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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SREBF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
141.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
109.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
109.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
109.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
96.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
95.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
91.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
85.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
83.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
80.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
76.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
73.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
73.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
72.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
72.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
72.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
71.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
68.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
67.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
65.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
63.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
61.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
60.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
60.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
57.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
54.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
54.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
52.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
48.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
47.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
44.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SREBF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
112.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
79.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
76.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
71.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
67.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
62.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
59.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
56.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
0.9
171
Tumor
0.9
131
Tumor
0.9
617
Tumor
0.9
331
Tumor
0.9
363
Tumor
0.8
641
Tumor
0.8
983
Tumor
0.8
965
Tumor
0.8
147
Tumor
0.8
465
Tumor
0.7
921
Tumor
0.7
391
Tumor
0.7
1043
Tumor
0.7
695
Tumor
0.6
161
Tumor
0.6
231
Tumor
0.6
277
Tumor
0.6
361
Tumor
0.6
517
Tumor
0.6
647
Tumor
0.6
267
Tumor
0.6
464
Normal
0.6
1025
Tumor
0.6
574
Normal
0.6
567
Tumor
0.5
715
Tumor
0.5
571
Tumor
0.5
568
Normal
0.5
135
Tumor
0.5
815
Tumor
0.5
563
Tumor
0.5
553
Tumor
0.5
473
Tumor
0.5
477
Tumor
0.4
975
Tumor
0.4
1031
Tumor
0.4
817
Tumor
0.4
967
Tumor
0.4
923
Tumor
0.4
953
Tumor
0.4
258
Normal
0.4
416
Normal
0.4
314
Normal
0.4
671
Tumor
0.4
351
Tumor
0.4
271
Tumor
0.4
863
Tumor
0.4
364
Normal
0.4
564
Normal
0.4
186
Normal
0.4
533
Tumor
0.4
471
Tumor
0.3
297
Tumor
0.3
356
Normal
0.3
196
Normal
0.3
487
Tumor
0.3
435
Tumor
0.3
357
Tumor
0.3
883
Tumor
0.3
332
Normal
0.3
393
Tumor
0.3
535
Tumor
0.3
742
Normal
0.3
648
Normal
0.3
777
Tumor
0.3
977
Tumor
0.3
663
Tumor
0.3
413
Tumor
0.3
912
Normal
0.3
497
Tumor
0.3
426
Normal
0.3
285
Tumor
0.3
222
Normal
0.3
1021
Tumor
0.3
534
Normal
0.3
481
Tumor
0.3
727
Tumor
0.3
743
Tumor
0.3
313
Tumor
0.2
411
Tumor
0.2
938
Normal
0.2
957
Tumor
