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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HLA-E is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
100.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
970.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
503.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
502.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
500.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
422.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
404.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
390.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
378.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
364.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
363.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
356.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
326.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
312.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
303.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
303.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
298.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
298.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
295.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
289.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
285.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
283.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
278.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
277.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
277.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
255.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
252.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
250.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
247.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
245.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
240.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
239.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
232.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
228.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
224.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
220.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
220.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
219.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
219.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
217.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
213.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
209.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
208.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
208.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
207.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
206.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
205.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
203.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
203.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
202.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
198.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
198.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
197.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
197.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
195.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
195.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
194.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
187.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
185.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
184.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
184.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
182.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
181.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
178.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
177.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
177.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
172.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
172.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
171.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
167.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
166.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
162.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
158.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
157.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
157.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
156.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
156.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
155.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
155.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
154.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
153.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
152.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
152.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
152.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
150.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
148.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
148.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
148.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
147.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
145.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
144.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
142.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
139.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
138.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
138.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
137.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
136.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
134.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
134.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
130.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
129.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
129.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
129.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
128.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
128.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
126.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
124.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
124.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
124.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
123.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
121.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
120.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
119.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
119.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
117.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
117.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
116.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
116.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
116.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
116.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
116.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
116.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
115.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
114.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
113.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
112.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
112.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
111.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
111.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
111.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
110.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
110.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
109.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
108.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
108.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
107.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
107.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
107.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
106.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
103.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
103.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
103.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
101.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
