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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RACK1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
788.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2579.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2386.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2150.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2066.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2045.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2015.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1999.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1955.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1940.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1925.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1765.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1746.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1665.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1662.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1627.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1613.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1611.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1611.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1611.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1598.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1597.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1573.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1544.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1535.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1508.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1504.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1486.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1472.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1463.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1459.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1443.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1436.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1417.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1375.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1339.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1333.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1324.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1303.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1292.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1248.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1231.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1212.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1206.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1204.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1194.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1193.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1190.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1188.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1187.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1181.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1172.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1114.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1094.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1084.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1083.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1083.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1080.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1079.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1076.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1075.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1073.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1071.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1070.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1069.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1067.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1065.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1058.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1057.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1055.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1052.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1044.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1043.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1028.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1022.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1020.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1014.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1011.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1004.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1003.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1002.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1001.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
997.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
997.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
994.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
992.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
982.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
982.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
980.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
978.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
977.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
974.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
970.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
969.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
960.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
960.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
941.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
941.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
931.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
930.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
921.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
905.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
896.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
895.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
890.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
887.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
881.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
879.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
876.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
869.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
868.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
856.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
853.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
841.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
841.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
838.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
837.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
837.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
834.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
833.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
831.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
829.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
828.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
817.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
812.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
811.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
810.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
804.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
803.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
789.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
787.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
784.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
782.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
779.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
775.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
774.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
771.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
770.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
769.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
769.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
763.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
761.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
760.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
758.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
758.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
752.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
750.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
748.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
