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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
0.6
537
Tumor
0.6
125
Tumor
0.6
283
Tumor
0.6
473
Tumor
0.6
147
Tumor
0.5
375
Tumor
0.5
641
Tumor
0.4
257
Tumor
0.4
925
Tumor
0.4
123
Tumor
0.4
395
Tumor
0.4
131
Tumor
0.4
211
Tumor
0.4
957
Tumor
0.4
823
Tumor
0.4
471
Tumor
0.4
721
Tumor
0.4
271
Tumor
0.4
953
Tumor
0.4
533
Tumor
0.3
467
Tumor
0.3
545
Tumor
0.3
535
Tumor
0.3
135
Tumor
0.3
455
Tumor
0.3
921
Tumor
0.3
491
Tumor
0.3
213
Tumor
0.3
313
Tumor
0.3
536
Normal
0.3
434
Normal
0.3
743
Tumor
0.3
724
Normal
0.3
311
Tumor
0.2
221
Tumor
0.2
285
Tumor
0.2
917
Tumor
0.2
367
Tumor
0.2
1027
Tumor
0.2
443
Tumor
0.2
171
Tumor
0.2
421
Tumor
0.2
527
Tumor
0.2
573
Tumor
0.2
331
Tumor
0.2
557
Tumor
0.2
113
Tumor
0.2
965
Tumor
0.2
433
Tumor
0.2
785
Tumor
0.2
427
Tumor
0.2
617
Tumor
0.2
191
Tumor
0.2
387
Tumor
0.2
124
Normal
0.2
483
Tumor
0.2
187
Tumor
0.2
777
Tumor
0.2
411
Tumor
0.2
563
Tumor
0.2
553
Tumor
0.2
277
Tumor
0.2
217
Tumor
0.2
713
Tumor
0.2
231
Tumor
0.2
937
Tumor
0.2
525
Tumor
0.2
444
Normal
0.2
881
Tumor
0.2
813
Tumor
0.1
391
Tumor
0.1
227
Tumor
0.1
685
Tumor
0.1
1013
Tumor
0.1
817
Tumor
0.1
445
Tumor
0.1
431
Tumor
0.1
1031
Tumor
0.1
185
Tumor
0.1
262
Normal
0.1
383
Tumor
0.1
913
Tumor
0.1
492
Normal
0.1
916
Normal
0.1
126
Normal
0.1
461
Tumor
0.1
141
Tumor
0.1
978
Normal
0.1
697
Tumor
0.1
1021
Tumor
0.1
297
Tumor
0.1
493
Tumor
0.1
672
Normal
0.1
127
Tumor
0.1
671
Tumor
0.1
192
Normal
0.1
357
Tumor
0.1
975
Tumor
0.1
451
Tumor
0.1
815
Tumor
0.1
385
Tumor
0.1
161
Tumor
0.1
195
Tumor
0.1
188
Normal
0.1
341
Tumor
0.1
538
Normal
0.1
111
Normal
0.1
498
Normal
0.1
224
Normal
0.1
877
Tumor
0.1
145
Tumor
0.1
268
Normal
0.1
355
Tumor
0.1
146
Normal
0.1
814
Normal
0.1
567
Tumor
0.1
432
Normal
0.1
362
Normal
0.1
468
Normal
0.1
524
Normal
0.1
267
Tumor
0.1
741
Tumor
0.1
415
Tumor
0.1
361
Tumor
0.1
715
Tumor
0.1
1015
Tumor
0.0
128
Normal
0.0
627
Tumor
0.0
744
Normal
0.0
523
Tumor
0.0
223
Tumor
0.0
478
Normal
0.0
353
Tumor
0.0
686
Normal
0.0
393
Tumor
0.0
312
Normal
0.0
954
Normal
0.0
727
Tumor
0.0
463
Tumor
0.0
384
Normal
0.0
212
Normal
0.0
363
Tumor
0.0
661
Tumor
0.0
344
Normal
0.0
967
Tumor
0.0
883
Tumor
0.0
1016
Normal
0.0
332
Normal
0.0
413
Tumor
0.0
716
Normal
0.0
755
Tumor
0.0
414
Normal
0.0
114
Normal
0.0
955
Tumor
0.0
861
Tumor
0.0
138
Normal
0.0
666
Normal
0.0
352
Normal
0.0
218
Normal
0.0
951
Tumor
0.0
924
Normal
0.0
497
Tumor
0.0
1014
Normal
0.0
365
Tumor
0.0
867
Tumor
0.0
1045
Tumor
0.0
778
Normal
0.0
914
Normal
0.0
952
Normal
0.0
423
Tumor
