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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
125.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
106.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
102.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
101.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
101.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
101.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
100.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
97.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
94.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
94.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
91.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
90.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
90.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
89.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
88.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
88.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
87.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
85.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
85.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
84.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
83.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
82.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
81.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
79.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
79.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
78.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
77.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
76.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
75.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
75.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
74.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
73.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
72.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
72.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
71.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
70.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
70.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
70.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
70.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
68.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
68.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
67.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
65.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
64.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
64.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
62.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
61.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
61.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
61.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
60.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
58.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
57.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
57.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
57.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
55.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
51.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
50.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
50.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
50.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
50.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
49.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
48.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
48.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
47.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
47.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
45.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
45.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
44.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
43.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
42.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
41.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
40.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
38.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
36.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.6
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
389.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
244.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
200.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
196.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
191.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
186.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
186.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
183.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
172.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
162.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
157.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
157.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
151.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
149.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
147.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
142.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
139.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
132.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
129.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
129.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
128.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
126.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
125.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
123.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
120.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
119.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
116.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
115.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
114.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
114.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
113.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
110.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
109.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
107.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
107.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
106.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
105.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
103.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
103.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
103.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
102.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
101.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
101.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
99.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
99.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
97.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
96.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
95.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
94.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
91.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
91.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
90.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
90.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
89.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
89.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
89.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
87.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
87.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
86.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
86.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
86.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
86.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
83.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
82.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
