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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
258.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
743.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
731.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
652.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
590.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
578.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
565.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
557.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
544.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
540.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
538.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
537.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
534.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
533.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
527.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
519.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
514.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
510.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
506.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
502.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
496.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
479.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
472.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
470.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
467.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
458.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
454.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
452.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
449.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
446.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
446.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
443.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
441.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
435.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
435.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
428.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
425.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
423.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
422.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
412.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
409.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
407.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
405.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
402.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
400.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
398.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
396.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
392.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
390.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
388.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
384.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
383.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
382.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
381.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
381.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
376.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
375.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
375.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
375.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
372.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
372.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
368.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
361.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
356.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
353.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
352.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
349.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
347.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
341.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
341.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
341.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
337.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
337.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
336.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
336.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
336.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
336.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
332.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
329.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
328.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
327.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
326.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
325.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
319.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
319.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
319.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
316.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
315.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
315.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
314.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
314.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
314.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
314.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
314.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
312.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
312.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
311.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
308.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
308.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
307.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
305.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
304.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
304.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
304.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
303.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
301.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
301.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
300.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
300.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
299.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
299.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
299.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
298.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
298.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
296.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
296.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
294.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
294.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
294.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
293.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
293.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
292.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
292.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
290.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
287.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
286.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
285.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
285.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
284.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
283.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
282.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
281.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
279.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
278.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
269.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
268.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
267.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
266.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
266.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
266.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
265.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
265.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
265.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
264.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
264.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
263.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
262.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
261.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
261.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
261.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
260.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
259.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
259.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
258.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
257.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
256.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
255.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
255.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
254.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
252.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
249.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
249.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
248.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
247.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
246.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
246.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
245.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
245.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
243.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
241.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
240.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
240.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
239.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
238.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
238.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
237.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
237.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
236.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
236.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
236.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
235.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
235.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
235.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
235.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
234.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
234.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
233.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
232.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
232.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
230.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
228.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
227.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
227.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
227.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
227.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
227.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
226.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
224.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
223.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
223.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
222.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
222.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
222.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
220.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
220.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
219.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
219.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
219.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
218.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
218.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
217.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
217.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
216.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
215.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
214.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
213.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
213.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
212.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
212.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
212.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
211.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
209.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
208.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
