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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GDI1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
166.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
126.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
114.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
111.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
107.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
107.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
97.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
95.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
93.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
90.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
88.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
84.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
83.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
82.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
82.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
82.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
81.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
78.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
77.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
76.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
73.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
71.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
68.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
67.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
67.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
67.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
65.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
63.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
63.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
62.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
60.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
60.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
60.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
53.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
52.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
50.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
50.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
49.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
48.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
47.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
47.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
45.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
44.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
43.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
42.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
38.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GDI1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.8
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
205.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
133.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
128.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
123.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
120.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
108.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
104.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
101.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
101.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
99.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
95.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
94.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
90.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
88.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
86.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
85.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
84.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
83.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
80.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
78.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
78.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
77.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
77.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
75.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
73.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
72.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
72.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
70.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
69.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
69.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
69.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
68.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
68.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
68.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
68.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
67.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
66.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
63.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
61.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
61.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
60.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
57.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
56.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
56.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
48.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
47.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
47.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
47.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
44.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
43.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.8
685
Tumor
0.6
171
Tumor
0.5
1013
Tumor
0.5
863
Tumor
0.5
483
Tumor
0.4
527
Tumor
0.4
923
Tumor
0.4
813
Tumor
0.4
977
Tumor
0.4
123
Tumor
0.4
393
Tumor
0.4
261
Tumor
0.4
721
Tumor
0.3
137
Tumor
0.3
431
Tumor
0.3
147
Tumor
0.2
231
Tumor
0.2
192
Normal
0.2
741
Tumor
0.2
383
Tumor
0.2
124
Normal
0.2
635
Tumor
0.2
857
Tumor
0.2
777
Tumor
0.2
515
Tumor
0.2
327
Tumor
0.2
481
Tumor
0.2
111
Normal
0.2
785
Tumor
0.2
665
Tumor
0.1
921
Tumor
0.1
727
Tumor
0.1
196
Normal
0.1
455
Tumor
0.1
126
Normal
0.1
627
Tumor
0.1
463
Tumor
0.1
746
Normal
0.1
778
Normal
0.1
421
Tumor
0.1
424
Normal
0.1
478
Normal
0.1
128
Normal
0.1
185
Tumor
0.1
414
Normal
0.1
1044
Normal
0.1
1021
Tumor
0.1
186
Normal
0.1
365
Tumor
0.1
814
Normal
0.1
915
Tumor
0.1
218
Normal
0.1
224
Normal
0.1
433
Tumor
0.1
344
Normal
0.1
148
Normal
0.1
1025
Tumor
0.1
283
Tumor
0.1
737
Tumor
0.1
738
Normal
0.1
444
Normal
0.1
422
Normal
0.1
723
Tumor
0.1
114
Normal
0.1
1026
Normal
0.1
1022
Normal
0.1
162
Normal
0.1
312
Normal
0.1
824
Normal
0.1
873
Tumor
0.1
221
Tumor
0.1
112
Tumor
0.1
222
Normal
0.1
786
Normal
0.1
882
Normal
0.1
386
Normal
0.1
146
Normal
0.1
881
Tumor
0.1
952
Normal
0.1
866
Normal
0.1
572
Normal
0.1
445
Tumor
0.1
314
Normal
0.1
728
Normal
0.1
742
Normal
0.1
188
Normal
0.1
558
Normal
0.1
332
Normal
0.1
715
Tumor
0.1
448
Normal
0.1
823
Tumor
0.1
223
Tumor
0.1
228
Normal
0.1
955
Tumor
0.1
498
Normal
0.1
434
Normal
0.1
214
Normal
0.1
1028
Normal
0.1
212
Normal
0.1
874
Normal
0.1
664
Normal
0.1
818
Normal
0.1
564
Normal
0.1
568
Normal
0.1
861
Tumor
0.0
662
Normal
0.0
172
Normal
0.0
756
Normal
0.0
518
Normal
0.0
425
Tumor
0.0
394
Normal
0.0
284
Normal
0.0
864
Normal
0.0
342
Normal
0.0
432
Normal
0.0
513
Tumor
0.0
858
Normal
0.0
392
Normal
0.0
523
Tumor
0.0
536
Normal
0.0
298
Normal
0.0
514
Normal
0.0
142
Normal
0.0
354
Normal
0.0
428
Normal
0.0
816
Normal
0.0
884
Normal
0.0
914
Normal
0.0
976
Normal
0.0
852
Normal
0.0
362
Normal
0.0
286
Normal
0.0
528
Normal
0.0
271
Tumor
0.0
642
Normal
0.0
982
Normal
0.0
426
Normal
0.0
567
Tumor
0.0
384
Normal
0.0
1032
Normal
0.0
412
Normal
0.0
698
Normal
0.0
364
Normal
0.0
958
Normal
0.0
862
Normal
0.0
714
Normal
0.0
272
Normal
0.0
138
Normal
0.0
416
Normal
0.0
722
Normal
0.0
497
Tumor
0.0
686
Normal
0.0
978
Normal
0.0
878
Normal
0.0
132
Normal
0.0
1046
Normal
0.0
663
Tumor
0.0
358
Normal
0.0
136
Normal
0.0
257
Tumor
0.0
436
Normal
0.0
262
Normal
0.0
648
Normal
0.0
984
Normal
0.0
912
Normal
0.0
488
Normal
0.0
865
Tumor
0.0
716
Normal
0.0
387
Tumor
0.0
456
Normal
0.0
618
Normal
0.0
917
Tumor
0.0
815
Tumor
0.0
396
Normal
0.0
466
Normal
0.0
911
Tumor
0.0
232
Normal
0.0
925
Tumor
0.0
376
Normal
0.0
352
Normal
0.0
966
Normal
0.0
968
Normal
0.0
356
Normal
0.0
468
Normal
0.0
1016
Normal
0.0
546
Normal
0.0
1014
Normal
0.0
443
Tumor
0.0
672
Normal
0.0
851
Tumor
0.0
268
Normal
0.0
553
Tumor
0.0
213
Tumor
0.0
956
Normal
0.0
278
Normal
0.0
161
Tumor
0.0
526
Normal
0.0
617
Tumor
0.0
538
Normal
0.0
1042
Normal
0.0
524
Normal
0.0
696
Normal
0.0
388
Normal
0.0
563
Tumor
0.0
127
Tumor
0.0
341
Tumor
0.0
557
Tumor
0.0
195
Tumor
0.0
867
Tumor
0.0
474
Normal
0.0
191
Tumor
0.0
628
Normal
-0.1
366
Normal
-0.1
975
Tumor
-0.1
415
Tumor
-0.1
1015
Tumor
-0.1
472
Normal
-0.1
471
Tumor
-0.1
744
Normal
-0.1
868
Normal
-0.1
916
Normal
-0.1
574
Normal
-0.1
666
Normal
-0.1
938
Normal
-0.1
462
Normal
-0.1
981
Tumor
-0.1
311
Tumor
-0.1
211
Tumor
-0.1
331
Tumor
-0.1
636
Normal
-0.1
954
Normal
-0.1
944
Normal
-0.1
464
Normal
-0.1
131
Tumor
-0.1
482
Normal
-0.1
258
Normal
-0.1
343
Tumor
-0.1
492
Normal
-0.1
913
Tumor
-0.1
516
Normal
-0.1
924
Normal
-0.1
534
Normal
-0.1
918
Normal
-0.1
135
Tumor
-0.1
964
Normal
-0.1
217
Tumor
-0.1
883
Tumor
-0.1
368
Normal
-0.1
484
Normal
-0.1
113
Tumor
-0.1
525
Tumor
-0.1
446
Normal
-0.1
926
Normal
-0.1
277
Tumor
-0.1
125
Tumor
-0.1
141
Tumor
-0.1
285
Tumor
-0.1
616
Normal
-0.1
447
Tumor
-0.1
361
Tumor
-0.1
697
Tumor
-0.1
423
Tumor
-0.1
724
Normal
-0.1
615
Tumor
-0.1
363
Tumor
-0.1
537
Tumor
-0.1
145
Tumor
-0.1
647
Tumor
-0.1
227
Tumor
-0.1
1043
Tumor
-0.1
554
Normal
-0.1
367
Tumor
-0.1
353
Tumor
-0.1
943
Tumor
-0.1
357
Tumor
-0.1
953
Tumor
-0.1
745
Tumor
-0.1
328
Normal
-0.1
494
Normal
-0.1
461
Tumor
-0.2
1045
Tumor
-0.2
477
Tumor
-0.2
661
Tumor
-0.2
641
Tumor
-0.2
297
Tumor
-0.2
922
Normal
-0.2
351
Tumor
-0.2
963
Tumor
-0.2
487
Tumor
-0.2
435
Tumor
-0.2
427
Tumor
-0.2
452
Normal
-0.2
451
Tumor
-0.2
187
Tumor
-0.2
493
Tumor
-0.2
755
Tumor
-0.2
467
Tumor
-0.2
695
Tumor
-0.2
817
Tumor
-0.2
1031
Tumor
-0.2
413
Tumor
-0.2
573
Tumor
-0.2
951
Tumor
-0.2
545
Tumor
-0.2
983
Tumor
-0.2
375
Tumor
-0.2
313
Tumor
-0.2
937
Tumor
-0.2
713
Tumor
-0.2
355
Tumor
-0.3
385
Tumor
-0.3
671
Tumor
-0.3
1041
Tumor
-0.3
517
Tumor
-0.3
411
Tumor
-0.3
571
Tumor
-0.3
395
Tumor
-0.3
743
Tumor
-0.4
877
Tumor
-0.4
391
Tumor
-0.4
267
Tumor
-0.4
473
Tumor
-0.4
491
Tumor
-0.4
465
Tumor
-0.4
535
Tumor
-0.5
957
Tumor
-0.5
533
Tumor
-0.6
967
Tumor
-0.6
965
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
