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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPX3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
520.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5950.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4126.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3469.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3156.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2484.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2402.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2060.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1995.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1987.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1836.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1828.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1770.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1730.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1684.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1659.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1658.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1612.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1572.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1508.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1472.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1467.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1445.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1426.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1396.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1387.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1366.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1338.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1247.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1208.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1207.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1189.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1178.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1149.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1143.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1120.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1104.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1085.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1079.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1059.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
995.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
992.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
976.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
965.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
956.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
942.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
914.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
893.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
884.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
877.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
875.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
872.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
856.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
840.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
839.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
839.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
838.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
829.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
824.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
804.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
788.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
787.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
787.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
775.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
773.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
772.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
766.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
761.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
758.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
756.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
754.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
754.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
751.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
747.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
731.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
723.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
715.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
706.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
681.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
677.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
674.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
669.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
665.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
657.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
656.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
652.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
651.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
648.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
644.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
643.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
642.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
637.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
632.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
631.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
626.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
625.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
624.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
622.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
621.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
620.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
602.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
599.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
594.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
594.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
586.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
581.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
580.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
572.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
572.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
571.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
569.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
564.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
560.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
553.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
550.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
547.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
544.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
542.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
533.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
532.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
531.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
530.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
527.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
525.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
523.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
522.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
515.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
513.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
509.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
506.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
505.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
502.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
501.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
499.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
499.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
497.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
490.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
484.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
484.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
484.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
480.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
477.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
462.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
462.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
462.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
452.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
451.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
444.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
442.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
441.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
439.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
436.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
430.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
427.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
425.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
422.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
422.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
421.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
414.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
411.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
399.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
397.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
396.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
393.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
392.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
390.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
388.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
383.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
383.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
382.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
382.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
379.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
378.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
378.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
376.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
375.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
375.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
368.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
368.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
366.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
364.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
361.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
359.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
358.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
353.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
351.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
348.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
346.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
342.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
337.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
336.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
336.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
335.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
332.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
331.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
325.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
321.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
319.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
319.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
310.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
307.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
305.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
304.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
304.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
302.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
300.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
300.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
299.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
299.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
