BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:0.1 nTPM
HPA Brain:24.5 nTPM
GTEx:0.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:0.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0246810nCPM

CAUDATE - Antibody stainingi
Antibody HPA047497
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 24.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.6
2289 Male, age 61, right hemisphere 14.3
2288 Male, age 75, left hemisphere 12.6
1781 Male, age 74, unknown 12.4
1854 Male, age 80, left hemisphere 11.1
2290 Female, age 72, unknown 8.9
2846 Female, age 79, unknown 8.9
1857 Female, age 85, left hemisphere 8.5
2481 Female, age 94, left hemisphere 8.3
Globus pallidus, externus
nTPM: 24.5
2567 Female, age 72, unknown 45.7
2646 Male, age 61, right hemisphere 31.3
1996 Male, age 80, right hemisphere 17.3
2772 Female, age 79, unknown 15.8
2395 Male, age 75, both hemispheres 12.5
Globus pallidus, internus
nTPM: 23.0
2566 Female, age 72, unknown 38.9
2111 Female, age 85, right hemisphere 34.0
1818 Male, age 74, unknown 24.7
2778 Female, age 91, both hemispheres 21.7
2037 Male, age 80, right hemisphere 19.2
2287 Male, age 75, right hemisphere 12.4
2483 Female, age 94, right hemisphere 10.3
Nucleus accumbens
nTPM: 14.4
2732 Male, age 80, right hemisphere 21.9
2824 Male, age 61, right hemisphere 16.9
1783 Male, age 74, unknown 15.7
2391 Female, age 94, left hemisphere 15.3
2698 Female, age 72, unknown 13.0
2286 Male, age 75, left hemisphere 12.4
1806 Female, age 85, left hemisphere 11.4
1856 Female, age 91, right hemisphere 8.3
Nucleus basalis of Meynert
nTPM: 17.2
2569 Male, age 61, both hemispheres 27.8
2821 Male, age 75, both hemispheres 15.2
2393 Male, age 80, right hemisphere 14.4
2484 Female, age 94, left hemisphere 11.6
Nucleus of the diagonal band
nTPM: 9.8
2029 Male, age 61, right hemisphere 11.9
2195 Female, age 85, both hemispheres 11.0
1979 Male, age 74, unknown 10.9
2775 Male, age 80, right hemisphere 8.3
1812 Female, age 91, both hemispheres 6.9
Putamen
nTPM: 15.3
2489 Female, age 72, unknown 22.9
2647 Male, age 75, left hemisphere 20.6
1829 Male, age 74, unknown 15.9
2466 Female, age 79, unknown 12.8
2482 Female, age 94, left hemisphere 12.7
1937 Female, age 91, right hemisphere 11.8
1838 Male, age 80, right hemisphere 10.3
Septal nuclei
nTPM: 11.6
2394 Male, age 61, left hemisphere 18.8
2199 Male, age 80, right hemisphere 14.5
2059 Female, age 85, both hemispheres 13.2
2629 Female, age 94, right hemisphere 10.4
2009 Female, age 91, both hemispheres 9.6
1960 Male, age 74, unknown 7.7
2031 Female, age 72, unknown 7.3
Stria terminalis, bed nucleus
nTPM: 12.9
2201 Male, age 74, unknown 16.0
2486 Female, age 94, both hemispheres 11.5
1974 Female, age 91, both hemispheres 11.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 0.1
GTEx sample id Sample description nTPM
0.00.00.20.00.50.00.20.40.60.81.01.21.41.6
Brain - Caudate (basal ganglia)
Average nTPM: 0.1
Samples: 300

Max nTPM: 1.6
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 0.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 0.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 0.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 0.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 0.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 0.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 0.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 0.4
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0.00.00.10.00.20.00.10.20.30.40.50.60.70.80.9
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 285

Max nTPM: 0.9
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 0.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 0.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 0.5
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 0.4
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 0.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 0.4
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 0.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 0.4
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 0.4
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 0.4
GTEX-11GS4-0011-R6a-SM-GINAG 60-69 years, male 0.3
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0.00.00.10.00.20.00.20.40.60.81.01.21.4
Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 254

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 0.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 0.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 0.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 0.5
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 0.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 0.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 0.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 0.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 0.2
Pig sample Sample description nTPM
0.00.00.10.00.00.000.020.040.060.080.100.120.140.160.180.200.220.240.260.280.30
 		Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.3
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
0.20.20.20.20.30.000.020.040.060.080.100.120.140.160.180.200.220.240.260.280.30
 		Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.2
0.10.10.10.10.10.000.020.040.060.080.100.120.140.160.180.20
 		Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
0.10.10.10.10.10.000.020.040.060.080.100.120.140.160.180.200.220.240.260.280.30
 		Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.3
Sample D Female 0.1
0.00.10.10.00.10.000.010.020.030.040.050.060.070.080.090.10
 		Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0
0.10.10.10.10.10.000.020.040.060.080.100.120.140.160.180.20
 		Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.2

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