208.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
207.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
206.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
205.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
205.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
205.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
205.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
204.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
204.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
203.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
203.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
202.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
201.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
201.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
199.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
199.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
198.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
198.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
198.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
197.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
197.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
196.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
194.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
193.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
192.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
192.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
191.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
190.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
190.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
188.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
188.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
188.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
183.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
183.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
183.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
183.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
181.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
179.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
179.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
178.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
177.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
177.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
176.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
176.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
176.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
176.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
176.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
174.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
173.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
172.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
171.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
171.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
170.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
168.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
167.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
165.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
164.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
163.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
161.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
161.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
160.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
159.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
159.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
159.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
157.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
156.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
156.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
154.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
154.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
154.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
153.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
151.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
149.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
149.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
148.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
148.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
148.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
146.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
145.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
145.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
143.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
143.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
143.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
142.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
142.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
142.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
140.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
138.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
137.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
137.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
137.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
136.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
136.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
136.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
135.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
133.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
133.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
133.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
132.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
131.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
131.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
131.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
130.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
129.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
129.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
127.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
127.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
126.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
126.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
126.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
126.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
125.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
124.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
122.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
121.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
121.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
120.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
119.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
119.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
118.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
117.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
117.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
116.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
116.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
116.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
114.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
112.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
111.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
111.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
110.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
109.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
107.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
105.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
105.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
93.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
93.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
93.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
89.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
83.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
151.2
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
526.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
474.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
427.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
414.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
410.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
360.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
352.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
332.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
328.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
318.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
316.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
315.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
311.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
310.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
310.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
294.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
287.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
280.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
279.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
274.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
268.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
266.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
265.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
264.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
253.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
252.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
244.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
244.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
232.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
232.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
229.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
227.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
225.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
225.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
222.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
220.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
217.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
215.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
215.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
214.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
214.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
212.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
210.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
210.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
207.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
207.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
203.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
203.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
203.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
201.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
199.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
196.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
194.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
194.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
193.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
192.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
190.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
190.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
188.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
186.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
186.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
180.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
180.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
176.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
172.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
169.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
166.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
165.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
165.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
164.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
163.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
162.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
161.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
161.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
161.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
159.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
158.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
158.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
155.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
154.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
153.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
152.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
151.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
149.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
148.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