745.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
745.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
745.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
742.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
739.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
733.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
731.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
730.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
730.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
727.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
724.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
720.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
719.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
717.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
712.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
705.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
704.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
701.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
701.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
700.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
699.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
697.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
696.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
695.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
694.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
694.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
694.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
693.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
688.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
688.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
687.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
685.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
684.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
683.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
683.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
680.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
678.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
677.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
677.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
677.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
675.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
674.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
670.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
669.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
664.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
664.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
660.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
659.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
659.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
659.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
657.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
656.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
653.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
652.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
651.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
648.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
647.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
646.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
646.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
645.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
642.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
641.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
640.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
636.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
636.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
634.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
633.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
632.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
632.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
631.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
630.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
630.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
629.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
629.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
629.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
626.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
623.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
622.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
620.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
619.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
615.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
614.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
611.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
610.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
608.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
608.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
602.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
602.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
601.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
600.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
599.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
599.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
596.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
595.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
590.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
588.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
587.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
586.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
579.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
579.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
579.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
577.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
575.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
574.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
570.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
567.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
567.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
565.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
563.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
563.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
558.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
557.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
555.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
553.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
551.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
548.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
547.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
546.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
540.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
539.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
535.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
535.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
534.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
534.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
530.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
529.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
528.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
526.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
525.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
523.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
523.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
520.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
517.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
516.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
515.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
509.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
508.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
506.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
506.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
504.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
501.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
497.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
495.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
491.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
487.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
485.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
485.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
480.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
475.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
474.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
