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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
71.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
54.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.9
Number of samples
231
Samples
Sample
Description
TPM
DO23512
0 years, male, NA, stage:1, alive, 1260 days
169.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
121.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
118.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
103.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
103.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
100.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
98.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
96.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
88.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
87.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
84.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
82.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
76.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
75.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
75.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
73.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
72.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
71.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
70.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
69.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
67.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
66.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
64.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
62.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
61.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
61.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
59.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
59.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
59.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
56.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
56.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
52.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
52.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
49.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
47.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
47.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
46.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
42.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
37.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
1.5
1015
Tumor
1.4
865
Tumor
1.2
975
Tumor
1.0
921
Tumor
0.9
357
Tumor
0.8
213
Tumor
0.8
113
Tumor
0.8
311
Tumor
0.8
861
Tumor
0.7
217
Tumor
0.7
283
Tumor
0.7
883
Tumor
0.7
627
Tumor
0.7
271
Tumor
0.7
641
Tumor
0.6
863
Tumor
0.6
221
Tumor
0.6
814
Normal
0.6
881
Tumor
0.6
977
Tumor
0.6
477
Tumor
0.6
661
Tumor
0.6
553
Tumor
0.5
415
Tumor
0.5
327
Tumor
0.5
451
Tumor
0.5
343
Tumor
0.5
433
Tumor
0.5
112
Tumor
0.5
218
Normal
0.5
434
Normal
0.5
1043
Tumor
0.5
915
Tumor
0.5
494
Normal
0.5
685
Tumor
0.5
386
Normal
0.4
955
Tumor
0.4
262
Normal
0.4
524
Normal
0.4
951
Tumor
0.4
635
Tumor
0.4
211
Tumor
0.4
467
Tumor
0.4
455
Tumor
0.4
268
Normal
0.4
135
Tumor
0.3
628
Normal
0.3
261
Tumor
0.3
557
Tumor
0.3
917
Tumor
0.3
443
Tumor
0.3
1045
Tumor
0.3
715
Tumor
0.3
192
Normal
0.3
527
Tumor
0.3
1042
Normal
0.3
554
Normal
0.3
515
Tumor
0.3
487
Tumor
0.3
141
Tumor
0.3
858
Normal
0.3
857
Tumor
0.3
463
Tumor
0.3
126
Normal
0.3
1028
Normal
0.3
385
Tumor
0.2
721
Tumor
0.2
383
Tumor
0.2
421
Tumor
0.2
724
Normal
0.2
396
Normal
0.2
956
Normal
0.2
431
Tumor
0.2
413
Tumor
0.2
188
Normal
0.2
954
Normal
0.2
966
Normal
0.2
817
Tumor
0.2
536
Normal
0.2
492
Normal
0.2
416
Normal
0.2
1022
Normal
0.2
498
Normal
0.2
815
Tumor
0.2
444
