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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
54.4
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
44.1
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
39.5
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
36.6
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
31.9
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
30.9
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
26.6
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
26.3
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
26.3
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
24.8
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
24.5
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
24.0
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
23.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
22.1
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
22.1
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
21.9
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
21.5
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
21.3
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
20.9
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
20.5
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
20.5
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
20.3
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
20.2
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
20.1
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
20.0
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
20.0
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
19.9
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
19.5
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
19.3
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
19.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
19.0
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
18.9
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
18.5
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
18.0
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
17.9
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
17.6
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
17.5
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
17.3
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
16.5
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
16.3
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.3
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
16.1
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
16.0
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
15.8
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
15.7
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
15.5
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
15.3
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
15.3
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
15.2
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
15.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
15.0
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
14.5
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
14.2
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
14.0
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
13.5
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
13.1
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
13.0
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
12.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
12.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
11.7
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.6
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
11.4
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
11.3
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
11.2
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
11.1
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
11.1
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
10.9
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
10.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
10.4
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
10.1
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
9.3
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
8.8
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
8.3
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
8.2
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
8.2
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.1
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
7.9
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
7.8
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
7.2
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
6.2
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
5.8
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
5.0
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
3.5
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
73 years, male, NA, stage:3, dead, 420 days
44.9
DO48737
52 years, male, NA, stage:1, alive, 720 days
35.6
DO23519
65 years, male, NA, stage:3, alive, 630 days
35.5
DO23508
79 years, female, NA, stage:2, alive, 390 days
35.2
DO23526
66 years, male, NA, stage:3, alive, 1050 days
35.1
DO23547
74 years, male, NA, stage:1, alive, 1020 days
30.0
DO23521
63 years, male, NA, stage:3, alive, 1110 days
29.3
DO45287
74 years, male, NA, stage:1, alive, 390 days
28.7
DO23515
71 years, male, NA, stage:2, alive, 1230 days
28.5
DO45189
85 years, female, NA, stage:2, alive, 1200 days
28.4
DO45217
69 years, female, NA, stage:3, dead, 270 days
28.4
DO50845
72 years, male, NA, stage:3, alive, 210 days
28.0
DO50814
83 years, male, NA, stage:3, alive, 420 days
27.8
DO45273
62 years, male, NA, stage:2, alive, 480 days
27.8
DO45275
65 years, male, NA, stage:3, dead, 10 days
27.4
DO23545
67 years, male, NA, stage:2, dead, 570 days
26.9
DO45307
54 years, female, NA, stage:4, dead, 240 days
26.8
DO45149
70 years, female, NA, stage:2, alive, 1260 days
26.5
DO50855
47 years, male, NA, stage:2, alive, 570 days
26.1
DO50791
79 years, female, NA, stage:1, dead, 480 days
25.7
DO50799
66 years, female, NA, stage:2, alive, 540 days
25.5
DO45241
49 years, male, NA, stage:1, alive, 1080 days
25.3
DO48747
62 years, male, NA, stage:3, alive, 540 days
25.0
DO23537
79 years, male, NA, stage:2, dead, 900 days
24.6
DO50809
56 years, male, NA, stage:3, dead, 720 days
24.6
DO45155
69 years, male, NA, stage:2, alive, 2160 days
24.5
DO48697
64 years, female, NA, stage:2, dead, 810 days
24.3
DO45209
70 years, male, NA, stage:4, alive, 1350 days
24.0
DO45249
57 years, male, NA, stage:1, alive, 630 days
23.8
DO50832
73 years, male, NA, stage:3, alive, 90 days
23.6
