MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.4 nTPM
HPA Brain:103.7 nTPM
GTEx:35.4 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:342.9 nTPM
Mouse:310.0 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.0
2666 Male, age 74, left hemisphere 95.3
2219 Male, age 76, both hemispheres 84.4
2411 Female, age 72, unknown 77.5
1827 Male, age 72, unknown 76.6
1870 Female, age 42, unknown 57.0
1833 Male, age 53, unknown 54.9
2019 Male, age 18, unknown 51.8
2828 Female, age 72, unknown 50.5
1830 Male, age 51, unknown 49.6
2586 Male, age 75, left hemisphere 42.0
Dorsal raphe nucleus
nTPM: 74.1
2298 Female, age 72, unknown 100.4
2047 Male, age 72, unknown 83.4
2750 Male, age 76, both hemispheres 76.1
1828 Male, age 53, unknown 66.5
2016 Female, age 72, unknown 44.1
Inferior colliculus
nTPM: 60.3
2097 Female, age 72, unknown 74.6
1848 Female, age 42, unknown 60.7
2849 Male, age 72, unknown 55.2
1890 Male, age 53, unknown 50.5
Median raphe nucleus
nTPM: 103.7
2220 Male, age 76, midline 103.7
Periaquaductal grey, anterior
nTPM: 70.6
1947 Male, age 18, unknown 82.6
1795 Male, age 51, unknown 74.9
2502 Female, age 75, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 56.3
1840 Male, age 53, unknown 63.1
2850 Male, age 76, both hemispheres 59.4
2464 Female, age 72, unknown 53.9
1831 Male, age 72, unknown 48.9
Periaquaductal grey, lateral
nTPM: 49.9
2053 Male, age 18, unknown 51.0
2272 Male, age 74, both hemispheres 50.9
2140 Male, age 76, both hemispheres 47.8
Pretectal area
nTPM: 64.1
1944 Female, age 72, unknown 86.7
1816 Male, age 51, unknown 85.1
2224 Female, age 72, unknown 79.5
2007 Male, age 72, unknown 75.6
1817 Female, age 42, unknown 73.4
1815 Male, age 53, unknown 64.0
2667 Female, age 75, unknown 59.0
2825 Male, age 18, unknown 58.5
2316 Male, age 76, right hemisphere 41.7
2273 Male, age 74, both hemispheres 41.1
2407 Male, age 75, both hemispheres 40.9
Red nucleus
nTPM: 38.5
2584 Male, age 75, left hemisphere 53.0
1821 Female, age 72, unknown 46.5
2725 Female, age 75, unknown 42.8
2785 Male, age 18, unknown 42.7
1954 Female, age 42, unknown 41.6
2588 Male, age 74, left hemisphere 36.0
2227 Male, age 72, unknown 35.1
2769 Male, age 72, unknown 34.7
2503 Female, age 72, unknown 34.0
2823 Male, age 76, right hemisphere 32.4
1904 Male, age 53, unknown 31.5
1865 Male, age 51, unknown 31.2
Substantia nigra
nTPM: 82.4
1941 Male, age 53, unknown 121.6
1916 Female, age 42, unknown 118.3
2241 Male, age 72, unknown 112.7
1851 Male, age 51, unknown 86.9
1889 Female, age 72, unknown 82.7
2409 Female, age 72, unknown 75.8
2665 Male, age 74, both hemispheres 66.8
2699 Male, age 18, unknown 60.2
2583 Male, age 75, right hemisphere 50.4
2590 Female, age 75, unknown 48.1
Superior colliculus
nTPM: 58.0
2668 Female, age 75, unknown 105.8
2087 Female, age 72, unknown 73.8
2261 Male, age 18, unknown 65.9
1796 Male, age 53, unknown 65.3
1839 Male, age 51, unknown 57.9
1895 Male, age 76, right hemisphere 57.8
2587 Male, age 74, left hemisphere 42.3
1913 Female, age 42, unknown 41.0
2664 Male, age 75, both hemispheres 39.1
1995 Male, age 72, unknown 31.2
Ventral tegmental area
nTPM: 76.9
2410 Female, age 72, unknown 92.5
2218 Male, age 76, both hemispheres 91.3
1915 Female, age 42, unknown 88.4
1942 Male, age 51, unknown 65.6
2223 Female, age 72, unknown 63.6
2021 Male, age 53, unknown 60.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.4
Samples: 139

Max nTPM: 188.0
Min nTPM: 4.5
Std nTPM: 30.2
Median nTPM: 24.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 188.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 154.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 116.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 103.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 87.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 87.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 82.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 342.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 261.6
Samples: 4

Max nTPM: 419.7
Min nTPM: 87.3
Sample A Female 419.7
Sample B Female 189.7
Sample C Male 349.8
Sample D Male 87.3
Midbrain
nTPM: 289.3
Samples: 4

Max nTPM: 427.1
Min nTPM: 70.0
Sample A Female 70.0
Sample B Female 247.9
Sample C Male 412.3
Sample D Male 427.1
Periaqueductal gray
nTPM: 231.6
Samples: 3

Max nTPM: 308.0
Min nTPM: 193.2
Sample B Female 193.6
Sample C Male 308.0
Sample D Male 193.2
Superior colliculi
nTPM: 342.9
Samples: 4

Max nTPM: 440.3
Min nTPM: 169.7
Sample A Female 440.3
Sample B Female 169.7
Sample C Male 413.2
Sample D Male 348.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 310.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 310.0
Samples: 4

Max nTPM: 313.7
Min nTPM: 304.4
Sample A Male 304.4
Sample B Male 313.7
Sample C Female 312.7
Sample D Female 309.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
77454654 Antisense, RP_070129_01_B11, Mouse strain C57BL/6J (56 days, male) 16.0
89 Antisense, RP_040324_01_E06, Mouse strain C57BL/6J (56 days, male) 8.4
90 Antisense, RP_040324_01_E06, Mouse strain C57BL/6J (56 days, male) 2.3

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