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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRIP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
269.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
222.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
187.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
162.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
160.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
157.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
138.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
111.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
109.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
107.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
100.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
95.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
85.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
84.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
75.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
72.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
71.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
69.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
68.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
66.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
60.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
54.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
54.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
53.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
51.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
48.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
44.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
40.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
38.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRIP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.7
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1012.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
608.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
526.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
455.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
382.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
295.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
279.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
277.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
232.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
199.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
178.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
156.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
153.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
149.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
148.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
141.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
134.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
128.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
113.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
108.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
108.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
107.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
99.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
94.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
90.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
83.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
79.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
78.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
74.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
70.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
70.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
66.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
64.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
63.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
61.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
57.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
56.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
56.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
55.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
53.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
51.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
41.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.5
695
Tumor
2.4
823
Tumor
2.1
357
Tumor
1.9
311
Tumor
1.8
492
Normal
1.5
471
Tumor
1.4
563
Tumor
1.4
916
Normal
1.4
493
Tumor
1.3
975
Tumor
1.2
455
Tumor
1.2
1031
Tumor
1.2
192
Normal
1.1
524
Normal
1.1
536
Normal
1.1
355
Tumor
1.0
141
Tumor
1.0
817
Tumor
1.0
483
Tumor
1.0
1015
Tumor
1.0
883
Tumor
1.0
223
Tumor
1.0
963
Tumor
0.9
881
Tumor