DO23532
71 years, female, NA, stage:1, alive, 960 days
23.5
DO50844
75 years, male, NA, stage:4, alive, 300 days
23.5
DO45193
68 years, female, NA, stage:4, dead, 120 days
22.6
DO23549
74 years, male, NA, stage:3, alive, 990 days
22.5
DO45159
65 years, male, NA, stage:3, alive, 1470 days
22.0
DO45105
61 years, male, NA, stage:1, alive, 1680 days
22.0
DO23512
60 years, male, NA, stage:1, alive, 1260 days
21.8
DO45107
63 years, female, NA, stage:2, alive, 1710 days
21.6
DO45277
64 years, male, NA, stage:3, alive, 600 days
21.5
DO48681
57 years, male, NA, stage:2, alive, 900 days
21.4
DO45145
78 years, male, NA, stage:3, dead, 60 days
21.3
DO45269
59 years, male, NA, stage:3, alive, 750 days
21.3
DO45096
69 years, male, NA, stage:2, dead, 1290 days
21.3
DO45137
38 years, male, NA, stage:1, alive, 1320 days
21.3
DO45099
46 years, male, NA, stage:3, alive, 1590 days
21.2
DO45259
65 years, male, NA, stage:3, alive, 330 days
21.1
DO23524
71 years, female, NA, stage:2, alive, 1050 days
20.9
DO45095
66 years, male, NA, stage:2, alive, 1620 days
20.8
DO23546
63 years, male, NA, stage:2, alive, 1050 days
20.8
DO50839
47 years, female, NA, stage:3, alive, 330 days
20.5
DO23528
45 years, female, NA, stage:2, alive, 1020 days
20.1
DO23543
63 years, male, NA, stage:2, alive, 1020 days
20.0
DO45301
56 years, male, NA, stage:2, dead, 1440 days
20.0
DO23523
52 years, male, NA, stage:3, alive, 1080 days
19.7
DO48751
68 years, male, NA, stage:2, dead, 480 days
19.6
DO50813
56 years, male, NA, stage:2, alive, 420 days
19.5
DO50857
72 years, male, NA, stage:2, alive, 210 days
19.4
DO50819
72 years, female, NA, stage:2, alive, 510 days
19.2
DO23525
71 years, male, NA, stage:4, alive, 1050 days
19.2
DO48732
73 years, male, NA, stage:3, alive, 630 days
19.2
DO45205
67 years, female, NA, stage:2, dead, 90 days
19.1
DO45289
78 years, female, NA, stage:3, alive, 360 days
19.1
DO45207
68 years, male, NA, stage:1, alive, 1050 days
19.1
DO45197
51 years, male, NA, stage:2, alive, 1170 days
19.0
DO45117
73 years, female, NA, stage:2, dead, 1110 days
18.9
DO48759
73 years, male, NA, stage:3, alive, 720 days
18.8
DO45179
78 years, female, NA, stage:2, alive, 600 days
18.8
DO23530
53 years, male, NA, stage:4, dead, 180 days
18.7
DO50783
62 years, male, NA, stage:3, alive, 480 days
18.5
DO48757
68 years, female, NA, stage:3, alive, 480 days
18.5
DO50816
63 years, male, NA, stage:2, alive, 390 days
18.5
DO23516
69 years, male, NA, stage:3, dead, 20 days
18.2
DO48717
54 years, male, NA, stage:4, dead, 180 days
18.2
DO45299
70 years, female, NA, stage:1, alive, 1440 days
18.1
DO48715
58 years, female, NA, stage:2, dead, 690 days
18.0
DO45305
66 years, male, NA, stage:4, alive, 300 days
18.0
DO23533
61 years, male, NA, stage:2, alive, 900 days
18.0
DO45245
75 years, female, NA, stage:2, dead, 240 days
17.7
DO50785
37 years, male, NA, stage:4, dead, 90 days
17.6
DO45297
61 years, female, NA, stage:4, dead, 1260 days
17.6
DO23518
67 years, male, NA, stage:2, alive, 1320 days
17.3
DO48736
76 years, female, NA, stage:1, alive, 600 days
17.3
DO45237
58 years, male, NA, stage:2, alive, 900 days
17.3
DO50817
75 years, male, NA, stage:2, alive, 390 days
17.2
DO45211
76 years, male, NA, stage:3, alive, 240 days
17.2
DO45283
60 years, male, NA, stage:3, alive, 510 days
17.2
DO45103
47 years, male, NA, stage:3, alive, 450 days
16.8
DO45121