Normal
0.2
446
Normal
0.2
535
Tumor
0.2
1032
Normal
0.2
185
Tumor
0.2
967
Tumor
0.2
916
Normal
0.2
1046
Normal
0.2
666
Normal
0.2
224
Normal
0.2
1026
Normal
0.2
862
Normal
0.2
816
Normal
0.2
964
Normal
0.1
471
Tumor
0.1
344
Normal
0.1
737
Tumor
0.1
445
Tumor
0.1
1044
Normal
0.1
493
Tumor
0.1
384
Normal
0.1
284
Normal
0.1
432
Normal
0.1
813
Tumor
0.1
497
Tumor
0.1
452
Normal
0.1
214
Normal
0.1
365
Tumor
0.1
111
Normal
0.1
615
Tumor
0.1
884
Normal
0.1
146
Normal
0.1
123
Tumor
0.1
124
Normal
0.1
368
Normal
0.1
663
Tumor
0.1
918
Normal
0.1
958
Normal
0.1
425
Tumor
0.1
352
Normal
0.1
874
Normal
0.1
478
Normal
0.1
212
Normal
0.1
662
Normal
0.1
362
Normal
0.0
277
Tumor
0.0
727
Tumor
0.0
963
Tumor
0.0
136
Normal
0.0
468
Normal
0.0
823
Tumor
0.0
392
Normal
0.0
538
Normal
0.0
488
Normal
0.0
1025
Tumor
0.0
272
Normal
0.0
412
Normal
0.0
914
Normal
0.0
456
Normal
0.0
926
Normal
0.0
867
Tumor
0.0
448
Normal
0.0
664
Normal
0.0
516
Normal
0.0
187
Tumor
0.0
525
Tumor
0.0
924
Normal
0.0
686
Normal
0.0
534
Normal
0.0
976
Normal
0.0
142
Normal
0.0
852
Normal
0.0
125
Tumor
0.0
223
Tumor
0.0
364
Normal
0.0
267
Tumor
0.0
877
Tumor
0.0
138
Normal
0.0
558
Normal
0.0
313
Tumor
0.0
228
Normal
0.0
937
Tumor
0.0
922
Normal
0.0
952
Normal
0.0
716
Normal
0.0
778
Normal
0.0
957
Tumor
0.0
361
Tumor
0.0
391
Tumor
-0.1
376
Normal
-0.1
195
Tumor
-0.1
464
Normal
-0.1
777
Tumor
-0.1
944
Normal
-0.1
616
Normal
-0.1
518
Normal
-0.1
483
Tumor
-0.1
698
Normal
-0.1
258
Normal
-0.1
864
Normal
-0.1
722
Normal
-0.1
968
Normal
-0.1
851
Tumor
-0.1
982
Normal
-0.1
572
Normal
-0.1
978
Normal
-0.1
366
Normal
-0.1
696
Normal
-0.1
137
Tumor
-0.1
232
Normal
-0.1
546
Normal
-0.1
286
Normal
-0.1
484
Normal
-0.1
642
Normal
-0.1
528
Normal
-0.1
866
Normal
-0.1
672
Normal
-0.1
568
Normal
-0.1
114
Normal
-0.1
714
Normal
-0.1
161
Tumor
-0.1
127
Tumor
-0.1
984
Normal
-0.1
411
Tumor
-0.1
526
Normal
-0.1
873
Tumor
-0.1
723
Tumor
-0.1
423
Tumor
-0.2
741
Tumor
-0.2
564
Normal
-0.2
358
Normal
-0.2
923
Tumor
-0.2
375
Tumor
-0.2
818
Normal
-0.2
574
Normal
-0.2
222
Normal
-0.2
356
Normal
-0.2
388
Normal
-0.2
1014
Normal
-0.2
424
Normal
-0.2
912
Normal
-0.2
436
Normal
-0.2
414
Normal
-0.2
981
Tumor
-0.2
162
Normal
-0.2
278
Normal
-0.2
983
Tumor
-0.2
466
Normal
-0.2
1016
Normal
-0.2
824
Normal
-0.2
786
Normal
-0.2
145
Tumor
-0.2
648
Normal
-0.2
422
Normal
-0.2
231
Tumor
-0.2
533
Tumor
-0.2
128
Normal
-0.2
312
Normal
-0.2
191
Tumor
-0.2
257
Tumor
-0.2
756
Normal
-0.2
395
Tumor
-0.2
172
Normal
-0.2
491
Tumor
-0.2
738
Normal
-0.2
665
Tumor
-0.2
755
Tumor
-0.2
913
Tumor
-0.2
447
Tumor
-0.2
196
Normal
-0.2
461
Tumor
-0.2
636
Normal
-0.2
728
Normal
-0.2
938
Normal
-0.2
878
Normal
-0.2
943
Tumor
-0.2
713
Tumor
-0.3
297
Tumor
-0.3
514
Normal
-0.3
744
Normal
-0.3
882
Normal
-0.3
742
Normal
-0.3
354
Normal
-0.3
746
Normal
-0.3
697
Tumor
-0.3
314
Normal
-0.3
387
Tumor
-0.3
1027
Tumor
-0.3
868
Normal
-0.3
563
Tumor
-0.3
298
Normal
-0.3
953
Tumor
-0.3
474
Normal
-0.3
671
Tumor
-0.3
363
Tumor
-0.3
132
Normal
-0.3
428
Normal
-0.3
472
Normal
-0.3
618
Normal
-0.3
148
Normal
-0.3
545
Tumor
-0.3
227
Tumor
-0.3
523
Tumor
-0.3
328
Normal
-0.4
617
Tumor
-0.4
186
Normal
-0.4
911
Tumor
-0.4
394
Normal
-0.4
785
Tumor
-0.4
573
Tumor
-0.4
171
Tumor
-0.4
332
Normal
-0.4
462
Normal
-0.4
353
Tumor
-0.4
427
Tumor
-0.4
537
Tumor
-0.5
571
Tumor
-0.5
482
Normal
-0.5
147
Tumor
-0.5
355
Tumor
-0.5
426
Normal
-0.5
1021
Tumor
-0.5
513
Tumor
-0.5
965
Tumor
-0.5
367
Tumor
-0.5
695
Tumor
-0.6
925
Tumor
-0.6
647
Tumor
-0.6
481
Tumor
-0.6
285
Tumor
-0.6
131
Tumor
-0.6
465
Tumor
-0.6
393
Tumor
-0.6
435
Tumor
-0.7
745
Tumor
-0.7
1041
Tumor
-0.7
342
Normal
-0.7
331
Tumor
-0.7
341
Tumor
-0.7
567
Tumor
-0.7
473
Tumor
-0.8
1013
Tumor
-0.8
517
Tumor
-0.8
351
Tumor
-1.0
743
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
