MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:54.3 nTPM
GTEx:17.0 nTPM
FANTOM5:4.4 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:394.4 nTPM
Allen mouse:28.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
1827 Male, age 72, unknown 47.1
2219 Male, age 76, both hemispheres 41.8
2411 Female, age 72, unknown 41.0
1870 Female, age 42, unknown 39.7
2666 Male, age 74, left hemisphere 35.5
1833 Male, age 53, unknown 34.5
2586 Male, age 75, left hemisphere 33.2
1830 Male, age 51, unknown 32.2
2828 Female, age 72, unknown 31.5
2019 Male, age 18, unknown 29.1
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 43.4
2750 Male, age 76, both hemispheres 36.3
1828 Male, age 53, unknown 33.4
2016 Female, age 72, unknown 29.6
Inferior colliculus
nTPM: 48.1
2849 Male, age 72, unknown 52.8
2097 Female, age 72, unknown 52.5
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 41.4
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Periaquaductal grey, anterior
nTPM: 40.8
1947 Male, age 18, unknown 50.2
1795 Male, age 51, unknown 38.4
2502 Female, age 75, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 45.0
1840 Male, age 53, unknown 53.3
2850 Male, age 76, both hemispheres 44.0
2464 Female, age 72, unknown 43.3
1831 Male, age 72, unknown 39.5
Periaquaductal grey, lateral
nTPM: 35.8
2140 Male, age 76, both hemispheres 39.7
2053 Male, age 18, unknown 39.1
2272 Male, age 74, both hemispheres 28.7
Pretectal area
nTPM: 45.4
1816 Male, age 51, unknown 54.6
1944 Female, age 72, unknown 51.6
2224 Female, age 72, unknown 50.3
2007 Male, age 72, unknown 50.2
1817 Female, age 42, unknown 47.0
2825 Male, age 18, unknown 47.0
1815 Male, age 53, unknown 44.7
2667 Female, age 75, unknown 44.6
2316 Male, age 76, right hemisphere 39.1
2407 Male, age 75, both hemispheres 37.7
2273 Male, age 74, both hemispheres 32.3
Red nucleus
nTPM: 29.4
2584 Male, age 75, left hemisphere 39.0
2725 Female, age 75, unknown 35.4
2588 Male, age 74, left hemisphere 31.4
2823 Male, age 76, right hemisphere 30.2
1821 Female, age 72, unknown 29.9
2785 Male, age 18, unknown 29.7
1954 Female, age 42, unknown 29.6
2503 Female, age 72, unknown 27.7
1865 Male, age 51, unknown 25.6
2769 Male, age 72, unknown 25.6
2227 Male, age 72, unknown 25.4
1904 Male, age 53, unknown 23.7
Substantia nigra
nTPM: 36.2
1889 Female, age 72, unknown 45.9
1941 Male, age 53, unknown 45.2
2241 Male, age 72, unknown 41.6
2590 Female, age 75, unknown 38.7
2665 Male, age 74, both hemispheres 36.6
1916 Female, age 42, unknown 34.2
1851 Male, age 51, unknown 31.3
2409 Female, age 72, unknown 31.1
2583 Male, age 75, right hemisphere 29.9
2699 Male, age 18, unknown 27.6
Superior colliculus
nTPM: 37.6
1895 Male, age 76, right hemisphere 47.7
2087 Female, age 72, unknown 45.1
1839 Male, age 51, unknown 42.5
1796 Male, age 53, unknown 41.5
2664 Male, age 75, both hemispheres 40.6
2261 Male, age 18, unknown 40.4
2668 Female, age 75, unknown 33.7
2587 Male, age 74, left hemisphere 31.1
1913 Female, age 42, unknown 28.4
1995 Male, age 72, unknown 24.9
Ventral tegmental area
nTPM: 37.0
2218 Male, age 76, both hemispheres 42.8
1942 Male, age 51, unknown 40.2
1915 Female, age 42, unknown 38.0
2021 Male, age 53, unknown 36.1
2410 Female, age 72, unknown 33.3
2223 Female, age 72, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 62.2
Min nTPM: 5.6
Std nTPM: 8.6
Median nTPM: 14.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 42.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 35.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 33.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 28.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 28.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 28.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.4
FF:10158-103A5 76 years, female 4.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.6
Samples: 4

Max nTPM: 48.2
Min nTPM: 7.5
Sample A Female 46.4
Sample B Female 24.3
Sample C Male 48.2
Sample D Male 7.5
Midbrain
nTPM: 37.3
Samples: 4

Max nTPM: 61.6
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 35.6
Sample C Male 40.0
Sample D Male 61.6
Periaqueductal gray
nTPM: 44.7
Samples: 3

Max nTPM: 56.8
Min nTPM: 38.3
Sample B Female 39.0
Sample C Male 56.8
Sample D Male 38.3
Superior colliculi
nTPM: 31.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 15.4
Sample A Female 45.0
Sample B Female 15.4
Sample C Male 25.6
Sample D Male 40.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 394.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 394.4
Samples: 4

Max nTPM: 439.9
Min nTPM: 329.0
Sample A Male 329.0
Sample B Male 418.0
Sample C Female 439.9
Sample D Female 390.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 28.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 28.5
67765726 Antisense, RP_040916_01_F11, Mouse strain C57BL/6J (56 days, male) 31.2
70743888 Antisense, RP_050725_01_H12, Mouse strain C57BL/6J (56 days, male) 25.7

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