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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CFI is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
187.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
605.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
601.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
582.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
574.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
558.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
541.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
528.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
524.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
520.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
508.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
486.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
475.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
472.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
470.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
449.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
436.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
435.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
422.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
419.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
419.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
413.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
412.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
409.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
402.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
396.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
396.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
396.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
390.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
383.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
381.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
380.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
367.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
364.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
361.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
356.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
355.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
353.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
339.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
339.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
334.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
333.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
332.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
330.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
328.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
328.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
327.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
325.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
324.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
323.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
322.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
320.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
320.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
318.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
316.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
316.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
316.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
314.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
313.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
313.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
311.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
311.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
306.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
305.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
301.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
298.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
298.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
297.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
295.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
295.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
292.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
288.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
287.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
286.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
285.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
285.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
279.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
278.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
277.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
277.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
274.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
273.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
272.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
272.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
269.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
267.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
267.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
266.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
266.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
261.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
261.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
261.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
260.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
259.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
259.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
258.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
257.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
255.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
254.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
251.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
251.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
251.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
250.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
250.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
249.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
248.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
248.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
247.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
247.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
245.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
240.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
240.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
239.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
237.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
235.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
233.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
231.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
230.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
227.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
226.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
225.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
225.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
225.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
225.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
224.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
223.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
222.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
221.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
221.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
221.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
220.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
220.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
219.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
218.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
214.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
210.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
209.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
209.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
209.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
208.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
208.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
203.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
202.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
202.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
202.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
200.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
200.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
198.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
195.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
195.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
194.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
194.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
193.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
193.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
191.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
191.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
188.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
187.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
185.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
184.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
182.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
181.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
181.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
180.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
176.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
176.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
176.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
176.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
175.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
174.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
170.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
170.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
170.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
168.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
166.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
166.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
164.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
164.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
162.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
161.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
160.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
159.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
159.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
158.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
157.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
157.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
156.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
156.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
156.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
154.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
154.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
154.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
152.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
150.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
149.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
148.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
147.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
147.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
147.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
147.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