0.9
461
Tumor
0.9
535
Tumor
0.9
861
Tumor
0.9
697
Tumor
0.8
641
Tumor
0.8
943
Tumor
0.8
297
Tumor
0.8
857
Tumor
0.8
444
Normal
0.8
917
Tumor
0.7
421
Tumor
0.7
213
Tumor
0.7
491
Tumor
0.7
553
Tumor
0.6
814
Normal
0.6
913
Tumor
0.6
785
Tumor
0.6
447
Tumor
0.6
465
Tumor
0.6
283
Tumor
0.6
721
Tumor
0.5
386
Normal
0.5
958
Normal
0.5
925
Tumor
0.5
921
Tumor
0.5
982
Normal
0.5
672
Normal
0.5
545
Tumor
0.5
816
Normal
0.5
365
Tumor
0.5
661
Tumor
0.5
952
Normal
0.5
188
Normal
0.5
434
Normal
0.4
385
Tumor
0.4
715
Tumor
0.4
628
Normal
0.4
516
Normal
0.4
384
Normal
0.4
966
Normal
0.4
1043
Tumor
0.4
951
Tumor
0.3
146
Normal
0.3
137
Tumor
0.3
363
Tumor
0.3
744
Normal
0.3
874
Normal
0.3
572
Normal
0.3
195
Tumor
0.3
813
Tumor
0.3
852
Normal
0.3
574
Normal
0.3
713
Tumor
0.3
1045
Tumor
0.3
968
Normal
0.3
478
Normal
0.3
525
Tumor
0.3
415
Tumor
0.3
627
Tumor
0.3
923
Tumor
0.3
498
Normal
0.3
716
Normal
0.3
383
Tumor
0.2
866
Normal
0.2
187
Tumor
0.2
327
Tumor
0.2
362
Normal
0.2
924
Normal
0.2
617
Tumor
0.2
514
Normal
0.2
268
Normal
0.1
191
Tumor
0.1
878
Normal
0.1
375
Tumor
0.1
145
Tumor
0.1
354
Normal
0.1
433
Tumor
0.1
1044
Normal
0.1
261
Tumor
0.1
724
Normal
0.1
743
Tumor
0.1
126
Normal
0.1
185
Tumor
0.1
956
Normal
0.1
867
Tumor
0.1
538
Normal
0.1
467
Tumor
0.0
312
Normal
0.0
862
Normal
0.0
135
Tumor
0.0
742
Normal
0.0
686
Normal
0.0
224
Normal
0.0
366
Normal
0.0
882
Normal
0.0
142
Normal
0.0
984
Normal
0.0
954
Normal
0.0
671
Tumor
0.0
1028
Normal
0.0
737
Tumor
0.0
664
Normal
0.0
662
Normal
0.0
364
Normal
-0.1
714
Normal
-0.1
396
Normal
-0.1
727
Tumor
-0.1
472
Normal
-0.1
1032
Normal
-0.1
976
Normal
-0.1
918
Normal
-0.1
558
Normal
-0.1
474
Normal
-0.1
161
Tumor
-0.1
922
Normal
-0.1
284
Normal
-0.1
642
Normal
-0.1
937
Tumor
-0.1
138
Normal
-0.1
392
Normal
-0.2
884
Normal
-0.2
497
Tumor
-0.2
864
Normal
-0.2
466
Normal
-0.2
416
Normal
-0.2
738
Normal
-0.2
978
Normal
-0.2
427
Tumor
-0.2
298
Normal
-0.2
1013
Tumor
-0.2
914
Normal
-0.2
262
Normal
-0.2
278
Normal
-0.2
938
Normal
-0.2
983
Tumor
-0.2
368
Normal
-0.2
926
Normal
-0.2
217
Tumor
-0.2
573
Tumor
-0.2
468
Normal
-0.3
863
Tumor
-0.3
456
Normal
-0.3
877
Tumor
-0.3
446
Normal
-0.3
1022
Normal
-0.3
741
Tumor
-0.3
1025
Tumor
-0.3
554
Normal
-0.3
696
Normal
-0.3
114
Normal
-0.3
755
Tumor
-0.3
214
Normal
-0.3
341
Tumor
-0.3
272
Normal
-0.3
218
Normal
-0.3
615
Tumor
-0.3
746
Normal
-0.3
448
Normal
-0.3
388
Normal
-0.4
162
Normal
-0.4
786
Normal
-0.4
1016
Normal
-0.4
221
Tumor
-0.4
314
Normal
-0.4
1026
Normal
-0.4
412
Normal
-0.4
1042
Normal
-0.4
136
Normal
-0.4
778
Normal
-0.4
723
Tumor
-0.4
777
Tumor
-0.4
148
Normal
-0.4
546
Normal
-0.4
636
Normal
-0.4
728
Normal
-0.4
124
Normal
-0.4
111
Normal
-0.4
647
Tumor
-0.4
977
Tumor
-0.4
463
Tumor
-0.4
428
Normal
-0.4
212
Normal
-0.4
818
Normal
-0.4
172
Normal
-0.4
361
Tumor
-0.5
394
Normal
-0.5
868
Normal
-0.5
413
Tumor
-0.5
518
Normal
-0.5
424
Normal
-0.5
944
Normal
-0.5
967
Tumor
-0.5
387
Tumor
-0.5
228
Normal
-0.5
915
Tumor
-0.5
858
Normal
-0.5
464
Normal
-0.5
452
Normal
-0.5
277
Tumor
-0.5
1021
Tumor
-0.5
353
Tumor
-0.6
722
Normal
-0.6
328
Normal
-0.6
517
Tumor
-0.6
911
Tumor
-0.6
824
Normal
-0.6
685
Tumor
-0.6
955
Tumor
-0.6
557
Tumor
-0.6
332
Normal
-0.6
425
Tumor
-0.6
473
Tumor
-0.6
666
Normal
-0.6
395
Tumor
-0.6
515
Tumor
-0.6
186
Normal
-0.6
343
Tumor
-0.6
484
Normal
-0.6
113
Tumor
-0.6
132
Normal
-0.6
526
Normal
-0.6
618
Normal
-0.6
865
Tumor
-0.7
232
Normal
-0.7
376
Normal
-0.7
851
Tumor
-0.7
616
Normal
-0.7
815
Tumor
-0.7
494
Normal
-0.7
912
Normal
-0.7
271
Tumor
-0.7
981
Tumor
-0.7
426
Normal
-0.7
756
Normal
-0.7
564
Normal
-0.7
451
Tumor
-0.7
196
Normal
-0.7
1014
Normal
-0.7
481
Tumor
-0.7
957
Tumor
-0.7
698
Normal
-0.7
423
Tumor
-0.7
528
Normal
-0.7
568
Normal
-0.8
352
Normal
-0.8
527
Tumor
-0.8
534
Normal
-0.8
462
Normal
-0.8
488
Normal
-0.8
422
Normal
-0.8
513
Tumor
-0.8
663
Tumor
-0.8
432
Normal
-0.8
411
Tumor
-0.8
344
Normal
-0.8
965
Tumor
-0.9
258
Normal
-0.9
477
Tumor
-0.9
431
Tumor
-0.9
964
Normal
-0.9
391
Tumor
-0.9
285
Tumor
-0.9
482
Normal
-0.9
267
Tumor
-0.9
231
Tumor
-0.9
222
Normal
-0.9
127
Tumor
-0.9
487
Tumor
-0.9
1046
Normal
-0.9
436
Normal
-1.0
533
Tumor
-1.0
571
Tumor
-1.0
745
Tumor
-1.0
1041
Tumor
-1.0
331
Tumor
-1.0
648
Normal
-1.0
128
Normal
-1.0
358
Normal
-1.0
286
Normal
-1.0
873
Tumor
-1.1
537
Tumor
-1.1
665
Tumor
-1.1
414
Normal
-1.1
342
Normal
-1.1
125
Tumor
-1.1
131
Tumor
-1.2
367
Tumor
-1.2
112
Tumor
-1.2
313
Tumor
-1.2
227
Tumor
-1.2
523
Tumor
-1.2
953
Tumor
-1.3
443
Tumor
-1.3
393
Tumor
-1.3
257
Tumor
-1.3
356
Normal
-1.3
147
Tumor
-1.4
123
Tumor
-1.5
445
Tumor
-1.5
351
Tumor
-1.5
171
Tumor
-1.6
635
Tumor
-1.6
435
Tumor
-1.6
567
Tumor
-1.9
1027
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
