.3
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
14.3
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
14.2
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
14.0
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
13.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
13.9
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
13.9
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
13.7
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
13.7
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
13.6
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
13.6
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
13.3
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
13.3
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
13.1
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
13.1
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.1
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
13.0
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
13.0
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
12.9
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
12.9
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
12.9
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
12.8
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
12.7
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
12.7
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
12.6
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
12.6
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
12.5
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
12.3
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
12.2
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
12.1
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
12.0
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
11.7
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
11.7
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
11.5
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
11.5
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
11.5
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
11.3
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
11.1
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
11.1
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
11.0
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
11.0
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
11.0
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
11.0
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
11.0
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
10.9
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
10.8
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
10.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
10.7
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
10.7
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
10.4
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
10.1
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
9.7
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
9.5
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
9.4
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
9.4
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
9.4
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
9.3
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
9.2
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
9.2
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
9.1
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
9.0
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
8.9
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
8.5
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
8.5
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
8.4
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
8.3
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
8.3
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
8.2
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
8.1
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
8.1
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
8.0
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
8.0
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
7.7
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
7.7
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
7.7
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
7.6
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
7.1
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
7.1
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
7.0
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
6.8
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
6.6
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
6.4
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
6.4
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
6.3
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
6.0
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
5.5
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
5.3
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
5.3
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
5.1
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
5.1
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
5.1
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
5.0
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
5.0
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
4.7
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
4.4
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
4.4
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
4.3
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