100.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
100.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
100.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
98.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
98.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
98.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
97.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
97.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
97.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
96.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
95.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
94.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
94.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
93.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
93.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
93.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
91.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
91.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
91.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
90.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
90.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
89.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
86.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
86.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
84.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
83.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
83.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
82.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
81.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
81.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
80.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
79.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
79.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
78.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
78.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
78.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
77.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
77.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
77.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
75.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
75.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
75.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
74.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
73.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
73.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
73.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
73.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
72.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
71.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
65.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
65.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
64.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
64.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
62.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
61.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
57.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
56.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
52.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
52.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
46.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
46.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.3
937
Tumor
1.2
917
Tumor
1.1
823
Tumor
1.0
213
Tumor
0.9
467
Tumor
0.9
915
Tumor
0.9
262
Normal
0.9
147
Tumor
0.8
211
Tumor
0.8
524
Normal
0.8
661
Tumor
0.8
471
Tumor
0.7
113
Tumor
0.7
188
Normal
0.7
857
Tumor
0.7
861
Tumor
0.7
217
Tumor
0.7
685
Tumor
0.7
516
Normal
0.7
492
Normal
0.6
724
Normal
0.6
434
Normal
0.6
126
Normal
0.6
261
Tumor
0.6
686
Normal
0.6
185
Tumor
0.5
977
Tumor
0.5
1031
Tumor
0.5
385
Tumor
0.5
536
Normal
0.5
966
Normal
0.5
383
Tumor
0.5
916
Normal
0.5
268
Normal
0.5
343
Tumor
0.5
451
Tumor
0.5
955
Tumor
0.5
755
Tumor
0.4
171
Tumor
0.4
553
Tumor
0.4
146
Normal
0.4
395
Tumor
0.4
125
Tumor
0.4
721
Tumor
0.4
978
Normal
0.4
883
Tumor
0.4
1043
Tumor
0.4
666
Normal
0.4
231
Tumor
0.4
267
Tumor
0.4
386
Normal
0.4
224
Normal
0.4
446
Normal
0.4
187
Tumor
0.3
277
Tumor
0.3
538
Normal
0.3
135
Tumor
0.3
387
Tumor
0.3
914
Normal
0.3
715
Tumor
0.3
353
Tumor
0.3
443
Tumor
0.3
218
Normal
0.3
327
Tumor
0.3
195
Tumor
0.3
212
Normal
0.3
145
Tumor
0.3
487
Tumor
0.3
272
Normal
0.3
344
Normal
0.3
138
Normal
0.3
498
Normal
0.3
816
Normal
0.3
918
Normal
0.3
396
Normal
0.2
362
Normal
0.2
452
Normal
0.2
628
Normal
0.2
954
Normal
0.2
191
Tumor
0.2
814
Normal
0.2
956
Normal
0.2
468
Normal
0.2
514
Normal
0.2
425
Tumor
0.2
444
Normal
0.2
415
Tumor
0.2
432
Normal
0.2
221
Tumor
0.2
192
Normal
0.2
528
Normal
0.2
574
Normal
0.2
491
Tumor
0.2
112
Tumor
0.2
493
Tumor
0.2
375
Tumor
0.2
858
Normal
0.2
286
Normal
0.2
573
Tumor
0.2
922
Normal
0.2
214
Normal
0.2
142
Normal
0.2
535
Tumor
0.1
662
Normal
0.1
523
Tumor
0.1
433
Tumor
0.1
416
Normal
0.1
867
Tumor
0.1
384
Normal
0.1
162
Normal
0.1
696
Normal
0.1
355
Tumor
0.1
141
Tumor
0.1
558
Normal
0.1
445
Tumor
0.1
352
Normal
0.1
963
Tumor
0.1
554
Normal
0.1
815
Tumor
0.1
926
Normal
0.1
478
Normal
0.1
368
Normal
0.1
778
Normal
0.1
716
Normal
0.1
1044
Normal
0.1
456
Normal
0.0
392
Normal
0.0
161
Tumor
0.0
223
Tumor
0.0
232
Normal
0.0
136
Normal
0.0
968
Normal
0.0
455
Tumor
0.0
964
Normal
0.0
464
Normal
0.0
672
Normal
0.0
137
Tumor
0.0
818
Normal
0.0
114
Normal
0.0
283
Tumor
0.0
394
Normal
0.0
172
Normal
0.0
951
Tumor
0.0
526
Normal
0.0
518
Normal
0.0
635
Tumor
0.0
817
Tumor
0.0
413
Tumor
0.0
648
Normal
0.0
124
Normal
0.0
488
Normal
0.0
461
Tumor
0.0
913
Tumor
0.0
222
Normal
0.0
258
Normal
0.0
354
Normal
0.0
938
Normal
0.0
388
Normal
0.0
284
Normal
0.0
882
Normal
0.0
1014
Normal
0.0
127
Tumor
0.0
665
Tumor
0.0
328
Normal
0.0
863
Tumor
0.0
627
Tumor
0.0
567
Tumor
0.0
312
Normal
0.0
376
Normal
-0.1
111
Normal
-0.1
982
Normal
-0.1
414
Normal
-0.1
641
Tumor
-0.1
722
Normal
-0.1
497
Tumor
-0.1
482
Normal
-0.1
472
Normal
-0.1
824
Normal
-0.1
196
Normal
-0.1
391
Tumor
-0.1
984
Normal
-0.1
958
Normal
-0.1
878
Normal
-0.1
952
Normal
-0.1
925
Tumor
-0.1
393
Tumor
-0.1
1015
Tumor
-0.1
481
Tumor
-0.1
228
Normal
-0.1
421
Tumor
-0.1
278
Normal
-0.1
494
Normal
-0.1
884
Normal
-0.1
1028
Normal
-0.1
874
Normal
-0.1
852
Normal
-0.1
366
Normal
-0.1
424
Normal
-0.1
1027
Tumor
-0.1
271
Tumor
-0.1
361
Tumor
-0.1
881
Tumor
-0.1
568
Normal
-0.1
866
Normal
-0.1
563
Tumor
-0.1
462
Normal
-0.1
976
Normal
-0.1
132
Normal
-0.1
422
Normal
-0.1
663
Tumor
-0.1
777
Tumor
-0.2
298
Normal
-0.2
975
Tumor
-0.2
358
Normal
-0.2
186
Normal
-0.2
426
Normal
-0.2
342
Normal
-0.2
351
Tumor
-0.2
367
Tumor
-0.2
873
Tumor
-0.2
564
Normal
-0.2
148
Normal
-0.2
738
Normal
-0.2
447
Tumor
-0.2
525
Tumor
-0.2
572
Normal
-0.2
862
Normal
-0.2
257
Tumor
-0.2
713
Tumor
-0.2
314
Normal
-0.2
727
Tumor
-0.2
364
Normal
-0.2
636
Normal
-0.2
474
Normal
-0.2
953
Tumor
-0.2
436
Normal
-0.2
466
Normal
-0.2
744
Normal
-0.2
463
Tumor
-0.2
851
Tumor
-0.2
728
Normal
-0.3
546
Normal
-0.3
423
Tumor
-0.3
671
Tumor
-0.3
515
Tumor
-0.3
742
Normal
-0.3
697
Tumor
-0.3
356
Normal
-0.3
664
Normal
-0.3
412
Normal
-0.3
745
Tumor
-0.3
483
Tumor
-0.3
1046
Normal
-0.3
428
Normal
-0.3
545
Tumor
-0.3
1042
Normal
-0.3
944
Normal
-0.3
924
Normal
-0.3
864
Normal
-0.3
534
Normal
-0.3
723
Tumor
-0.3
714
Normal
-0.3
527
Tumor
-0.3
448
Normal
-0.3
128
Normal
-0.3
756
Normal
-0.3
313
Tumor
-0.3
698
Normal
-0.3
1045
Tumor
-0.3
618
Normal
-0.4
332
Normal
-0.4
1016
Normal
-0.4
1022
Normal
-0.4
943
Tumor
-0.4
533
Tumor
-0.4
227
Tumor
-0.4
1041
Tumor
-0.4
311
Tumor
-0.4
513
Tumor
-0.4
813
Tumor
-0.4
1013
Tumor
-0.4
484
Normal
-0.4
365
Tumor
-0.4
786
Normal
-0.4
868
Normal
-0.4
785
Tumor
-0.4
967
Tumor
-0.4
297
Tumor
-0.4
877
Tumor
-0.4
1026
Normal
-0.4
695
Tumor
-0.4
647
Tumor
-0.4
357
Tumor
-0.4
912
Normal
-0.4
981
Tumor
-0.4
617
Tumor
-0.5
865
Tumor
-0.5
642
Normal
-0.5
1025
Tumor
-0.5
923
Tumor
-0.5
341
Tumor
-0.5
431
Tumor
-0.5
741
Tumor
-0.5
921
Tumor
-0.5
363
Tumor
-0.5
435
Tumor
-0.5
123
Tumor
-0.5
427
Tumor
-0.5
1032
Normal
-0.5
285
Tumor
-0.6
1021
Tumor
-0.6
616
Normal
-0.6
571
Tumor
-0.6
615
Tumor
-0.6
983
Tumor
-0.6
957
Tumor
-0.6
477
Tumor
-0.6
737
Tumor
-0.6
411
Tumor
-0.7
517
Tumor
-0.7
965
Tumor
-0.7
537
Tumor
-0.7
746
Normal
-0.7
473
Tumor
-0.7
331
Tumor
-0.8
465
Tumor
-0.9
911
Tumor
-1.0
131
Tumor
-1.1
743
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.