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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGR4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
101.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
63.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
41.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGR4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.8
Number of samples
231
Samples
Sample
Description
TPM
DO45203
0 years, female, NA, stage:2, alive, 1170 days
73.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
61.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
57.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
52.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
42.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
40.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.3
227
Tumor
1.1
354
Normal
0.7
462
Normal
0.7
342
Normal
0.7
358
Normal
0.6
328
Normal
0.6
327
Tumor
0.6
426
Normal
0.6
868
Normal
0.6
211
Tumor
0.6
617
Tumor
0.6
385
Tumor
0.6
394
Normal
0.6
223
Tumor
0.5
414
Normal
0.5
641
Tumor
0.5
967
Tumor
0.5
344
Normal
0.5
862
Normal
0.5
388
Normal
0.5
446
Normal
0.5
285
Tumor
0.5
493
Tumor
0.5
435
Tumor
0.4
412
Normal
0.4
713
Tumor
0.4
873
Tumor
0.4
863
Tumor
0.4
815
Tumor
0.4
695
Tumor
0.4
616
Normal
0.4
428
Normal
0.4
865
Tumor
0.4
664
Normal
0.4
818
Normal
0.4
618
Normal
0.4
487
Tumor
0.4
743
Tumor
0.4
672
Normal
0.4
857
Tumor
0.4
445
Tumor
0.4
481
Tumor
0.4
432
Normal
0.3
472
Normal
0.3
424
Normal
0.3
364
Normal
0.3
858
Normal
0.3
864
Normal
0.3
488
Normal
0.3
474
Normal
0.3
756
Normal
0.3
964
Normal
0.3
356
Normal
0.3
436
Normal
0.3
396
Normal
0.3
423
Tumor
0.3
353
Tumor
0.3
332
Normal
0.3
635
Tumor
0.3
277
Tumor
0.3
786
Normal
0.3
391
Tumor
0.3
444
Normal
0.3
742
Normal
0.3
392
Normal
0.3
416
Normal
0.3
484
Normal
0.3
482
Normal
0.3
636
Normal
0.3
824
Normal
0.3
352
Normal
0.3
228
Normal
0.2
648
Normal
0.2
866
Normal
0.2
425
Tumor
0.2
298
Normal
0.2
357
Tumor
0.2
662
Normal
0.2
671
Tumor
0.2
286
Normal
0.2
386
Normal
0.2
494
Normal
0.2
628
Normal
0.2
314
Normal
0.2
297
Tumor
0.1
443
Tumor
0.1
351
Tumor
0.1
642
Normal
0.1
415
Tumor
0.1
813
Tumor
0.1
431
Tumor
0.1
341
Tumor
0.1
666
Normal
0.1
284
Normal
0.1
874
Normal
0.1
738
Normal
0.1
817
Tumor
0.1
647
Tumor
0.1
861
Tumor
0.1
746
Normal
0.0
851
Tumor
0.0
427
Tumor
0.0
422
Normal
0.0
212
Normal
0.0
343
Tumor
0.0
421
Tumor
0.0
478
Normal
0.0
958
Normal
0.0
976
Normal
0.0
483
Tumor
0.0
661
Tumor
0.0
224
Normal
0.0
477
Tumor
-0.1
461
Tumor
-0.1
867
Tumor
-0.1
331
Tumor
-0.1
387
Tumor
-0.1
963
Tumor
-0.1
498
Normal
-0.1
615
Tumor
-0.1
968
Normal
-0.1
411
Tumor
-0.1
393
Tumor
-0.1
434
Normal
-0.1
433
Tumor
-0.1
814
Normal
-0.1
497
Tumor
-0.1
744
Normal
-0.2
363
Tumor
-0.2
395
Tumor
-0.2
663
Tumor
-0.2
665
Tumor
-0.2
778
Normal
-0.2
777
Tumor
-0.2
852
Normal
-0.2
755
Tumor
-0.2
721
Tumor
-0.3
966
Normal
-0.3
975
Tumor
-0.3
785
Tumor
-0.3
627
Tumor
-0.4
473
Tumor
-0.4
728
Normal
-0.4
745
Tumor
-0.4
723
Tumor
-0.4
492
Normal
-0.5
491
Tumor
-0.5
957
Tumor
-0.5
716
Normal
-0.5
312
Normal
-0.5
283
Tumor
-0.5
816
Normal
-0.5
823
Tumor
-0.5
278
Normal
-0.5
722
Normal
-0.5
696
Normal
-0.5
714
Normal
-0.6
471
Tumor
-0.6
737
Tumor
-0.7
355
Tumor
-0.7
686
Normal
-0.7
727
Tumor
-0.7
724
Normal
-0.8
311
Tumor
-0.8
965
Tumor
-0.9
313
Tumor
-0.9
715
Tumor
-1.1
741
Tumor
-1.1
685
Tumor
-1.7
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
271
Tumor
N/A
272
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
448
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.