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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

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                                          • PVRIG
                                          TISSUE PRIMARY DATA RETINA Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
                                          AND
                                          VALIDATION
                                          Dictionary
                                          Tissue proteome
                                          Eye
                                          Retina
                                          Tissue methods
                                          RETINA - Expression summary
                                          Protein expressioni

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          No data
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:0.7 nTPM
                                          GTEx:0.7 nTPM
                                          FANTOM5:0.4 Scaled Tags Per Million
                                          EYE - SINGLE CELL RNA EXPRESSION
                                          Explore single cell type data
                                          Retinal amacrine cellsRetinal horizontal cellsRetinal ganglion cellsRetinal bipolar cellsRod photoreceptor cellsCone photoreceptor cellsMüller gliaSchwann cellsMelanocytesRetinal pigment epithelial cellsOcular epithelial cellsLacrimal acinar cellsConjunctival goblet cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMast cellsNeutrophilsMonocytesMacrophagesT-cellsB-cellsPlasma cellsNK-cells0246810nCPM

                                          RETINA - GTEx RNA-seqi

                                          RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                          Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

                                          Max subtype nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          0.7
                                          GTEx sample id Sample description nTPM
                                          0.30.61.00.01.90.00.20.40.60.81.01.21.41.61.82.02.2
                                          0.30.61.00.01.90.00.20.40.60.81.01.21.41.61.82.02.2
                                          Retina
                                          Average nTPM: 0.7
                                          Samples: 105

                                          Max nTPM: 2.3
                                          Min nTPM: 0.0
                                          Std nTPM: 0.5
                                          Median nTPM:
                                          317_1 60 years, male 2.3
                                          351_1 91 years, male 2.3
                                          172_1 72 years, female 1.9
                                          295_1 61 years, female 1.9
                                          355_1 70 years, female 1.9
                                          350_1 84 years, female 1.8
                                          347_1 72 years, male 1.7
                                          352_1 62 years, male 1.5
                                          506_1 65 years, male 1.5
                                          218_1 71 years, female 1.4
                                          335_1 73 years, female 1.4
                                          447_1 81 years, male 1.4
                                          99_1 64 years, male 1.3
                                          318_1 68 years, male 1.3
                                          404_1 82 years, female 1.3
                                          517_1 88 years, male 1.3
                                          173_1 67 years, male 1.2
                                          177_1 74 years, male 1.2
                                          406_1 79 years, male 1.2
                                          503_1 68 years, male 1.2
                                          254_1 77 years, female 1.1
                                          266_1 85 years, male 1.1
                                          292_1 71 years, male 1.1
                                          307_1 66 years, female 1.1
                                          354_1 81 years, female 1.1
                                          452_1 88 years, female 1.1
                                          115_1 83 years, male 1.0
                                          243_1 75 years, male 1.0
                                          356_1 87 years, female 1.0
                                          379_1 60 years, male 1.0
                                          384_1 83 years, male 1.0
                                          386_1 76 years, male 1.0
                                          396_1 62 years, male 1.0
                                          480_1 63 years, male 1.0
                                          41_1 94 years, female 0.9
                                          163_1 78 years, male 0.9
                                          229_1 69 years, female 0.9
                                          237_1 82 years, male 0.9
                                          314_1 67 years, male 0.9
                                          349_1 83 years, male 0.9
                                          394_1 75 years, female 0.9
                                          468_1 89 years, male 0.9
                                          526_1 61 years, male 0.9
                                          119_1 70 years, female 0.8
                                          251_1 78 years, male 0.8
                                          286_1 68 years, female 0.8
                                          291_1 76 years, male 0.8
                                          353_1 82 years, female 0.8
                                          9_1 66 years, female 0.7
                                          117_1 61 years, male 0.7
                                          6_1 73 years, female 0.6
                                          35_1 74 years, female 0.6
                                          109_1 81 years, female 0.6
                                          313_1 79 years, female 0.6
                                          348_1 84 years, male 0.6
                                          405_1 91 years, male 0.6
                                          414_1 84 years, female 0.6
                                          2_1 77 years, female 0.5
                                          4_1 88 years, female 0.5
                                          18_1 88 years, male 0.5
                                          81_1 67 years, male 0.5
                                          89_1 63 years, male 0.5
                                          120_1 70 years, female 0.5
                                          145_1 84 years, male 0.5
                                          311_1 78 years, male 0.5
                                          315_1 62 years, female 0.5
                                          319_1 81 years, male 0.5
                                          324_1 76 years, male 0.5
                                          42_1 85 years, male 0.4
                                          137_1 83 years, male 0.4
                                          153_1 70 years, female 0.4
                                          265_1 87 years, male 0.4
                                          316_1 62 years, male 0.4
                                          321_1 62 years, female 0.4
                                          425_1 59 years, female 0.4
                                          491_1 89 years, female 0.4
                                          43_1 64 years, female 0.3
                                          126_1 63 years, male 0.3
                                          139_1 64 years, female 0.3
                                          149_1 88 years, male 0.3
                                          189_1 76 years, male 0.3
                                          320_1 89 years, female 0.3
                                          375_1 74 years, female 0.3
                                          415_1 77 years, female 0.3
                                          466_1 57 years, female 0.3
                                          490_1 67 years, female 0.3
                                          499_1 55 years, female 0.3
                                          32_1 67 years, male 0.2
                                          162_1 79 years, female 0.2
                                          217_1 76 years, male 0.2
                                          288_1 66 years, female 0.2
                                          308_1 70 years, female 0.2
                                          322_1 76 years, male 0.2
                                          376_1 75 years, female 0.2
                                          377_1 82 years, female 0.2
                                          17_1 71 years, male 0.1
                                          142_1 61 years, female 0.1
                                          264_1 73 years, female 0.1
                                          293_1 68 years, female 0.1
                                          413_1 59 years, female 0.1
                                          501_1 88 years, male 0.1
                                          246_1 77 years, male 0.0
                                          389_1 86 years, female 0.0
                                          495_1 57 years, female 0.0
                                          518_1 75 years, female 0.0
                                          Show allShow less

                                          RETINA - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          0.4
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Retina
                                          Scaled Tags Per Million: 0.4
                                          FF:10030-101E3 24-65 years, mixed 0.4

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