0.2
745
Tumor
0.2
483
Tumor
0.2
756
Normal
0.2
365
Tumor
0.2
462
Normal
0.2
443
Tumor
0.2
187
Tumor
0.2
523
Tumor
0.2
926
Normal
0.2
343
Tumor
0.2
367
Tumor
0.2
132
Normal
0.2
468
Normal
0.2
884
Normal
0.2
954
Normal
0.2
145
Tumor
0.2
864
Normal
0.2
515
Tumor
0.2
257
Tumor
0.2
272
Normal
0.2
951
Tumor
0.2
415
Tumor
0.2
882
Normal
0.2
661
Tumor
0.2
312
Normal
0.2
466
Normal
0.2
665
Tumor
0.2
428
Normal
0.2
572
Normal
0.2
185
Tumor
0.2
818
Normal
0.2
723
Tumor
0.2
738
Normal
0.2
1016
Normal
0.2
672
Normal
0.2
414
Normal
0.2
387
Tumor
0.2
424
Normal
0.2
664
Normal
0.2
328
Normal
0.2
915
Tumor
0.2
484
Normal
0.2
232
Normal
0.2
412
Normal
0.2
874
Normal
0.2
918
Normal
0.2
445
Tumor
0.2
558
Normal
0.1
423
Tumor
0.1
546
Normal
0.1
268
Normal
0.1
964
Normal
0.1
865
Tumor
0.1
862
Normal
0.1
451
Tumor
0.1
982
Normal
0.1
298
Normal
0.1
262
Normal
0.1
978
Normal
0.1
286
Normal
0.1
221
Tumor
0.1
138
Normal
0.1
814
Normal
0.1
172
Normal
0.1
666
Normal
0.1
482
Normal
0.1
851
Tumor
0.1
1046
Normal
0.1
1026
Normal
0.1
227
Tumor
0.1
311
Tumor
0.1
1014
Normal
0.1
917
Tumor
0.1
616
Normal
0.1
146
Normal
0.1
728
Normal
0.1
461
Tumor
0.1
162
Normal
0.1
537
Tumor
0.1
554
Normal
0.1
421
Tumor
0.1
474
Normal
0.1
422
Normal
0.1
355
Tumor
0.1
786
Normal
0.1
813
Tumor
0.1
141
Tumor
0.1
136
Normal
0.1
662
Normal
0.1
488
Normal
0.1
956
Normal
0.1
472
Normal
0.1
385
Tumor
0.1
513
Tumor
0.1
218
Normal
0.1
493
Tumor
0.0
958
Normal
0.0
916
Normal
0.0
785
Tumor
0.0
968
Normal
0.0
538
Normal
0.0
498
Normal
0.0
628
Normal
0.0
698
Normal
0.0
518
Normal
0.0
1042
Normal
0.0
984
Normal
0.0
452
Normal
0.0
557
Tumor
0.0
963
Tumor
0.0
866
Normal
0.0
188
Normal
0.0
922
Normal
0.0
724
Normal
0.0
857
Tumor
0.0
278
Normal
0.0
744
Normal
0.0
615
Tumor
0.0
213
Tumor
0.0
937
Tumor
0.0
327
Tumor
0.0
1013
Tumor
0.0
868
Normal
0.0
878
Normal
0.0
1015
Tumor
0.0
142
Normal
0.0
494
Normal
0.0
427
Tumor
0.0
467
Tumor
0.0
528
Normal
0.0
924
Normal
0.0
455
Tumor
0.0
148
Normal
0.0
436
Normal
0.0
433
Tumor
0.0
228
Normal
0.0
1032
Normal
0.0
873
Tumor
0.0
261
Tumor
0.0
944
Normal
0.0
191
Tumor
0.0
911
Tumor
0.0
914
Normal
0.0
212
Normal
0.0
746
Normal
0.0
224
Normal
0.0
573
Tumor
0.0
635
Tumor
-0.1
223
Tumor
-0.1
217
Tumor
-0.1
525
Tumor
-0.1
981
Tumor
-0.1
214
Normal
-0.1
966
Normal
-0.1
1022
Normal
-0.1
755
Tumor
-0.1
388
Normal
-0.1
478
Normal
-0.1
881
Tumor
-0.1
877
Tumor
-0.1
284
Normal
-0.1
913
Tumor
-0.1
432
Normal
-0.1
448
Normal
-0.1
446
Normal
-0.1
394
Normal
-0.1
976
Normal
-0.1
627
Tumor
-0.1
514
Normal
-0.1
824
Normal
-0.1
955
Tumor
-0.1
516
Normal
-0.1
1044
Normal
-0.1
434
Normal
-0.1
447
Tumor
-0.1
943
Tumor
-0.1
362
Normal
-0.1
526
Normal
-0.1
1041
Tumor
-0.1
456
Normal
-0.1
952
Normal
-0.1
492
Normal
-0.1
823
Tumor
-0.1
741
Tumor
-0.1
1028
Normal
-0.1
858
Normal
-0.1
778
Normal
-0.1
618
Normal
-0.1
425
Tumor
-0.1
444
Normal
-0.1
642
Normal
-0.2
386
Normal
-0.2
1027
Tumor
-0.2
137
Tumor
-0.2
714
Normal
-0.2
211
Tumor
-0.2
192
Normal
-0.2
737
Tumor
-0.2
536
Normal
-0.2
195
Tumor
-0.2
925
Tumor
-0.2
713
Tumor
-0.2
861
Tumor
-0.2
431
Tumor
-0.2
852
Normal
-0.2
816
Normal
-0.3
283
Tumor
-0.3
716
Normal
-0.3
1045
Tumor
-0.3
524
Normal
-0.3
527
Tumor
-0.3
697
Tumor
-0.3
366
Normal
-0.3
545
Tumor
-0.4
867
Tumor
-0.4
384
Normal
-0.4
721
Tumor
-0.4
368
Normal
-0.4
352
Normal
-0.4
696
Normal
-0.4
722
Normal
-0.4
375
Tumor
-0.5
354
Normal
-0.5
376
Normal
-0.5
392
Normal
-0.5
686
Normal
-0.5
491
Tumor
-0.5
395
Tumor
-0.5
636
Normal
-0.5
341
Tumor
-0.6
396
Normal
-0.6
383
Tumor
-0.7
685
Tumor
-0.7
353
Tumor
-0.8
344
Normal
-0.8
342
Normal
-0.9
358
Normal
-1.0
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