81.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
81.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
80.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
79.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
78.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
77.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
76.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
76.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
76.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
74.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
74.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
74.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
73.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
72.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
72.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
72.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
71.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
71.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
69.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
69.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
69.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
68.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
68.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
68.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
68.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
68.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
67.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
67.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
66.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
66.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
66.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
63.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
63.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
62.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
62.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
61.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
61.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
60.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
60.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
60.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
60.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
59.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
59.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
56.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
56.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
55.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
54.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
53.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
53.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
52.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
50.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
49.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
44.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
41.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.6
951
Tumor
1.4
425
Tumor
1.3
355
Tumor
1.1
387
Tumor
1.1
487
Tumor
1.1
923
Tumor
1.0
123
Tumor
1.0
865
Tumor
1.0
313
Tumor
1.0
1027
Tumor
1.0
695
Tumor
1.0
277
Tumor
0.9
357
Tumor
0.9
977
Tumor
0.9
571
Tumor
0.8
1021
Tumor
0.8
161
Tumor
0.7
473
Tumor
0.7
953
Tumor
0.7
915
Tumor
0.7
1013
Tumor
0.7
141
Tumor
0.7
497
Tumor
0.7
515
Tumor
0.7
413
Tumor
0.7
957
Tumor
0.7
911
Tumor
0.7
777
Tumor
0.6
635
Tumor
0.6
171
Tumor
0.6
431
Tumor
0.6
465
Tumor
0.6
477
Tumor
0.5
573
Tumor
0.5
741
Tumor
0.4
1031
Tumor
0.4
921
Tumor
0.4
737
Tumor
0.4
527
Tumor
0.4
755
Tumor
0.4
867
Tumor
0.4
967
Tumor
0.4
493
Tumor
0.4
112
Tumor
0.4
661
Tumor
0.4
663
Tumor
0.4
925
Tumor
0.4
423
Tumor
0.4
341
Tumor
0.4
484
Normal
0.4
451
Tumor
0.4
817
Tumor
0.3
647
Tumor
0.3
523
Tumor
0.3
883
Tumor
0.3
491
Tumor
0.3
698
Normal
0.3
1045
Tumor
0.3
361
Tumor
0.3
481
Tumor
0.3
298
Normal
0.3
727
Tumor
0.3
125
Tumor
0.3
724
Normal
0.3
744
Normal
0.3
342
Normal
0.3
327
Tumor
0.3
483
Tumor
0.3
411
Tumor
0.3
463
Tumor
0.2
553
Tumor
0.2
488
Normal
0.2
427
Tumor
0.2
824
Normal
0.2
415
Tumor
0.2
1014
Normal
0.2
533
Tumor
0.2
743
Tumor
0.2
443
Tumor
0.2
221
Tumor
0.2
271
Tumor
0.2
912
Normal
0.2
878
Normal
0.2
436
Normal
0.2
877
Tumor
0.2
858
Normal
0.2
818
Normal
0.2
1046
Normal
0.2
1041
Tumor
0.2
863
Tumor
0.2
331
Tumor
0.2
482
Normal
0.2
426
Normal
0.1
517
Tumor
0.1
554
Normal
0.1
513
Tumor
0.1
267
Tumor
0.1
685
Tumor
0.1
196
Normal
0.1
185
Tumor
0.1
756
Normal
0.1
391
Tumor
0.1
922
Normal
0.1
746
Normal
0.1
882
Normal
0.1
314
Normal
0.1
952
Normal
0.1
545
Tumor
0.1
546
Normal
0.1
213
Tumor
0.1
938
Normal
0.1
448
Normal
0.1
445
Tumor
0.1
142
Normal
0.1
412
Normal
0.1
452
Normal
0.1
261
Tumor
0.1
162
Normal
0.1
217
Tumor
0.1
432
Normal
0.1
866
Normal
0.1
128
Normal
0.1
186
Normal
0.1
937
Tumor
0.1
862
Normal
0.1
472
Normal
0.1
714
Normal
0.1
696
Normal
0.1
884
Normal
0.1
414
Normal
0.1
135
Tumor
0.0
285
Tumor
0.0
778
Normal
0.0
648
Normal
0.0
461
Tumor
0.0
924
Normal
0.0
462
Normal
0.0
618
Normal
0.0
964
Normal
0.0
534
Normal
0.0
983
Tumor
0.0
955
Tumor
0.0
563
Tumor
0.0
433
Tumor
0.0
981
Tumor
0.0
785
Tumor
0.0
615
Tumor
0.0
664
Normal
0.0
984
Normal
0.0
1026
Normal
0.0
786
Normal
0.0
358
Normal
0.0
222
Normal
0.0
738
Normal
0.0
537
Tumor
0.0
742
Normal
0.0
428
Normal
0.0
328
Normal
0.0
278
Normal
0.0
394
Normal
0.0
356
Normal
0.0
666
Normal
0.0
332
Normal
0.0
124
Normal
0.0
516
Normal
0.0
1015
Tumor
-0.1
111
Normal
-0.1
881
Tumor
-0.1
861
Tumor
-0.1
926
Normal
-0.1
567
Tumor
-0.1
873
Tumor
-0.1
257
Tumor
-0.1
518
Normal
-0.1
422
Normal
-0.1
376
Normal
-0.1
1025
Tumor
-0.1
435
Tumor
-0.1
474
Normal
-0.1
572
Normal
-0.1
944
Normal
-0.1
636
Normal
-0.1
466
Normal
-0.1
231
Tumor
-0.1
392
Normal
-0.1
148
Normal
-0.1
1032
Normal
-0.1
352
Normal
-0.1
383
Tumor
-0.1
1016
Normal
-0.1
662
Normal
-0.1
456
Normal
-0.1
396
Normal
-0.1
568
Normal
-0.1
1044
Normal
-0.1
388
Normal
-0.1
954
Normal
-0.1
723
Tumor
-0.1
564
Normal
-0.1
424
Normal
-0.1
395
Tumor
-0.1
526
Normal
-0.1
385
Tumor
-0.1
232
Normal
-0.1
364
Normal
-0.1
966
Normal
-0.1
351
Tumor
-0.2
272
Normal
-0.2
136
Normal
-0.2
975
Tumor
-0.2
286
Normal
-0.2
218
Normal
-0.2
447
Tumor
-0.2
958
Normal
-0.2
494
Normal
-0.2
146
Normal
-0.2
968
Normal
-0.2
574
Normal
-0.2
918
Normal
-0.2
446
Normal
-0.2
874
Normal
-0.2
538
Normal
-0.2
672
Normal
-0.2
525
Tumor
-0.2
528
Normal
-0.2
416
Normal
-0.2
816
Normal
-0.2
464
Normal
-0.2
868
Normal
-0.2
498
Normal
-0.2
367
Tumor
-0.2
686
Normal
-0.2
642
Normal
-0.2
956
Normal
-0.2
132
Normal
-0.3
976
Normal
-0.3
1022
Normal
-0.3
1043
Tumor
-0.3
138
Normal
-0.3
864
Normal
-0.3
813
Tumor
-0.3
131
Tumor
-0.3
147
Tumor
-0.3
258
Normal
-0.3
114
Normal
-0.3
312
Normal
-0.3
716
Normal
-0.3
471
Tumor
-0.3
195
Tumor
-0.3
492
Normal
-0.3
982
Normal
-0.3
365
Tumor
-0.3
721
Tumor
-0.3
514
Normal
-0.3
943
Tumor
-0.3
343
Tumor
-0.3
557
Tumor
-0.3
137
Tumor
-0.3
728
Normal
-0.3
722
Normal
-0.3
223
Tumor
-0.3
617
Tumor
-0.3
172
Normal
-0.3
914
Normal
-0.3
852
Normal
-0.3
1028
Normal
-0.3
262
Normal
-0.3
284
Normal
-0.4
671
Tumor
-0.4
344
Normal
-0.4
1042
Normal
-0.4
665
Tumor
-0.4
823
Tumor
-0.4
362
Normal
-0.4
478
Normal
-0.4
268
Normal
-0.4
814
Normal
-0.4
227
Tumor
-0.4
127
Tumor
-0.4
354
Normal
-0.4
228
Normal
-0.4
366
Normal
-0.5
113
Tumor
-0.5
297
Tumor
-0.5
857
Tumor
-0.5
384
Normal
-0.5
916
Normal
-0.5
375
Tumor
-0.5
368
Normal
-0.5
386
Normal
-0.5
558
Normal
-0.5
524
Normal
-0.5
467
Tumor
-0.5
468
Normal
-0.5
715
Tumor
-0.5
963
Tumor
-0.5
212
Normal
-0.5
224
Normal
-0.5
283
Tumor
-0.5
978
Normal
-0.5
214
Normal
-0.5
697
Tumor
-0.5
851
Tumor
-0.5
628
Normal
-0.6
616
Normal
-0.6
713
Tumor
-0.6
126
Normal
-0.6
434
Normal
-0.6
444
Normal
-0.6
913
Tumor
-0.6
191
Tumor
-0.6
192
Normal
-0.6
455
Tumor
-0.7
363
Tumor
-0.7
815
Tumor
-0.7
421
Tumor
-0.7
353
Tumor
-0.7
536
Normal
-0.7
641
Tumor
-0.7
393
Tumor
-0.7
311
Tumor
-0.8
535
Tumor
-0.8
145
Tumor
-0.8
188
Normal
-0.9
627
Tumor
-0.9
187
Tumor
-1.0
917
Tumor
-1.1
745
Tumor
-1.5
211
Tumor
-2.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.