61 years, male, NA, stage:3, alive, 1530 days
16.7
DO45279
67 years, male, NA, stage:3, alive, 1290 days
16.7
DO50825
70 years, male, NA, stage:2, alive, 390 days
16.7
DO23540
73 years, male, NA, stage:1, alive, 750 days
16.7
DO45263
67 years, male, NA, stage:3, dead, 270 days
16.6
DO45171
56 years, male, NA, stage:3, alive, 600 days
16.5
DO45092
62 years, male, NA, stage:4, dead, 1200 days
16.3
DO50815
62 years, male, NA, stage:3, alive, 150 days
16.3
DO45225
69 years, male, NA, stage:1, alive, 1050 days
16.3
DO50800
74 years, male, NA, stage:2, alive, 510 days
16.2
DO48723
73 years, male, NA, stage:1, alive, 600 days
16.1
DO48701
78 years, male, NA, stage:2, alive, 780 days
16.1
DO50806
70 years, male, NA, stage:4, alive, 540 days
16.0
DO48679
72 years, male, NA, stage:2, alive, 1200 days
15.9
DO45115
81 years, male, NA, stage:2, alive, 840 days
15.8
DO45091
56 years, male, NA, stage:2, dead, 1320 days
15.8
DO48706
72 years, male, NA, stage:2, alive, 870 days
15.7
DO45251
57 years, female, NA, stage:2, alive, 900 days
15.7
DO48700
78 years, female, NA, stage:2, alive, 810 days
15.6
DO45187
32 years, female, NA, stage:1, alive, 1260 days
15.6
DO23539
77 years, male, NA, stage:1, alive, 1110 days
15.6
DO48721
58 years, female, NA, stage:1, alive, 900 days
15.5
DO45221
75 years, female, NA, stage:4, dead, 390 days
15.5
DO50787
63 years, male, NA, stage:3, alive, 480 days
15.4
DO45165
75 years, male, NA, stage:2, alive, 690 days
15.3
DO45219
78 years, male, NA, stage:2, alive, 1080 days
15.3
DO45243
74 years, female, NA, stage:3, alive, 930 days
15.3
DO45183
72 years, female, NA, stage:2, dead, 570 days
15.3
DO23510
80 years, female, NA, stage:2, alive, 870 days
15.3
DO48682
72 years, female, NA, stage:3, dead, 120 days
15.3
DO45101
63 years, male, NA, stage:2, alive, 1680 days
15.2
DO50818
65 years, male, NA, stage:2, alive, 510 days
15.2
DO50802
49 years, male, NA, stage:2, alive, 930 days
15.2
DO45255
81 years, male, NA, stage:3, alive, 720 days
15.1
DO45285
59 years, male, NA, stage:3, alive, 480 days
14.9
DO48677
58 years, male, NA, stage:3, alive, 1140 days
14.9
DO45119
74 years, male, NA, stage:3, dead, 510 days
14.9
DO45199
86 years, female, NA, stage:2, alive, 1350 days
14.8
DO50840
49 years, male, NA, stage:2, alive, 330 days
14.8
DO50778
60 years, male, NA, stage:4, alive, 630 days
14.8
DO45131
53 years, male, NA, stage:4, dead, 360 days
14.7
DO45281
83 years, male, NA, stage:4, alive, 750 days
14.7
DO23552
80 years, female, NA, stage:1, alive, 810 days
14.6
DO23514
64 years, male, NA, stage:2, alive, 1290 days
14.6
DO45185
89 years, male, NA, stage:2, alive, 600 days
14.5
DO45213
58 years, male, NA, stage:1, alive, 1200 days
14.5
DO45125
58 years, male, NA, stage:3, alive, 1680 days
14.5
DO45139
63 years, male, NA, stage:3, alive, 1320 days
14.4
DO45097
69 years, male, NA, stage:3, alive, 1620 days
14.3
DO48693
71 years, male, NA, stage:2, alive, 900 days
14.3
DO23529
72 years, male, NA, stage:4, alive, 930 days
14.3
DO23509
60 years, male, NA, stage:3, dead, 780 days
14.3
DO48720
62 years, female, NA, stage:2, alive, 570 days
14.2
DO45265
73 years, male, NA, stage:3, alive, 1020 days
14.2
DO45239
42 years, male, NA, stage:2, alive, 870 days
14.2
DO48695
77 years, male, NA, stage:2, alive, 720 days
14.2
DO48730
73 years, female, NA, stage:2, alive, 630 days
14.1
DO50820