296.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
289.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
288.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
288.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
287.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
286.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
286.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
284.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
284.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
281.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
275.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
274.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
272.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
272.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
272.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
270.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
269.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
267.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
266.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
264.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
264.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
264.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
261.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
261.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
259.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
259.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
258.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
256.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
256.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
256.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
255.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
254.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
249.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
248.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
247.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
245.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
242.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
241.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
241.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
240.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
236.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
235.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
233.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
227.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
226.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
224.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
224.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
223.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
222.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
220.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
220.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
218.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
217.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
214.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
214.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
210.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
210.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
208.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
204.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
204.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
201.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
198.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
198.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
196.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
192.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
188.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
186.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
186.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
185.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
185.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
185.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
184.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
180.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
179.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
179.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
178.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
176.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
175.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
174.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
172.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
172.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
171.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
165.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
164.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
164.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
160.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
160.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
159.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
154.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
153.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
152.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
150.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
141.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
137.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
137.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
136.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
136.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
135.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
133.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
131.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
131.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
123.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
122.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
119.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
119.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
117.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
115.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
113.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
111.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
109.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
108.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
105.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
100.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
96.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
96.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
94.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
93.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
92.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
92.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
87.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
84.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
83.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
82.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
82.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
82.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
80.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
67.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
53.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
46.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPX3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
481.7
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3485.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2539.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2402.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2291.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2115.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
1855.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
1803.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1793.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
1600.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1546.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1461.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1433.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1422.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1339.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1234.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
1233.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
1185.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
1143.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1136.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1134.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1096.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1042.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
1039.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1034.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
967.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
954.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
897.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
896.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
892.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
875.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
854.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
850.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
839.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
827.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
820.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
803.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
777.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
757.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
742.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
718.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
718.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
715.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
711.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
707.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
706.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
704.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
682.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
679.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
665.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
663.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
658.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
656.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
656.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
652.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
648.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
645.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
642.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
641.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
619.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
619.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
614.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
611.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
607.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
588.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
583.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
566.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
564.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
556.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
555.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
545.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
544.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
541.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
539.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
525.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
523.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
516.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
509.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
508.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
502.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
501.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
500.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