474.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
472.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
472.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
471.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
470.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
468.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
468.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
465.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
464.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
458.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
458.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
455.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
454.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
450.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
449.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
449.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
449.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
448.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
447.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
439.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
438.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
434.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
433.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
427.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
426.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
421.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
415.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
408.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
406.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
400.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
398.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
398.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
390.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
390.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
387.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
386.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
380.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
376.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
376.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
373.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
362.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
354.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
354.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
351.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
346.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
342.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
341.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
338.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
333.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
333.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
331.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
325.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
322.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
317.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
317.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
313.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
312.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
306.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
300.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
298.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
294.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
292.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
289.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
273.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
0.4
1021
Tumor
0.4
567
Tumor
0.4
285
Tumor
0.4
537
Tumor
0.3
223
Tumor
0.3
815
Tumor
0.3
327
Tumor
0.3
367
Tumor
0.3
743
Tumor
0.3
983
Tumor
0.3
851
Tumor
0.3
1027
Tumor
0.3
965
Tumor
0.3
523
Tumor
0.2
331
Tumor
0.2
727
Tumor
0.2
1025
Tumor
0.2
393
Tumor
0.2
865
Tumor
0.2
937
Tumor
0.2
967
Tumor
0.2
713
Tumor
0.2
395
Tumor
0.2
131
Tumor
0.2
267
Tumor
0.2
385
Tumor
0.1
685
Tumor
0.1
661
Tumor
0.1
745
Tumor
0.1
443
Tumor
0.1
981
Tumor
0.1
227
Tumor
0.1
737
Tumor
0.1
636
Normal
0.1
135
Tumor
0.1
387
Tumor
0.1
877
Tumor
0.1
738
Normal
0.1
517
Tumor
0.1
746
Normal
0.1
411
Tumor
0.1
755
Tumor
0.1
955
Tumor
0.1
715
Tumor
0.1
952
Normal
0.1
515
Tumor
0.1
1016
Normal
0.1
445
Tumor
0.1
1026
Normal
0.1
966
Normal
0.1
1015
Tumor
0.1
777
Tumor
0.1
412
Normal
0.1
953
Tumor
0.1
545
Tumor
0.0
697
Tumor
0.0
778
Normal
0.0
957
Tumor
0.0
113
Tumor
0.0
1043
Tumor
0.0
186
Normal
0.0
823
Tumor
0.0
635
Tumor
0.0
861
Tumor
0.0
363
Tumor
0.0
355
Tumor
0.0
257
Tumor
0.0
728
Normal
0.0
878
Normal
0.0
172
Normal
0.0
497
Tumor
0.0
527
Tumor
0.0
913
Tumor
0.0
124
Normal
0.0
211
Tumor
0.0
724
Normal
0.0
817
Tumor
0.0
452
Normal
0.0
554
Normal
0.0
343
Tumor
0.0
914
Normal
0.0
461
Tumor
0.0
1028
Normal
0.0
923
Tumor
0.0
277
Tumor
0.0
533
Tumor
0.0
968
Normal
0.0
744
Normal
0.0
171
Tumor
0.0
474
Normal
0.0
951
Tumor
0.0
525
Tumor
0.0
813
Tumor
0.0
1031
Tumor
0.0
125
Tumor
0.0
147
Tumor
0.0
271
Tumor
0.0
436
Normal
0.0
471
Tumor
0.0
535
Tumor
0.0
228
Normal
0.0
568
Normal
0.0
816
Normal
0.0
413
Tumor
0.0
448
Normal
0.0
463
Tumor
0.0
742
Normal
0.0
286
Normal
0.0
648
Normal
0.0
137
Tumor
0.0
434
Normal
0.0
342
Normal
0.0
662
Normal
0.0
546
Normal
0.0
313
Tumor
0.0
975
Tumor
0.0
883
Tumor
0.0
698
Normal
0.0
351
Tumor
0.0
375
Tumor
0.0
451
Tumor
0.0
283
Tumor
0.0
518
Normal
0.0
982
Normal
0.0
938
Normal
0.0
114
Normal
0.0
493
Tumor
0.0
721
Tumor
0.0
671
Tumor
0.0
956
Normal
0.0
162
Normal
0.0
921
Tumor
0.0
214
Normal
0.0
212
Normal
-0.1
392
Normal
-0.1
664
Normal
-0.1
447
Tumor
-0.1
368
Normal
-0.1
943
Tumor
-0.1
261
Tumor
-0.1
573
Tumor
-0.1
785
Tumor
-0.1
696
Normal
-0.1
278
Normal
-0.1
222
Normal
-0.1
344
Normal
-0.1
477
Tumor
-0.1
534
Normal
-0.1
112
Tumor
-0.1
314
Normal
-0.1
924
Normal
-0.1
231
Tumor
-0.1
357
Tumor
-0.1
427
Tumor
-0.1
138
Normal
-0.1
218
Normal
-0.1
213
Tumor
-0.1
425
Tumor
-0.1
881
Tumor
-0.1
663
Tumor
-0.1
617
Tumor
-0.1
446
Normal
-0.1
686
Normal
-0.1
867
Tumor
-0.1
695
Tumor
-0.1
487
Tumor
-0.1
132
Normal
-0.1
873
Tumor
-0.1
964
Normal
-0.1
977
Tumor
-0.1
1014
Normal
-0.1
432
Normal
-0.1
917
Tumor
-0.1
665
Tumor
-0.1
925
Tumor
-0.1
462
Normal
-0.1
984
Normal
-0.1
136
Normal
-0.1
356
Normal
-0.1
723
Tumor
-0.1
217
Tumor
-0.1
628
Normal
-0.1
366
Normal
-0.1
976
Normal
-0.1
618
Normal
-0.1
353
Tumor
-0.1
142
Normal
-0.1
388
Normal
-0.1
1022
Normal
-0.1
332
Normal
-0.1
391
Tumor
-0.1
642
Normal
-0.1
128
Normal
-0.1
538
Normal
-0.1
433
Tumor
-0.1
358
Normal
-0.1
185
Tumor
-0.1
386
Normal
-0.1
963
Tumor
-0.1
786
Normal
-0.1
862
Normal
-0.1
111
Normal
-0.1
571
Tumor
-0.1
394
Normal
-0.1
258
Normal
-0.1
814
Normal
-0.1
423
Tumor
-0.1
465
Tumor
-0.1
722
Normal
-0.1
431
Tumor
-0.1
187
Tumor
-0.1
874
Normal
-0.1
284
Normal
-0.1
196
Normal
-0.1
915
Tumor
-0.1
756
Normal
-0.1
161
Tumor
-0.1
148
Normal
-0.1
421
Tumor
-0.1
647
Tumor
-0.1
455
Tumor
-0.1
145
Tumor
-0.1
195
Tumor
-0.1
574
Normal
-0.1
1041
Tumor
-0.1
918
Normal
-0.1
141
Tumor
-0.1
467
Tumor
-0.1
864
Normal
-0.1
312
Normal
-0.1
526
Normal
-0.1
491
Tumor
-0.2
572
Normal
-0.2
396
Normal
-0.2
473
Tumor
-0.2
123
Tumor
-0.2
416
Normal
-0.2
188
Normal
-0.2
616
Normal
-0.2
516
Normal
-0.2
481
Tumor
-0.2
268
Normal
-0.2
272
Normal
-0.2
376
Normal
-0.2
714
Normal
-0.2
911
Tumor
-0.2
492
Normal
-0.2
422
Normal
-0.2
262
Normal
-0.2
472
Normal
-0.2
916
Normal
-0.2
553
Tumor
-0.2
1044
Normal
-0.2
857
Tumor
-0.2
365
Tumor
-0.2
528
Normal
-0.2
435
Tumor
-0.2
1032
Normal
-0.2
536
Normal
-0.2
1013
Tumor
-0.2
298
Normal
-0.2
232
Normal
-0.2
328
Normal
-0.2
944
Normal
-0.2
466
Normal
-0.2
221
Tumor
-0.2
1042
Normal
-0.2
926
Normal
-0.2
958
Normal
-0.2
666
Normal
-0.2
716
Normal
-0.2
978
Normal
-0.2
484
Normal
-0.2
126
Normal
-0.2
615
Tumor
-0.2
464
Normal
-0.2
191
Tumor
-0.2
564
Normal
-0.2
741
Tumor
-0.2
1046
Normal
-0.2
426
Normal
-0.2
362
Normal
-0.2
866
Normal
-0.2
494
Normal
-0.2
482
Normal
-0.2
361
Tumor
-0.2
224
Normal
-0.2
524
Normal
-0.2
483
Tumor
-0.2
922
Normal
-0.2
852
Normal
-0.2
513
Tumor
-0.2
868
Normal
-0.2
341
Tumor
-0.2
882
Normal
-0.2
297
Tumor
-0.2
488
Normal
-0.3
858
Normal
-0.3
424
Normal
-0.3
146
Normal
-0.3
311
Tumor
-0.3
352
Normal
-0.3
414
Normal
-0.3
428
Normal
-0.3
444
Normal
-0.3
824
Normal
-0.3
558
Normal
-0.3
954
Normal
-0.3
468
Normal
-0.3
364
Normal
-0.3
627
Tumor
-0.3
456
Normal
-0.3
478
Normal
-0.3
641
Tumor
-0.3
383
Tumor
-0.3
354
Normal
-0.3
498
Normal
-0.4
415
Tumor
-0.4
384
Normal
-0.4
912
Normal
-0.4
563
Tumor
-0.4
672
Normal
-0.4
514
Normal
-0.4
127
Tumor
-0.4
192
Normal
-0.4
1045
Tumor
-0.4
884
Normal
-0.4
863
Tumor
-0.5
818
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.