77 years, female, NA, stage:3, alive, 510 days
14.0
DO50776
75 years, male, NA, stage:1, alive, 690 days
14.0
DO45157
62 years, male, NA, stage:2, alive, 1980 days
13.9
DO45223
67 years, male, NA, stage:4, alive, 1020 days
13.9
DO50811
62 years, male, NA, stage:1, alive, 450 days
13.9
DO23534
60 years, male, NA, stage:2, alive, 840 days
13.9
DO23535
67 years, male, NA, stage:1, alive, 960 days
13.8
DO48719
80 years, male, NA, stage:2, alive, 690 days
13.8
DO45133
64 years, male, NA, stage:3, dead, 660 days
13.7
DO45153
77 years, female, NA, stage:2, alive, 1380 days
13.7
DO45303
62 years, female, NA, stage:3, alive, 990 days
13.7
DO48728
74 years, female, NA, stage:2, alive, 150 days
13.6
DO45141
73 years, male, NA, stage:2, alive, 1320 days
13.4
DO45191
61 years, female, NA, stage:2, alive, 1200 days
13.3
DO45177
81 years, female, NA, stage:3, alive, 1260 days
13.3
DO48743
69 years, female, NA, stage:2, alive, 570 days
13.2
DO23548
78 years, female, NA, stage:1, alive, 840 days
13.2
DO45123
78 years, female, NA, stage:2, dead, 570 days
13.2
DO45235
68 years, female, NA, stage:1, alive, 900 days
13.0
DO45215
65 years, male, NA, stage:2, alive, 1170 days
12.9
DO48741
64 years, male, NA, stage:3, alive, 240 days
12.9
DO45094
76 years, male, NA, stage:3, alive, 1650 days
12.5
DO227643
79 years, male, NA, stage:2, alive, 1260 days
12.4
DO48672
81 years, male, NA, stage:2, alive, 450 days
12.3
DO45135
77 years, male, NA, stage:1, alive, 1410 days
12.3
DO45231
84 years, male, NA, stage:2, alive, 930 days
12.2
DO45253
50 years, male, NA, stage:2, alive, 870 days
12.2
DO50804
81 years, male, NA, stage:2, alive, 720 days
12.2
DO50822
66 years, male, NA, stage:2, alive, 510 days
12.2
DO50803
62 years, female, NA, stage:1, alive, 540 days
12.2
DO50859
77 years, male, NA, stage:2, alive, 180 days
12.2
DO50807
67 years, male, NA, stage:1, alive, 540 days
12.2
DO50789
73 years, female, NA, stage:2, alive, 570 days
12.1
DO45229
74 years, male, NA, stage:1, alive, 990 days
12.1
DO45203
71 years, female, NA, stage:2, alive, 1170 days
11.9
DO48725
66 years, male, NA, stage:1, alive, 780 days
11.9
DO45173
63 years, male, NA, stage:3, alive, 1170 days
11.8
DO23511
83 years, female, NA, stage:3, dead, 180 days
11.8
DO227801
77 years, female, NA, stage:1, alive, 660 days
11.7
DO45113
58 years, male, NA, stage:3, alive, 1560 days
11.7
DO23544
67 years, male, NA, stage:2, alive, 960 days
11.7
DO45227
57 years, female, NA, stage:2, alive, 1020 days
11.6
DO23536
56 years, male, NA, stage:2, alive, 930 days
11.5
DO50850
74 years, male, NA, stage:3, alive, 720 days
11.5
DO50805
72 years, male, NA, stage:2, alive, 690 days
11.4
DO48746
76 years, male, NA, stage:3, alive, 570 days
11.3
DO45267
73 years, male, NA, stage:3, dead, 570 days
11.3
DO45261
74 years, male, NA, stage:3, alive, 990 days
11.2
DO50793
76 years, male, NA, stage:4, alive, 540 days
11.2
DO45257
46 years, male, NA, stage:3, alive, 810 days
11.1
DO45143
69 years, male, NA, stage:3, alive, 1290 days
11.1
DO45109
63 years, male, NA, stage:2, alive, 1590 days
10.4
DO23527
72 years, male, NA, stage:1, alive, 1050 days
10.3
DO48716
71 years, male, NA, stage:2, alive, 720 days
10.2
DO23542
66 years, male, NA, stage:3, alive, 960 days
10.2
DO50798
77 years, male, NA, stage:3, dead, 30 days
10.1
DO50829
78 years, male, NA, stage:3, alive, 570 days
10.1
DO45169
74 years, male, NA, stage:3, alive, 1350 days