0.0
435
Tumor
0.0
396
Normal
0.0
272
Normal
0.0
983
Tumor
0.0
742
Normal
0.0
984
Normal
0.0
1042
Normal
0.0
943
Tumor
0.0
515
Tumor
0.0
1041
Tumor
0.0
863
Tumor
0.0
284
Normal
0.0
911
Tumor
0.0
665
Tumor
0.0
351
Tumor
0.0
662
Normal
0.0
923
Tumor
0.0
137
Tumor
0.0
526
Normal
0.0
327
Tumor
0.0
571
Tumor
0.0
428
Normal
0.0
474
Normal
0.0
1025
Tumor
0.0
136
Normal
0.0
956
Normal
0.0
1028
Normal
0.0
328
Normal
0.0
944
Normal
0.0
1046
Normal
0.0
723
Tumor
-0.1
386
Normal
-0.1
884
Normal
-0.1
615
Tumor
-0.1
922
Normal
-0.1
926
Normal
-0.1
857
Tumor
-0.1
487
Tumor
-0.1
528
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.1
816
Normal
-0.1
354
Normal
-0.1
132
Normal
-0.1
258
Normal
-0.1
343
Tumor
-0.1
466
Normal
-0.1
392
Normal
-0.1
358
Normal
-0.1
824
Normal
-0.1
366
Normal
-0.1
112
Tumor
-0.1
214
Normal
-0.1
447
Tumor
-0.1
852
Normal
-0.1
1043
Tumor
-0.1
558
Normal
-0.1
448
Normal
-0.1
977
Tumor
-0.1
554
Normal
-0.1
314
Normal
-0.1
513
Tumor
-0.1
394
Normal
-0.1
874
Normal
-0.1
426
Normal
-0.1
728
Normal
-0.1
737
Tumor
-0.1
446
Normal
-0.1
976
Normal
-0.1
966
Normal
-0.1
494
Normal
-0.1
425
Tumor
-0.1
464
Normal
-0.1
647
Tumor
-0.1
574
Normal
-0.1
786
Normal
-0.1
1044
Normal
-0.1
628
Normal
-0.1
1032
Normal
-0.1
722
Normal
-0.1
368
Normal
-0.1
142
Normal
-0.1
915
Tumor
-0.1
912
Normal
-0.1
648
Normal
-0.1
424
Normal
-0.1
481
Tumor
-0.1
456
Normal
-0.1
756
Normal
-0.1
462
Normal
-0.1
422
Normal
-0.1
376
Normal
-0.1
746
Normal
-0.1
968
Normal
-0.1
261
Tumor
-0.1
517
Tumor
-0.1
222
Normal
-0.1
714
Normal
-0.1
516
Normal
-0.1
356
Normal
-0.1
278
Normal
-0.1
664
Normal
-0.1
477
Tumor
-0.1
858
Normal
-0.1
964
Normal
-0.1
364
Normal
-0.1
938
Normal
-0.1
882
Normal
-0.1
412
Normal
-0.2
488
Normal
-0.2
472
Normal
-0.2
981
Tumor
-0.2
172
Normal
-0.2
286
Normal
-0.2
865
Tumor
-0.2
298
Normal
-0.2
232
Normal
-0.2
416
Normal
-0.2
388
Normal
-0.2
186
Normal
-0.2
635
Tumor
-0.2
568
Normal
-0.2
663
Tumor
-0.2
162
Normal
-0.2
642
Normal
-0.2
873
Tumor
-0.2
982
Normal
-0.2
698
Normal
-0.2
868
Normal
-0.2
696
Normal
-0.2
546
Normal
-0.2
864
Normal
-0.2
958
Normal
-0.2
636
Normal
-0.2
518
Normal
-0.2
148
Normal
-0.2
228
Normal
-0.2
878
Normal
-0.2
1022
Normal
-0.2
818
Normal
-0.2
564
Normal
-0.2
196
Normal
-0.2
484
Normal
-0.2
436
Normal
-0.2
963
Tumor
-0.2
866
Normal
-0.3
1026
Normal
-0.3
514
Normal
-0.3
452
Normal
-0.3
482
Normal
-0.3
534
Normal
-0.3
618
Normal
-0.3
862
Normal
-0.3
572
Normal
-0.3
695
Tumor
-0.3
342
Normal
-0.3
745
Tumor
-0.4
616
Normal
-0.4
465
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