144.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
143.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
140.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
139.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
139.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
139.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
138.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
138.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
136.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
136.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
136.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
135.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
135.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
134.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
131.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
130.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
129.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
128.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
126.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
126.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
125.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
125.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
124.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
124.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
123.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
123.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
122.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
121.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
121.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
121.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
120.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
120.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
119.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
117.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
117.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
117.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
116.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
115.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
113.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
113.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
113.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
113.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
113.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
112.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
112.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
108.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
108.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
107.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
107.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
106.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
105.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
104.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
104.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
103.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
103.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
102.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
102.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
102.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
100.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
100.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
98.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
98.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
98.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
97.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
96.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
95.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
93.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
92.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
91.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
91.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
89.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
89.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
88.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
87.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
87.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
87.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
87.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
87.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
85.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
84.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
84.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
83.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
80.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
79.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
78.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
77.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
77.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
77.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
76.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
75.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
74.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
73.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
73.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
73.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
70.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
68.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
67.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
67.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
66.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
65.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
65.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
64.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
63.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
63.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
60.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
59.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
59.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
56.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
55.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
53.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
48.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
44.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
43.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
43.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CFI is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
203.5
Number of samples
231
Samples
Sample
Description
TPM
DO45199
0 years, female, NA, stage:2, alive, 1350 days
679.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
661.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
619.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
614.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
608.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
606.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
516.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
510.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
482.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
479.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
473.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
470.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
443.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
439.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
432.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
424.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
421.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
419.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
413.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
411.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
403.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
400.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
398.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
389.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
379.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
377.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
357.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
352.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
347.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
347.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
333.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
332.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
327.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
326.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
323.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
321.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
320.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
319.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
315.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
312.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
312.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
311.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
310.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
302.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
302.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
302.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
297.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
296.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
294.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
291.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
288.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
286.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
282.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
282.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
281.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
277.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
276.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
273.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
266.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
264.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
263.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
262.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
261.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
257.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
256.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
253.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
250.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
250.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
248.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
248.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
247.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
247.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
245.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
244.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
241.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
241.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
240.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
233.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
230.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
226.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
224.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
223.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
221.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
219.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
219.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
218.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
214.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