10.1
DO45161
74 years, male, NA, stage:2, dead, 540 days
10.0
DO45163
76 years, male, NA, stage:2, alive, 960 days
9.9
DO45181
84 years, female, NA, stage:2, alive, 1200 days
9.8
DO48760
70 years, female, NA, stage:2, alive, 690 days
9.6
DO23550
69 years, male, NA, stage:1, alive, 990 days
9.4
DO48704
68 years, female, NA, stage:3, alive, 750 days
9.4
DO48742
76 years, male, NA, stage:2, alive, 600 days
9.3
DO50808
68 years, male, NA, stage:2, alive, 570 days
9.0
DO48733
72 years, male, NA, stage:2, alive, 600 days
9.0
DO45201
49 years, male, NA, stage:1, alive, 900 days
8.9
DO23538
67 years, male, NA, stage:2, alive, 450 days
8.9
DO48761
55 years, male, NA, stage:2, alive, 870 days
8.8
DO45195
62 years, male, NA, stage:1, alive, 390 days
8.8
DO45167
67 years, male, NA, stage:2, dead, 1440 days
8.8
DO48674
80 years, male, NA, stage:2, alive, 1260 days
8.6
DO45247
31 years, female, NA, stage:2, alive, 210 days
8.6
DO45129
61 years, male, NA, stage:3, alive, 1470 days
8.5
DO45093
71 years, male, NA, stage:2, dead, 720 days
8.1
DO48712
50 years, male, NA, stage:2, alive, 810 days
8.1
DO23513
76 years, male, NA, stage:3, alive, 1200 days
8.0
DO50774
68 years, female, NA, stage:2, alive, 720 days
7.9
DO45233
83 years, male, NA, stage:3, alive, 900 days
7.9
DO23541
65 years, male, NA, stage:2, alive, 930 days
7.5
DO45111
74 years, male, NA, stage:2, alive, 1590 days
7.3
DO23531
78 years, female, NA, stage:3, alive, 900 days
7.3
DO23517
62 years, male, NA, stage:2, alive, 1200 days
6.9
DO48727
81 years, female, NA, stage:2, dead, 390 days
6.1
DO23551
73 years, male, NA, stage:3, dead, 150 days
6.1
DO45175
74 years, male, NA, stage:2, alive, 1140 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
0.6
537
Tumor
0.6
125
Tumor
0.6
283
Tumor
0.6
473
Tumor
0.6
147
Tumor
0.5
375
Tumor
0.5
641
Tumor
0.4
257
Tumor
0.4
925
Tumor
0.4
123
Tumor
0.4
395
Tumor
0.4
131
Tumor
0.4
211
Tumor
0.4
957
Tumor
0.4
823
Tumor
0.4
471
Tumor
0.4
721
Tumor
0.4
271
Tumor
0.4
953
Tumor
0.4
533
Tumor
0.3
467
Tumor
0.3
545
Tumor
0.3
535
Tumor
0.3
135
Tumor
0.3
455
Tumor
0.3
921
Tumor
0.3
491
Tumor
0.3
213
Tumor
0.3
313
Tumor
0.3
536
Normal
0.3
434
Normal
0.3
743
Tumor
0.3
724
Normal
0.3
311
Tumor
0.2
221
Tumor
0.2
285
Tumor
0.2
917
Tumor
0.2
367
Tumor
0.2
1027
Tumor
0.2
443
Tumor
0.2
171
Tumor
0.2
421
Tumor
0.2
527
Tumor
0.2
573
Tumor
0.2
331
Tumor
0.2
557
Tumor
0.2
113
Tumor
0.2
965
Tumor
0.2
433
Tumor
0.2
785
Tumor
0.2
427
Tumor
0.2
617
Tumor
0.2
191
Tumor
0.2
387
Tumor
0.2
124
Normal
0.2
483
Tumor
0.2
187
Tumor
0.2
777
Tumor
0.2
411
Tumor
0.2
563
Tumor
0.2
553
Tumor
0.2
277
Tumor
0.2
217
Tumor
0.2
713
Tumor
0.2
231
Tumor
0.2
937
Tumor
0.2
525
Tumor
0.2
444
Normal
0.2
881
Tumor
0.2
813
Tumor
0.1
391
Tumor
0.1
227
Tumor
0.1
685
Tumor
0.1
1013
Tumor
0.1
817
Tumor
0.1
445
Tumor
0.1
431
Tumor
0.1
1031
Tumor
0.1
185
Tumor
0.1
262
Normal
0.1
383
Tumor
0.1
913
Tumor
0.1
492
Normal
0.1
916
Normal
0.1
126
Normal
0.1
461
Tumor
0.1
141
Tumor
0.1
978
Normal
0.1
697
Tumor
0.1
1021
Tumor
0.1
297
Tumor
0.1
493
Tumor
0.1
672
Normal
0.1
127
Tumor
0.1
671
Tumor
0.1
192
Normal
0.1
357
Tumor
0.1
975
Tumor
0.1
451
Tumor
0.1
815
Tumor
0.1
385
Tumor
0.1
161
Tumor
0.1
195
Tumor
0.1
188
Normal
0.1
341
Tumor
0.1
538
Normal
0.1
111
Normal
0.1
498
Normal
0.1
224
Normal
0.1
877
Tumor
0.1
145
Tumor
0.1
268
Normal
0.1
355
Tumor
0.1
146
Normal