4.2
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
3.9
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
3.6
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
3.4
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
3.1
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
3.1
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
2.7
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
2.7
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
1.3
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
0.8
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
0.7
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
0.3
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
0.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
0.0
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0078660003
Tumor
1.1
CPT0079180003
Tumor
1.0
CPT0088970003
Tumor
0.6
CPT0088550004
Tumor
0.6
CPT0078800003
Tumor
0.5
CPT0002270011
Tumor
0.5
CPT0001340003
Tumor
0.4
CPT0009060003
Tumor
0.4
CPT0011410003
Tumor
0.4
CPT0092290003
Tumor
0.3
CPT0007320003
Tumor
0.3
CPT0024670003
Tumor
0.3
CPT0025230003
Tumor
0.3
CPT0025050003
Tumor
0.3
CPT0012280003
Tumor
0.3
CPT0086820003
Tumor
0.3
CPT0017850003
Tumor
0.3
CPT0014450004
Tumor
0.3
CPT0010110003
Tumor
0.2
CPT0012180003
Tumor
0.2
CPT0065430003
Tumor
0.2
CPT0081880003
Tumor
0.2
CPT0023350003
Tumor
0.2
CPT0021240003
Tumor
0.2
CPT0001180009
Tumor
0.2
CPT0001190001
Normal
0.2
CPT0000640003
Tumor
0.2
CPT0063640001
Normal
0.2
CPT0088480003
Tumor
0.2
CPT0025880003
Tumor
0.2
CPT0075130003
Tumor
0.2
CPT0017410003
Tumor
0.2
CPT0002350011
Tumor
0.2
CPT0012370003
Tumor
0.2
CPT0017450001
Normal
0.2
CPT0001540009
Tumor
0.2
CPT0001500009
Tumor
0.2
CPT0075170001
Normal
0.2
CPT0077320001
Normal
0.2
CPT0014160003
Tumor
0.1
CPT0086360003
Tumor
0.1
CPT0086950003
Tumor
0.1
CPT0088710001
Normal
0.1
CPT0063630003
Tumor
0.1
CPT0085670003
Tumor
0.1
CPT0078990003
Tumor
0.1
CPT0076350001
Normal
0.1
CPT0001220008
Tumor
0.1
CPT0026410003
Tumor
0.1
CPT0025290003
Tumor
0.1
CPT0079430001
Normal
0.1
CPT0092740003
Normal
0.1
CPT0079380003
Tumor
0.1
CPT0020120003
Tumor
0.1
CPT0086870003
Tumor
0.1
CPT0084590001
Normal
0.1
CPT0012670003
Tumor
0.1
CPT0001350001
Normal
0.1
CPT0081600003
Tumor
0.1
CPT0076330003
Tumor
0.1
CPT0066480003
Tumor
0.1
CPT0079230003
Tumor
0.1
CPT0001270001
Normal
0.1
CPT0078830003
Tumor
0.1
CPT0015810003
Tumor
0.1
CPT0019130003
Tumor
0.1
CPT0079270003
Tumor
0.1
CPT0089460004
Tumor
0.1
CPT0066470004
Tumor
0.1
CPT0082010001
Normal
0.1
CPT0075570001
Normal
0.1
CPT0078840001
Normal
0.1
CPT0081990003
Tumor
0.1
CPT0088570001
Normal
0.1
CPT0092190003
Normal
0.1
CPT0092160003
Tumor
0.1
CPT0086970003
Normal
0.1
CPT0025170003
Tumor
0.1
CPT0079410003
Tumor
0.1
CPT0065870003
Tumor
0.1
CPT0063320003
Tumor
0.1
CPT0088630003
Tumor
0.1
CPT0065810003
Tumor
0.1
CPT0065750003
Tumor
0.0
CPT0014470001
Normal
0.0
CPT0012290003
Normal
0.0
CPT0011240003
Tumor
0.0
CPT0065820001
Normal
0.0
CPT0025580004
Tumor
0.0
CPT0012090003
Normal
0.0
CPT0066520001
Normal
0.0
CPT0012920003
Normal
0.0
CPT0007860003
Tumor
0.0
CPT0018250001
Normal
0.0
CPT0077110003
Tumor
0.0
CPT0025110003
Tumor
0.0
CPT0012080003
Tumor
0.0
CPT0086830003
Normal
0.0
CPT0014370004
Tumor
0.0
CPT0012570003
Normal
0.0
CPT0009000003
Tumor
0.0
CPT0006530001
Normal
0.0
CPT0078510003
Tumor
0.0
CPT0010170001
Normal
0.0
CPT0000870016
Tumor
0.0
CPT0065690003
Tumor
0.0
CPT0092800003
Normal
0.0
CPT0079480003
Tumor
0.0
CPT0069000003
Tumor
0.0
CPT0015730003
Tumor
0.0
CPT0089020003
Tumor
0.0
CPT0000890001
Normal
0.0
CPT0075720003
Tumor
0.0
CPT0023360001
Normal
0.0
CPT0010120001
Normal
0.0
CPT0006440003
Tumor
0.0
CPT0009080003
Normal
0.0
CPT0012550003
Tumor
0.0
CPT0001260009
Tumor
0.0
CPT0069190001
Normal
0.0
CPT0025060001
Normal
0.0
CPT0075560003
Tumor
0.0
CPT0015910003
Tumor
0.0
CPT0089040001
Normal
0.0
CPT0086890003
Normal
0.0
CPT0087050003
Normal
0.0
CPT0064370003
Tumor
0.0
CPT0012640003
Normal
0.0
CPT0013790003
Normal
0.0
CPT0077140001
Normal
0.0
CPT0084560003
Tumor
0.0
CPT0012900004
Tumor
0.0
CPT0063330001
Normal
0.0
CPT0071150004
Tumor
0.0
CPT0006950001
Normal
0.0
CPT0092790003
Tumor
0.0
CPT0025610001
Normal
0.0
CPT0092730003
Tumor
0.0
CPT0026420001
Normal
0.0
CPT0066430001
Normal
0.0
CPT0000660001
Normal
-0.1
CPT0019990003
Tumor
-0.1
CPT0064400001
Normal
-0.1
CPT0009020003
Normal
-0.1
CPT0088920001
Normal
-0.1
CPT0065450001
Normal
-0.1
CPT0000790001
Normal
-0.1
CPT0088500001
Normal
-0.1
CPT0089480003
Normal
-0.1
CPT0025350003
Tumor
-0.1
CPT0092310003
Normal
-0.1
CPT0077490003
Tumor
-0.1
CPT0079000001
Normal
-0.1
CPT0069010001
Normal
-0.1
CPT0014350001
Normal
-0.1
CPT0002370001
Normal
-0.1
CPT0001550001
Normal
-0.1
CPT0077500001
Normal
-0.1
CPT0006900003
Tumor
-0.1
CPT0007870001
Normal
-0.1
CPT0007470001
Normal
-0.1
CPT0020020001
Normal
-0.1
CPT0078670001
Normal
-0.1
CPT0078940001
Normal
-0.1
CPT0079510001
Normal
-0.1
CPT0012770003
Normal
-0.1
CPT0006630003
Tumor
-0.1
CPT0019160001
Normal
-0.1
CPT0088780001
Normal
-0.1
CPT0065930003
Tumor
-0.1
CPT0023710001
Normal
-0.1
CPT0086370003
Normal
-0.1
CPT0087040003
Tumor
-0.1
CPT0077310003
Tumor
-0.1
CPT0088640003
Normal
-0.1
CPT0014130001
Normal
-0.1
CPT0006730001
Normal
-0.1
CPT0000780007
Tumor
-0.1
CPT0079300001
Normal
-0.1
CPT0025920001
Normal
-0.1
CPT0020130001
Normal
-0.1
CPT0001510001
Normal
-0.1
CPT0081620001
Normal
-0.1
CPT0078530001
Normal
-0.1
CPT0088760003
Tumor
-0.1
CPT0069160003
Tumor
-0.2
CPT0078930003
Tumor
-0.2
CPT0088690003
Tumor
-0.2
CPT0086030003
Tumor
-0.2
CPT0023690003
Tumor
-0.2
CPT0010160003
Tumor
-0.2
CPT0001230001
Normal
-0.2
CPT0024680001
Normal
-0.2
CPT0088900003
Tumor
-0.3
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
