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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.6
nTPM
HPA Brain:
79.2
nTPM
GTEx:
46.6
nTPM
FANTOM5:
83.0
Scaled Tags Per Million
Pig:
50.6
nTPM
Mouse:
8.4
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA054058
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 79.2
2621
Female, age 67, right hemisphere
89.8
1911
Female, age 85, right hemisphere
80.8
2529
Female, age 94, left hemisphere
78.9
2148
Female, age 91, left hemisphere
78.6
1855
Male, age 76, left hemisphere
75.7
1898
Male, age 80, left hemisphere
71.4
Dentate gyrus nTPM: 75.4
2531
Female, age 67, both hemispheres
91.8
2530
Female, age 94, left hemisphere
78.4
1927
Female, age 91, both hemispheres
74.7
2246
Female, age 85, both hemispheres
73.5
2010
Male, age 76, both hemispheres
69.4
2528
Male, age 74, both hemispheres
64.6
Entorhinal gyrus nTPM: 79.2
2686
Male, age 75, right hemisphere
100.1
2613
Female, age 94, left hemisphere
83.4
2764
Male, age 80, right hemisphere
81.8
1787
Male, age 76, left hemisphere
79.0
2117
Female, age 91, right hemisphere
69.0
1938
Female, age 85, left hemisphere
61.7
Hippocampus, CA1 nTPM: 67.9
2045
Male, age 76, both hemispheres
78.7
2749
Male, age 80, left hemisphere
76.8
1873
Female, age 85, both hemispheres
76.0
2527
Male, age 74, both hemispheres
63.9
2082
Female, age 91, right hemisphere
44.4
Hippocampus, CA2 nTPM: 64.7
1963
Male, age 80, left hemisphere
72.5
1892
Male, age 76, both hemispheres
72.3
2437
Female, age 94, left hemisphere
65.6
2113
Female, age 91, right hemisphere
61.4
1940
Female, age 85, left hemisphere
58.6
2249
Male, age 74, both hemispheres
58.0
Hippocampus, CA3 nTPM: 77.2
2861
Female, age 67, both hemispheres
108.5
2620
Female, age 94, left hemisphere
97.1
2137
Male, age 80, left hemisphere
75.1
1867
Male, age 76, both hemispheres
67.0
1891
Female, age 85, both hemispheres
61.4
2436
Male, age 74, both hemispheres
54.2
Parahippocampal cortex nTPM: 70.8
2622
Female, age 67, right hemisphere
94.2
2245
Female, age 91, both hemispheres
83.9
2693
Female, age 94, both hemispheres
75.2
2692
Male, age 74, both hemispheres
72.5
2532
Female, age 72, left hemisphere
71.6
1933
Female, age 85, both hemispheres
70.9
2250
Female, age 67, right hemisphere
62.8
1990
Female, age 91, right hemisphere
61.2
2018
Male, age 76, both hemispheres
59.7
1850
Male, age 80, both hemispheres
56.0
Perirhinal gyrus nTPM: 63.8
2848
Male, age 76, right hemisphere
76.2
1794
Male, age 80, right hemisphere
71.2
2521
Female, age 94, right hemisphere
61.3
1847
Female, age 91, left hemisphere
56.9
1841
Female, age 85, right hemisphere
53.4
Subiculum nTPM: 67.5
1901
Male, age 80, both hemispheres
75.5
2042
Male, age 76, both hemispheres
74.3
2619
Male, age 74, both hemispheres
71.2
2729
Female, age 91, right hemisphere
70.6
1977
Female, age 85, both hemispheres
58.7
2438
Female, age 94, left hemisphere
54.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 46.6
Samples: 197
Max nTPM: 93.5
Min nTPM: 12.0
Std nTPM: 14.5
Median nTPM: 44.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
93.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
83.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
81.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
80.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
79.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
79.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
76.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
76.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
76.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
73.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
73.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
73.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
71.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
69.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
69.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
68.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
67.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
66.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
66.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
66.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
66.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
65.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
64.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
64.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
64.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
63.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
63.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
63.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
63.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
63.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
62.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
62.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
62.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
61.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
61.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
59.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
59.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
59.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
59.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
59.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
59.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
57.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
57.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
57.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
56.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
56.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
56.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
55.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
55.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
54.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
54.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
54.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
54.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
54.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
54.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
53.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
53.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
53.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
53.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
53.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
52.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
52.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
52.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
52.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
52.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
52.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
51.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
51.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
50.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
50.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
50.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
50.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
49.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
49.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
49.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
49.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
48.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
48.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
48.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
48.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
48.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
48.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
48.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
47.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
47.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
47.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
47.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
47.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
47.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
47.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
46.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
46.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
45.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
45.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
45.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
45.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
44.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
44.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
44.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
44.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
44.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
44.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
44.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
44.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
44.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
43.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
43.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
42.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
42.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
42.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
42.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
42.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
42.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
42.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
41.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
41.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
40.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
40.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
40.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
40.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
40.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
39.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
39.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
39.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
39.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
39.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
39.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
39.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
39.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
39.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
39.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
38.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
38.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
38.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
38.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
37.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
37.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
37.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
37.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
37.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
37.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
36.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
36.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
36.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
36.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
36.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
35.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
35.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
35.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
35.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
35.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
34.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
34.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
34.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
34.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
34.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
34.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
33.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
33.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
33.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
33.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
33.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
32.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
32.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
32.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
32.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
32.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
32.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
32.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
31.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
31.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
31.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
30.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
29.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
29.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
29.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
29.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
28.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
28.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
28.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
28.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
27.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
27.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
26.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
25.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
24.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
24.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
23.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
23.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
21.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
21.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
18.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
15.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
12.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 8.4
Samples: 4
Max nTPM: 9.0
Min nTPM: 7.0
Sample A
Male
7.0
Sample B
Male
8.9
Sample C
Female
9.0
Sample D
Female
8.7
Hippocampal formation nTPM: 8.4
Samples: 4
Max nTPM: 9.4
Min nTPM: 7.3
Sample A
Male
7.3
Sample B
Male
8.3
Sample C
Female
8.6
Sample D
Female
9.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.