147.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
145.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
145.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
145.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
144.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
144.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
143.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
142.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
142.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
142.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
141.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
141.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
140.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
139.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
139.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
139.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
139.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
137.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
136.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
136.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
135.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
135.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
134.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
133.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
132.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
132.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
132.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
132.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
131.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
130.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
130.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
130.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
128.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
128.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
128.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
128.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
127.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
126.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
123.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
122.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
122.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
120.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
120.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
120.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
119.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
119.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
118.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
117.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
117.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
117.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
117.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
115.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
115.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
114.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
114.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
113.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
112.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
112.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
112.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
111.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
111.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
111.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
111.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
111.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
111.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
110.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
110.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
109.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
107.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
107.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
106.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
106.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
105.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
105.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
104.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
103.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
101.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
100.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
100.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
99.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
99.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
98.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
98.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
98.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
96.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
96.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
95.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
95.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
95.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
95.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
94.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
94.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
94.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
94.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
92.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
92.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
91.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
91.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
90.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
90.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
90.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
89.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
87.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
86.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
86.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
86.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
85.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
84.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
83.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
83.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
83.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
83.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
82.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
82.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
82.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
81.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
80.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
79.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
79.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
78.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
78.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
77.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
76.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
75.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
75.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
75.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
73.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
70.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
69.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
67.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
67.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
63.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
63.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
63.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
62.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
60.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
59.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
57.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
56.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
50.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.1
741
Tumor
0.6
571
Tumor
0.6
925
Tumor
0.6
963
Tumor
0.6
695
Tumor
0.6
965
Tumor
0.6
537
Tumor
0.5
1042
Normal
0.5
1027
Tumor
0.5
517
Tumor
0.5
911
Tumor
0.5
477
Tumor
0.5
425
Tumor
0.4
363
Tumor
0.4
727
Tumor
0.4
937
Tumor
0.4
513
Tumor
0.4
231
Tumor
0.4
145
Tumor
0.4
738
Normal
0.4
915
Tumor
0.4
785
Tumor
0.3
463
Tumor
0.3
922
Normal
0.3
526
Normal
0.3
567
Tumor
0.3
285
Tumor
0.3
697
Tumor
0.3
393
Tumor
0.3
483
Tumor
0.3
481
Tumor
0.3
627
Tumor
0.3
1041
Tumor
0.3
981
Tumor
0.3
497
Tumor
0.3
553
Tumor
0.3
286
Normal
0.3
514
Normal
0.3
951
Tumor
0.3
877
Tumor
0.3
957
Tumor
0.3
744
Normal
0.3
525
Tumor
0.2
451
Tumor
0.2
698
Normal
0.2
1025
Tumor
0.2
958
Normal
0.2
721
Tumor
0.2
127
Tumor
0.2
944
Normal
0.2
745
Tumor
0.2
488
Normal
0.2
873
Tumor
0.2
716
Normal
0.2
473
Tumor
0.2
135
Tumor
0.2
257
Tumor
0.2
952
Normal
0.2
1032
Normal
0.2
686
Normal
0.2
975
Tumor
0.2
823
Tumor
0.2
714
Normal
0.2
976
Normal
0.2
955
Tumor
0.2
696
Normal
0.2
953
Tumor
0.2
926
Normal
0.2
224
Normal
0.2
742
Normal
0.2
863
Tumor
0.1
938
Normal
0.1
421
Tumor
0.1
427
Tumor
0.1
1043
Tumor
0.1
1045
Tumor
0.1
1015
Tumor
0.1
411
Tumor
0.1
746
Normal
0.1
923
Tumor
0.1
524
Normal
0.1
466
Normal
0.1
314
Normal
0.1
921
Tumor
0.1
268
Normal
0.1
572
Normal
0.1
685
Tumor
0.1
267
Tumor
0.1
227
Tumor
0.1
756
Normal
0.1
956
Normal
0.1
515
Tumor
0.1
452
Normal
0.1
262
Normal
0.1
494
Normal
0.1
917
Tumor
0.1
728
Normal
0.1
482
Normal
0.1
737
Tumor
0.1
415
Tumor
0.0
786
Normal
0.0
527
Tumor
0.0
723
Tumor
0.0
554
Normal
0.0
444
Normal
0.0
722
Normal
0.0
357
Tumor
0.0
278
Normal
0.0
112
Tumor
0.0
474
Normal
0.0
461
Tumor
0.0
954
Normal
0.0
1031
Tumor
0.0
271
Tumor
0.0
715
Tumor
0.0
533
Tumor
0.0
341
Tumor
0.0
865
Tumor
0.0
416
Normal
0.0
491
Tumor
0.0
1028
Normal
0.0
462
Normal
0.0
484
Normal
0.0
214
Normal
0.0
867
Tumor
0.0
464
Normal
0.0
557
Tumor
0.0
635
Tumor
0.0
472
Normal
0.0
387
Tumor
0.0
221
Tumor
0.0
568
Normal
0.0
327
Tumor
0.0
516
Normal
0.0
331
Tumor
0.0
982
Normal
0.0
123
Tumor
0.0
284
Normal
0.0
558
Normal
0.0
858
Normal
0.0
361
Tumor
0.0
353
Tumor
0.0
147
Tumor
0.0
471
Tumor
0.0
465
Tumor
0.0
137
Tumor
0.0
332
Normal
0.0
195
Tumor
0.0
1014
Normal
0.0
212
Normal
0.0
868
Normal
0.0
924
Normal
0.0
883
Tumor
-0.1
916
Normal
-0.1
665
Tumor
-0.1
113
Tumor
-0.1
258
Normal
-0.1
968
Normal
-0.1
913
Tumor
-0.1
355
Tumor
-0.1
1026
Normal
-0.1
328
Normal
-0.1
487
Tumor
-0.1
641
Tumor
-0.1
713
Tumor
-0.1
518
Normal
-0.1
564
Normal
-0.1
1022
Normal
-0.1
1021
Tumor
-0.1
196
Normal
-0.1
354
Normal
-0.1
857
Tumor
-0.1
615
Tumor
-0.1
261
Tumor
-0.1
966
Normal
-0.1
918
Normal
-0.1
468
Normal
-0.1
498
Normal
-0.1
358
Normal
-0.1
422
Normal
-0.1
1013
Tumor
-0.1
573
Tumor
-0.1
394
Normal
-0.1
131
Tumor
-0.1
493
Tumor
-0.1
356
Normal
-0.1
376
Normal
-0.1
364
Normal
-0.1
213
Tumor
-0.1
222
Normal
-0.1
217
Tumor
-0.1
365
Tumor
-0.1
671
Tumor
-0.1
392
Normal
-0.1
648
Normal
-0.1
368
Normal
-0.1
218
Normal
-0.1
983
Tumor
-0.2
187
Tumor
-0.2
388
Normal
-0.2
277
Tumor
-0.2
283
Tumor
-0.2
978
Normal
-0.2
171
Tumor
-0.2
148
Normal
-0.2
492
Normal
-0.2
777
Tumor
-0.2
366
Normal
-0.2
964
Normal
-0.2
362
Normal
-0.2
815
Tumor
-0.2
161
Tumor
-0.2
1046
Normal
-0.2
818
Normal
-0.2
523
Tumor
-0.2
111
Normal
-0.2
313
Tumor
-0.2
478
Normal
-0.2
545
Tumor
-0.2
423
Tumor
-0.2
342
Normal
-0.2
1044
Normal
-0.2
861
Tumor
-0.2
1016
Normal
-0.2
824
Normal
-0.2
851
Tumor
-0.2
538
Normal
-0.2
914
Normal
-0.2
456
Normal
-0.2
874
Normal
-0.2
664
Normal
-0.2
172
Normal
-0.2
647
Tumor
-0.2
141
Tumor
-0.2
142
Normal
-0.2
445
Tumor
-0.2
852
Normal
-0.2
943
Tumor
-0.2
428
Normal
-0.2
128
Normal
-0.2
563
Tumor
-0.2
435
Tumor
-0.2
136
Normal
-0.3
862
Normal
-0.3
434
Normal
-0.3
534
Normal
-0.3
881
Tumor
-0.3
433
Tumor
-0.3
352
Normal
-0.3
413
Tumor
-0.3
297
Tumor
-0.3
412
Normal
-0.3
864
Normal
-0.3
162
Normal
-0.3
447
Tumor
-0.3
185
Tumor
-0.3
535
Tumor
-0.3
298
Normal
-0.3
866
Normal
-0.3
882
Normal
-0.3
448
Normal
-0.3
396
Normal
-0.3
436
Normal
-0.3
191
Tumor
-0.3
617
Tumor
-0.3
755
Tumor
-0.3
884
Normal
-0.3
662
Normal
-0.3
984
Normal
-0.3
661
Tumor
-0.3
431
Tumor
-0.3
414
Normal
-0.3
977
Tumor
-0.3
816
Normal
-0.3
272
Normal
-0.3
813
Tumor
-0.3
138
Normal
-0.3
778
Normal
-0.3
223
Tumor
-0.3
546
Normal
-0.3
186
Normal
-0.3
912
Normal
-0.3
312
Normal
-0.3
124
Normal
-0.4
443
Tumor
-0.4
386
Normal
-0.4
743
Tumor
-0.4
114
Normal
-0.4
817
Tumor
-0.4
391
Tumor
-0.4
574
Normal
-0.4
618
Normal
-0.4
132
Normal
-0.4
426
Normal
-0.4
642
Normal
-0.4
628
Normal
-0.4
455
Tumor
-0.4
385
Tumor
-0.4
424
Normal
-0.4
344
Normal
-0.4
232
Normal
-0.4
878
Normal
-0.4
188
Normal
-0.5
528
Normal
-0.5
192
Normal
-0.5
672
Normal
-0.5
367
Tumor
-0.5
395
Tumor
-0.5
383
Tumor
-0.5
126
Normal
-0.5
228
Normal
-0.5
446
Normal
-0.5
616
Normal
-0.5
536
Normal
-0.5
663
Tumor
-0.6
814
Normal
-0.6
467
Tumor
-0.6
343
Tumor
-0.6
636
Normal
-0.6
375
Tumor
-0.6
432
Normal
-0.6
211
Tumor
-0.6
125
Tumor
-0.7
146
Normal
-0.7
384
Normal
-0.7
724
Normal
-0.7
351
Tumor
-0.8
311
Tumor
-0.9
666
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.