0.1
814
Normal
0.1
567
Tumor
0.1
432
Normal
0.1
362
Normal
0.1
468
Normal
0.1
524
Normal
0.1
267
Tumor
0.1
741
Tumor
0.1
415
Tumor
0.1
361
Tumor
0.1
715
Tumor
0.1
1015
Tumor
0.0
128
Normal
0.0
627
Tumor
0.0
744
Normal
0.0
523
Tumor
0.0
223
Tumor
0.0
478
Normal
0.0
353
Tumor
0.0
686
Normal
0.0
393
Tumor
0.0
312
Normal
0.0
954
Normal
0.0
727
Tumor
0.0
463
Tumor
0.0
384
Normal
0.0
212
Normal
0.0
363
Tumor
0.0
661
Tumor
0.0
344
Normal
0.0
967
Tumor
0.0
883
Tumor
0.0
1016
Normal
0.0
332
Normal
0.0
413
Tumor
0.0
716
Normal
0.0
755
Tumor
0.0
414
Normal
0.0
114
Normal
0.0
955
Tumor
0.0
861
Tumor
0.0
138
Normal
0.0
666
Normal
0.0
352
Normal
0.0
218
Normal
0.0
951
Tumor
0.0
924
Normal
0.0
497
Tumor
0.0
1014
Normal
0.0
365
Tumor
0.0
867
Tumor
0.0
1045
Tumor
0.0
778
Normal
0.0
914
Normal
0.0
952
Normal
0.0
423
Tumor
0.0
435
Tumor
0.0
396
Normal
0.0
272
Normal
0.0
983
Tumor
0.0
742
Normal
0.0
984
Normal
0.0
1042
Normal
0.0
943
Tumor
0.0
515
Tumor
0.0
1041
Tumor
0.0
863
Tumor
0.0
284
Normal
0.0
911
Tumor
0.0
665
Tumor
0.0
351
Tumor
0.0
662
Normal
0.0
923
Tumor
0.0
137
Tumor
0.0
526
Normal
0.0
327
Tumor
0.0
571
Tumor
0.0
428
Normal
0.0
474
Normal
0.0
1025
Tumor
0.0
136
Normal
0.0
956
Normal
0.0
1028
Normal
0.0
328
Normal
0.0
944
Normal
0.0
1046
Normal
0.0
723
Tumor
-0.1
386
Normal
-0.1
884
Normal
-0.1
615
Tumor
-0.1
922
Normal
-0.1
926
Normal
-0.1
857
Tumor
-0.1
487
Tumor
-0.1
528
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.1
816
Normal
-0.1
354
Normal
-0.1
132
Normal
-0.1
258
Normal
-0.1
343
Tumor
-0.1
466
Normal
-0.1
392
Normal
-0.1
358
Normal
-0.1
824
Normal
-0.1
366
Normal
-0.1
112
Tumor
-0.1
214
Normal
-0.1
447
Tumor
-0.1
852
Normal
-0.1
1043
Tumor
-0.1
558
Normal
-0.1
448
Normal
-0.1
977
Tumor
-0.1
554
Normal
-0.1
314
Normal
-0.1
513
Tumor
-0.1
394
Normal
-0.1
874
Normal
-0.1
426
Normal
-0.1
728
Normal
-0.1
737
Tumor
-0.1
446
Normal
-0.1
976
Normal
-0.1
966
Normal
-0.1
494
Normal
-0.1
425
Tumor
-0.1
464
Normal
-0.1
647
Tumor
-0.1
574
Normal
-0.1
786
Normal
-0.1
1044
Normal
-0.1
628
Normal
-0.1
1032
Normal
-0.1
722
Normal
-0.1
368
Normal
-0.1
142
Normal
-0.1
915
Tumor
-0.1
912
Normal
-0.1
648
Normal
-0.1
424
Normal
-0.1
481
Tumor
-0.1
456
Normal
-0.1
756
Normal
-0.1
462
Normal
-0.1
422
Normal
-0.1
376
Normal
-0.1
746
Normal
-0.1
968
Normal
-0.1
261
Tumor
-0.1
517
Tumor
-0.1
222
Normal
-0.1
714
Normal
-0.1
516
Normal
-0.1
356
Normal
-0.1
278
Normal
-0.1
664
Normal
-0.1
477
Tumor
-0.1
858
Normal
-0.1
964
Normal
-0.1
364
Normal
-0.1
938
Normal
-0.1
882
Normal
-0.1
412
Normal
-0.2
488
Normal
-0.2
472
Normal
-0.2
981
Tumor
-0.2
172
Normal
-0.2
286
Normal
-0.2
865
Tumor
-0.2
298
Normal
-0.2
232
Normal
-0.2
416
Normal
-0.2
388
Normal
-0.2
186
Normal
-0.2
635
Tumor
-0.2
568
Normal
-0.2
663
Tumor
-0.2
162
Normal
-0.2
642
Normal
-0.2
873
Tumor
-0.2
982
Normal
-0.2
698
Normal
-0.2
868
Normal
-0.2
696
Normal
-0.2
546
Normal
-0.2
864
Normal
-0.2
958
Normal
-0.2
636
Normal
-0.2
518
Normal
-0.2
148
Normal
-0.2
228
Normal
-0.2
878
Normal
-0.2
1022
Normal
-0.2
818
Normal
-0.2
564
Normal
-0.2
196
Normal
-0.2
484
Normal
-0.2
436
Normal
-0.2
963
Tumor
-0.2
866
Normal
-0.3
1026
Normal
-0.3
514
Normal
-0.3
452
Normal
-0.3
482
Normal
-0.3
534
Normal
-0.3
618
Normal
-0.3
862
Normal
-0.3
572
Normal
-0.3
695
Tumor
-0.3
342
Normal
-0.3
745
Tumor
-0.4
616
Normal
-0.4
465
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