211.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
211.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
209.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
209.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
208.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
208.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
207.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
206.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
205.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
203.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
203.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
195.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
195.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
194.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
194.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
193.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
193.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
192.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
191.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
188.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
188.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
188.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
183.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
183.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
181.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
178.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
177.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
175.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
174.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
174.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
173.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
172.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
172.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
172.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
171.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
171.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
171.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
170.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
170.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
169.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
168.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
168.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
167.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
167.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
164.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
162.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
162.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
161.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
159.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
158.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
158.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
157.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
154.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
154.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
154.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
154.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
153.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
149.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
147.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
145.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
141.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
138.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
136.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
134.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
133.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
131.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
130.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
130.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
130.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
129.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
129.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
127.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
123.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
123.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
121.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
120.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
119.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
117.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
116.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
116.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
112.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
112.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
111.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
110.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
110.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
110.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
109.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
109.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
109.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
107.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
106.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
102.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
100.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
98.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
97.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
95.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
95.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
94.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
91.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
91.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
90.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
89.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
89.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
86.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
85.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
81.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
80.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
74.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
68.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
66.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
63.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
63.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
62.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
54.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
50.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
50.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
1.5
343
Tumor
1.3
113
Tumor
1.2
557
Tumor
1.2
261
Tumor
1.0
1015
Tumor
0.9
523
Tumor
0.8
395
Tumor
0.7
817
Tumor
0.7
746
Normal
0.6
713
Tumor
0.6
981
Tumor
0.6
285
Tumor
0.6
671
Tumor
0.6
393
Tumor
0.6
192
Normal
0.6
937
Tumor
0.5
755
Tumor
0.5
218
Normal
0.5
491
Tumor
0.5
392
Normal
0.5
1025
Tumor
0.5
375
Tumor
0.5
283
Tumor
0.5
745
Tumor
0.5
451
Tumor
0.5
137
Tumor
0.5
141
Tumor
0.4
697
Tumor
0.4
952
Normal
0.4
396
Normal
0.4
391
Tumor
0.4
474
Normal
0.4
111
Normal
0.4
344
Normal
0.4
861
Tumor
0.4
573
Tumor
0.4
327
Tumor
0.4
554
Normal
0.3
452
Normal
0.3
124
Normal
0.3
785
Tumor
0.3
368
Normal
0.3
223
Tumor
0.3
114
Normal
0.3
778
Normal
0.3
914
Normal
0.3
816
Normal
0.3
461
Tumor
0.3
217
Tumor
0.3
823
Tumor
0.3
538
Normal
0.2
851
Tumor
0.2
965
Tumor
0.2
518
Normal
0.2
145
Tumor
0.2
642
Normal
0.2
545
Tumor
0.2
527
Tumor
0.2
426
Normal
0.2
492
Normal
0.2
142
Normal
0.2
386
Normal
0.2
195
Tumor
0.2
874
Normal
0.2
618
Normal
0.2
136
Normal
0.2
394
Normal
0.2
715
Tumor
0.2
967
Tumor
0.2
487
Tumor
0.2
813
Tumor
0.2
414
Normal
0.1
376
Normal
0.1
466
Normal
0.1
126
Normal
0.1
915
Tumor
0.1
135
Tumor
0.1
456
Normal
0.1
138
Normal
0.1
665
Tumor
0.1
425
Tumor
0.1
464
Normal
0.1
353
Tumor
0.1
535
Tumor
0.1
422
Normal
0.1
777
Tumor
0.1
455
Tumor
0.1
267
Tumor
0.1
131
Tumor
0.1
553
Tumor
0.1
462
Normal
0.1
1026
Normal
0.1
358
Normal
0.1
436
Normal
0.1
286
Normal
0.1
132
Normal
0.1
342
Normal
0.1
1041
Tumor
0.1
574
Normal
0.1
955
Tumor
0.1
384
Normal
0.0
617
Tumor
0.0
857
Tumor
0.0
744
Normal
0.0
664
Normal
0.0
222
Normal
0.0
148
Normal
0.0
161
Tumor
0.0
975
Tumor
0.0
232
Normal
0.0
815
Tumor
0.0
564
Normal
0.0
966
Normal
0.0
728
Normal
0.0
214
Normal
0.0
672
Normal
0.0
567
Tumor
0.0
568
Normal
0.0
361
Tumor
0.0
878
Normal
0.0
128
Normal
0.0
262
Normal
0.0
258
Normal
0.0
351
Tumor
0.0
526
Normal
0.0
558
Normal
0.0
191
Tumor
0.0
146
Normal
0.0
881
Tumor
0.0
388
Normal
0.0
424
Normal
0.0
312
Normal
0.0
648
Normal
0.0
911
Tumor
-0.1
1028
Normal
-0.1
186
Normal
-0.1
446
Normal
-0.1
1045
Tumor
-0.1
421
Tumor
-0.1
228
Normal
-0.1
448
Normal
-0.1
866
Normal
-0.1
741
Tumor
-0.1
525
Tumor
-0.1
537
Tumor
-0.1
428
Normal
-0.1
162
Normal
-0.1
224
Normal
-0.1
662
Normal
-0.1
314
Normal
-0.1
383
Tumor
-0.1
956
Normal
-0.1
365
Tumor
-0.1
352
Normal
-0.1
332
Normal
-0.1
546
Normal
-0.1
727
Tumor
-0.1
187
Tumor
-0.1
367
Tumor
-0.1
868
Normal
-0.1
125
Tumor
-0.1
298
Normal
-0.1
363
Tumor
-0.1
354
Normal
-0.1
696
Normal
-0.1
968
Normal
-0.1
172
Normal
-0.1
112
Tumor
-0.1
863
Tumor
-0.2
924
Normal
-0.2
147
Tumor
-0.2
362
Normal
-0.2
467
Tumor
-0.2
471
Tumor
-0.2
742
Normal
-0.2
918
Normal
-0.2
257
Tumor
-0.2
196
Normal
-0.2
212
Normal
-0.2
311
Tumor
-0.2
412
Normal
-0.2
297
Tumor
-0.2
862
Normal
-0.2
884
Normal
-0.2
468
Normal
-0.2
743
Tumor
-0.2
1044
Normal
-0.2
1016
Normal
-0.2
515
Tumor
-0.2
1022
Normal
-0.2
278
Normal
-0.2
536
Normal
-0.2
698
Normal
-0.2
636
Normal
-0.2
635
Tumor
-0.2
517
Tumor
-0.2
423
Tumor
-0.2
366
Normal
-0.2
472
Normal
-0.2
528
Normal
-0.2
188
Normal
-0.2
963
Tumor
-0.2
268
Normal
-0.2
858
Normal
-0.2
957
Tumor
-0.3
572
Normal
-0.3
434
Normal
-0.3
723
Tumor
-0.3
738
Normal
-0.3
824
Normal
-0.3
818
Normal
-0.3
852
Normal
-0.3
1021
Tumor
-0.3
497
Tumor
-0.3
663
Tumor
-0.3
786
Normal
-0.3
272
Normal
-0.3
737
Tumor
-0.3
953
Tumor
-0.3
123
Tumor
-0.3
982
Normal
-0.3
916
Normal
-0.3
488
Normal
-0.3
983
Tumor
-0.3
313
Tumor
-0.3
867
Tumor
-0.3
951
Tumor
-0.3
913
Tumor
-0.3
922
Normal
-0.3
444
Normal
-0.3
864
Normal
-0.3
1027
Tumor
-0.3
473
Tumor
-0.3
185
Tumor
-0.3
685
Tumor
-0.3
722
Normal
-0.3
686
Normal
-0.3
883
Tumor
-0.3
1046
Normal
-0.3
284
Normal
-0.3
615
Tumor
-0.3
926
Normal
-0.3
756
Normal
-0.3
721
Tumor
-0.3
977
Tumor
-0.3
331
Tumor
-0.4
356
Normal
-0.4
482
Normal
-0.4
387
Tumor
-0.4
427
Tumor
-0.4
432
Normal
-0.4
882
Normal
-0.4
571
Tumor
-0.4
666
Normal
-0.4
724
Normal
-0.4
447
Tumor
-0.4
917
Tumor
-0.4
355
Tumor
-0.4
1043
Tumor
-0.4
514
Normal
-0.4
938
Normal
-0.4
964
Normal
-0.4
563
Tumor
-0.4
481
Tumor
-0.4
516
Normal
-0.4
463
Tumor
-0.4
534
Normal
-0.4
328
Normal
-0.4
498
Normal
-0.4
494
Normal
-0.4
647
Tumor
-0.4
714
Normal
-0.4
695
Tumor
-0.5
533
Tumor
-0.5
976
Normal
-0.5
912
Normal
-0.5
661
Tumor
-0.5
364
Normal
-0.5
477
Tumor
-0.5
716
Normal
-0.5
221
Tumor
-0.5
524
Normal
-0.5
628
Normal
-0.5
227
Tumor
-0.5
921
Tumor
-0.5
814
Normal
-0.5
416
Normal
-0.5
385
Tumor
-0.5
865
Tumor
-0.5
484
Normal
-0.5
944
Normal
-0.5
923
Tumor
-0.5
873
Tumor
-0.5
483
Tumor
-0.5
943
Tumor
-0.5
478
Normal
-0.6
465
Tumor
-0.6
925
Tumor
-0.6
341
Tumor
-0.6
443
Tumor
-0.6
171
Tumor
-0.6
271
Tumor
-0.6
231
Tumor
-0.6
627
Tumor
-0.6
445
Tumor
-0.6
415
Tumor
-0.6
616
Normal
-0.6
127
Tumor
-0.6
984
Normal
-0.6
413
Tumor
-0.6
1042
Normal
-0.6
1014
Normal
-0.6
433
Tumor
-0.6
958
Normal
-0.7
431
Tumor
-0.7
493
Tumor
-0.7
213
Tumor
-0.7
954
Normal
-0.7
277
Tumor
-0.7
513
Tumor
-0.7
1032
Normal
-0.8
978
Normal
-0.8
211
Tumor
-0.8
435
Tumor
-0.8
357
Tumor
-0.9
1013
Tumor
-0.9
641
Tumor
-1.0
411
Tumor
-1.2
1031
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.