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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.9
nTPM
HPA Brain:
80.4
nTPM
GTEx:
34.9
nTPM
FANTOM5:
78.0
Scaled Tags Per Million
Pig:
36.8
nTPM
Mouse:
4.4
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 70.2
2586
Male, age 75, left hemisphere
110.8
2828
Female, age 72, unknown
78.4
2666
Male, age 74, left hemisphere
77.8
2219
Male, age 76, both hemispheres
75.0
1833
Male, age 53, unknown
66.0
1870
Female, age 42, unknown
65.7
1827
Male, age 72, unknown
64.9
1830
Male, age 51, unknown
63.8
2411
Female, age 72, unknown
54.9
2019
Male, age 18, unknown
44.6
Dorsal raphe nucleus nTPM: 63.3
2047
Male, age 72, unknown
72.2
1828
Male, age 53, unknown
63.9
2750
Male, age 76, both hemispheres
61.8
2016
Female, age 72, unknown
60.5
2298
Female, age 72, unknown
58.0
Inferior colliculus nTPM: 66.5
2849
Male, age 72, unknown
88.3
1890
Male, age 53, unknown
63.0
1848
Female, age 42, unknown
60.7
2097
Female, age 72, unknown
53.9
Median raphe nucleus nTPM: 71.8
2220
Male, age 76, midline
71.8
Periaquaductal grey, anterior nTPM: 80.4
1795
Male, age 51, unknown
84.7
1947
Male, age 18, unknown
83.3
2502
Female, age 75, unknown
73.2
Periaquaductal grey, dorsal nTPM: 69.3
2850
Male, age 76, both hemispheres
77.1
1831
Male, age 72, unknown
68.8
1840
Male, age 53, unknown
66.9
2464
Female, age 72, unknown
64.3
Periaquaductal grey, lateral nTPM: 63.9
2053
Male, age 18, unknown
68.1
2272
Male, age 74, both hemispheres
62.0
2140
Male, age 76, both hemispheres
61.6
Pretectal area nTPM: 61.0
2825
Male, age 18, unknown
82.4
2224
Female, age 72, unknown
72.2
2407
Male, age 75, both hemispheres
70.0
2667
Female, age 75, unknown
67.7
2316
Male, age 76, right hemisphere
60.8
2273
Male, age 74, both hemispheres
56.9
1815
Male, age 53, unknown
54.4
1817
Female, age 42, unknown
54.4
1816
Male, age 51, unknown
54.0
2007
Male, age 72, unknown
50.7
1944
Female, age 72, unknown
47.8
Red nucleus nTPM: 64.5
2584
Male, age 75, left hemisphere
89.0
2588
Male, age 74, left hemisphere
74.1
2769
Male, age 72, unknown
73.5
2227
Male, age 72, unknown
68.4
2503
Female, age 72, unknown
62.7
1904
Male, age 53, unknown
62.0
2725
Female, age 75, unknown
61.6
2823
Male, age 76, right hemisphere
61.1
1954
Female, age 42, unknown
59.6
1865
Male, age 51, unknown
58.1
2785
Male, age 18, unknown
54.5
1821
Female, age 72, unknown
49.0
Substantia nigra nTPM: 63.2
2583
Male, age 75, right hemisphere
81.0
2665
Male, age 74, both hemispheres
80.9
2699
Male, age 18, unknown
79.9
1916
Female, age 42, unknown
68.3
1941
Male, age 53, unknown
67.0
1851
Male, age 51, unknown
60.6
2590
Female, age 75, unknown
56.2
1889
Female, age 72, unknown
52.7
2241
Male, age 72, unknown
44.3
2409
Female, age 72, unknown
41.1
Superior colliculus nTPM: 65.8
2664
Male, age 75, both hemispheres
108.2
1839
Male, age 51, unknown
72.4
2668
Female, age 75, unknown
70.9
1796
Male, age 53, unknown
66.5
1913
Female, age 42, unknown
63.6
2587
Male, age 74, left hemisphere
63.6
1995
Male, age 72, unknown
58.5
2261
Male, age 18, unknown
58.4
1895
Male, age 76, right hemisphere
49.1
2087
Female, age 72, unknown
46.9
Ventral tegmental area nTPM: 66.9
1942
Male, age 51, unknown
74.0
2218
Male, age 76, both hemispheres
73.9
2021
Male, age 53, unknown
73.2
2223
Female, age 72, unknown
69.7
1915
Female, age 42, unknown
62.6
2410
Female, age 72, unknown
47.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 34.9
Samples: 139
Max nTPM: 62.2
Min nTPM: 13.2
Std nTPM: 8.3
Median nTPM: 33.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
62.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
59.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
55.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
51.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
51.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
51.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
49.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
48.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
48.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
48.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
48.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
45.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
45.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
45.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
44.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
44.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
44.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
44.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
43.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
43.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
43.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
42.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
42.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
41.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
41.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
41.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
41.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
41.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
41.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
41.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
40.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
40.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
40.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
40.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
40.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
40.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
40.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
40.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
39.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
39.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
39.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
39.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
39.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
38.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
38.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
38.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
37.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
37.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
37.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
37.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
36.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
36.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
36.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
36.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
36.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
36.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
35.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
35.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
35.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
35.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
35.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
35.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
35.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
34.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
33.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
33.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
33.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
33.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
33.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
33.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
33.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
33.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
32.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
32.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
32.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
32.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
32.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
32.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
32.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
32.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
32.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
31.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
31.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
31.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
31.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
30.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
30.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
30.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
30.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
30.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
30.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
30.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
29.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
29.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
29.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
29.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
29.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
28.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
28.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
28.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
27.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
27.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
27.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
27.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
27.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
26.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
26.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
26.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
26.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
25.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
25.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
25.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
25.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
25.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
24.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
23.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
21.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
20.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
17.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 4.4
Samples: 4
Max nTPM: 4.7
Min nTPM: 3.9
Sample A
Male
4.7
Sample B
Male
3.9
Sample C
Female
4.7
Sample D
Female
4.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.