498.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
492.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
486.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
485.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
478.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
471.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
464.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
459.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
455.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
452.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
447.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
445.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
445.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
439.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
436.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
436.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
435.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
434.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
433.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
431.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
425.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
415.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
413.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
407.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
406.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
405.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
401.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
396.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
394.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
387.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
386.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
382.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
379.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
366.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
363.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
359.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
358.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
356.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
353.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
346.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
345.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
345.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
344.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
333.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
327.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
326.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
323.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
317.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
316.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
311.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
311.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
299.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
297.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
296.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
294.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
294.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
277.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
265.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
263.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
263.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
260.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
259.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
257.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
257.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
256.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
254.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
253.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
252.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
250.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
245.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
241.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
221.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
213.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
207.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
201.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
200.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
198.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
196.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
191.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
186.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
185.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
185.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
184.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
182.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
177.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
174.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
172.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
172.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
168.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
167.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
167.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
164.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
164.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
163.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
163.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
162.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
152.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
149.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
149.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
149.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
147.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
141.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
138.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
135.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
128.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
125.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
124.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
124.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
124.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
122.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
114.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
108.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
107.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
103.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
101.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
95.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
95.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
93.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
90.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
89.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
88.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
80.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
76.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
70.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
61.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
61.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
1.7
444
Normal
1.6
223
Tumor
1.3
311
Tumor
1.2
823
Tumor
1.2
455
Tumor
1.2
917
Tumor
1.2
384
Normal
1.1
297
Tumor
1.1
421
Tumor
1.1
192
Normal
1.1
563
Tumor
1.0
536
Normal
1.0
535
Tumor
1.0
478
Normal
1.0
881
Tumor
0.9
1045
Tumor
0.9
498
Normal
0.9
145
Tumor
0.9
146
Normal
0.9
525
Tumor
0.8
185
Tumor
0.8
924
Normal
0.8
141
Tumor
0.7
975
Tumor
0.7
916
Normal
0.7
492
Normal
0.7
224
Normal
0.7
483
Tumor
0.7
925
Tumor
0.7
386
Normal
0.7
524
Normal
0.7
383
Tumor
0.7
213
Tumor
0.6
671
Tumor
0.6
817
Tumor
0.6
958
Normal
0.6
545
Tumor
0.6
538
Normal
0.6
433
Tumor
0.6
191
Tumor
0.6
922
Normal
0.6
874
Normal
0.6
574
Normal
0.6
312
Normal
0.6
354
Normal
0.6
672
Normal
0.6
137
Tumor
0.6
385
Tumor
0.5
375
Tumor
0.5
365
Tumor
0.5
785
Tumor
0.5
126
Normal
0.5
627
Tumor
0.5
641
Tumor
0.5
396
Normal
0.5
461
Tumor
0.5
558
Normal
0.5
857
Tumor
0.5
467
Tumor
0.5
187
Tumor
0.4
883
Tumor
0.4
984
Normal
0.4
228
Normal
0.4
921
Tumor
0.4
268
Normal
0.4
918
Normal
0.4
355
Tumor
0.4
188
Normal
0.4
195
Tumor
0.4
976
Normal
0.4
327
Tumor
0.4
448
Normal
0.4
982
Normal
0.3
284
Normal
0.3
516
Normal
0.3
468
Normal
0.3
395
Tumor
0.3
813
Tumor
0.3
697
Tumor
0.3
816
Normal
0.3
1042
Normal
0.3
553
Tumor
0.3
715
Tumor
0.3
884
Normal
0.3
138
Normal
0.3
392
Normal
0.3
394
Normal
0.3
1044
Normal
0.3
434
Normal
0.3
878
Normal
0.3
278
Normal
0.3
572
Normal
0.2
352
Normal
0.2
212
Normal
0.2
214
Normal
0.2
818
Normal
0.2
744
Normal
0.2
636
Normal
0.2
466
Normal
0.2
364
Normal
0.2
474
Normal
0.2
546
Normal
0.2
218
Normal
0.2
343
Tumor
0.2
914
Normal
0.2
415
Tumor
0.2
493
Tumor
0.2
923
Tumor
0.2
926
Normal
0.2
868
Normal
0.2
471
Tumor
0.2
148
Normal
0.1
978
Normal
0.1
814
Normal
0.1
526
Normal
0.1
432
Normal
0.1
722
Normal
0.1
628
Normal
0.1
344
Normal
0.1
427
Tumor
0.1
491
Tumor
0.1
528
Normal
0.1
314
Normal
0.1
388
Normal
0.1
328
Normal
0.1
515
Tumor
0.1
956
Normal
0.1
446
Normal
0.1
963
Tumor
0.1
698
Normal
0.1
211
Tumor
0.1
642
Normal
0.1
472
Normal
0.1
353
Tumor
0.1
135
Tumor
0.1
221
Tumor
0.1
786
Normal
0.1
162
Normal
0.1
1046
Normal
0.1
954
Normal
0.1
161
Tumor
0.1
721
Tumor
0.1
363
Tumor
0.1
716
Normal
0.0
514
Normal
0.0
412
Normal
0.0
968
Normal
0.0
447
Tumor
0.0
723
Tumor
0.0
852
Normal
0.0
866
Normal
0.0
332
Normal
0.0
196
Normal
0.0
864
Normal
0.0
172
Normal
0.0
142
Normal
0.0
877
Tumor
0.0
494
Normal
0.0
111
Normal
0.0
714
Normal
0.0
686
Normal
0.0
964
Normal
0.0
666
Normal
0.0
462
Normal
0.0
882
Normal
0.0
413
Tumor
0.0
362
Normal
0.0
136
Normal
0.0
416
Normal
0.0
488
Normal
0.0
662
Normal
0.0
738
Normal
0.0
696
Normal
0.0
615
Tumor
0.0
356
Normal
-0.1
618
Normal
-0.1
527
Tumor
-0.1
912
Normal
-0.1
456
Normal
-0.1
713
Tumor
-0.1
124
Normal
-0.1
1032
Normal
-0.1
262
Normal
-0.1
217
Tumor
-0.1
1028
Normal
-0.1
778
Normal
-0.1
342
Normal
-0.1
867
Tumor
-0.1
568
Normal
-0.1
424
Normal
-0.1
484
Normal
-0.1
695
Tumor
-0.2
756
Normal
-0.2
286
Normal
-0.2
387
Tumor
-0.2
422
Normal
-0.2
742
Normal
-0.2
361
Tumor
-0.2
376
Normal
-0.2
298
Normal
-0.2
534
Normal
-0.2
567
Tumor
-0.2
222
Normal
-0.2
824
Normal
-0.2
938
Normal
-0.2
232
Normal
-0.2
132
Normal
-0.2
431
Tumor
-0.2
1014
Normal
-0.2
482
Normal
-0.2
366
Normal
-0.2
1022
Normal
-0.2
858
Normal
-0.2
341
Tumor
-0.2
414
Normal
-0.2
573
Tumor
-0.2
477
Tumor
-0.2
423
Tumor
-0.2
554
Normal
-0.2
664
Normal
-0.3
272
Normal
-0.3
277
Tumor
-0.3
943
Tumor
-0.3
464
Normal
-0.3
944
Normal
-0.3
114
Normal
-0.3
1041
Tumor
-0.3
331
Tumor
-0.3
728
Normal
-0.3
564
Normal
-0.3
1015
Tumor
-0.3
746
Normal
-0.3
436
Normal
-0.3
616
Normal
-0.4
513
Tumor
-0.4
952
Normal
-0.4
367
Tumor
-0.4
863
Tumor
-0.4
777
Tumor
-0.4
391
Tumor
-0.4
368
Normal
-0.4
617
Tumor
-0.4
428
Normal
-0.4
1031
Tumor
-0.5
1026
Normal
-0.5
128
Normal
-0.5
473
Tumor
-0.5
955
Tumor
-0.5
966
Normal
-0.5
862
Normal
-0.5
518
Normal
-0.5
425
Tumor
-0.5
915
Tumor
-0.5
983
Tumor
-0.5
497
Tumor
-0.5
443
Tumor
-0.5
953
Tumor
-0.5
1016
Normal
-0.5
358
Normal
-0.6
127
Tumor
-0.6
452
Normal
-0.6
873
Tumor
-0.6
481
Tumor
-0.6
537
Tumor
-0.6
426
Normal
-0.6
665
Tumor
-0.6
533
Tumor
-0.6
977
Tumor
-0.7
186
Normal
-0.7
261
Tumor
-0.7
227
Tumor
-0.7
267
Tumor
-0.7
258
Normal
-0.7
487
Tumor
-0.8
463
Tumor
-0.8
967
Tumor
-0.8
741
Tumor
-0.8
685
Tumor
-0.8
1025
Tumor
-0.8
1043
Tumor
-0.8
517
Tumor
-0.8
283
Tumor
-0.9
571
Tumor
-0.9
313
Tumor
-0.9
911
Tumor
-0.9
445
Tumor
-0.9
557
Tumor
-0.9
393
Tumor
-0.9
285
Tumor
-0.9
755
Tumor
-1.0
411
Tumor
-1.0
647
Tumor
-1.0
271
Tumor
-1.0
125
Tumor
-1.0
113
Tumor
-1.1
648
Normal
-1.1
981
Tumor
-1.1
727
Tumor
-1.1
861
Tumor
-1.1
147
Tumor
-1.2
231
Tumor
-1.2
1027
Tumor
-1.2
745
Tumor
-1.2
351
Tumor
-1.2
435
Tumor
-1.2
815
Tumor
-1.2
112
Tumor
-1.2
257
Tumor
-1.2
465
Tumor
-1.3
131
Tumor
-1.3
937
Tumor
-1.3
851
Tumor
-1.4
957
Tumor
-1.4
737
Tumor
-1.4
523
Tumor
-1.4
724
Normal
-1.4
1021
Tumor
-1.4
451
Tumor
-1.5
965
Tumor
-1.6
743
Tumor
-1.6
865
Tumor
-1.8
635
Tumor
-1.8
171
Tumor
-1.8
1013
Tumor
-1.8
951
Tumor
-1.9
357
Tumor
-1.9
663
Tumor
-2.0
123
Tumor
-2.1
661
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.