MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:37.9 nTPM
GTEx:15.2 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:2.1 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
2019 Male, age 18, unknown 50.6
2828 Female, age 72, unknown 36.9
2586 Male, age 75, left hemisphere 32.0
1833 Male, age 53, unknown 30.2
1830 Male, age 51, unknown 29.8
1827 Male, age 72, unknown 28.8
2411 Female, age 72, unknown 27.3
1870 Female, age 42, unknown 27.1
2666 Male, age 74, left hemisphere 24.0
2219 Male, age 76, both hemispheres 20.4
Dorsal raphe nucleus
nTPM: 37.5
2016 Female, age 72, unknown 51.5
1828 Male, age 53, unknown 46.0
2047 Male, age 72, unknown 40.2
2298 Female, age 72, unknown 27.9
2750 Male, age 76, both hemispheres 21.9
Inferior colliculus
nTPM: 31.4
1848 Female, age 42, unknown 34.1
2849 Male, age 72, unknown 31.9
1890 Male, age 53, unknown 31.4
2097 Female, age 72, unknown 28.0
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 16.9
1795 Male, age 51, unknown 23.8
1947 Male, age 18, unknown 14.4
2502 Female, age 75, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 31.9
2850 Male, age 76, both hemispheres 36.5
2464 Female, age 72, unknown 31.2
1831 Male, age 72, unknown 30.2
1840 Male, age 53, unknown 29.9
Periaquaductal grey, lateral
nTPM: 37.9
2140 Male, age 76, both hemispheres 44.6
2272 Male, age 74, both hemispheres 36.3
2053 Male, age 18, unknown 32.8
Pretectal area
nTPM: 34.6
2273 Male, age 74, both hemispheres 46.5
1944 Female, age 72, unknown 42.1
1817 Female, age 42, unknown 40.4
2316 Male, age 76, right hemisphere 39.8
2224 Female, age 72, unknown 39.0
2667 Female, age 75, unknown 34.3
1815 Male, age 53, unknown 31.3
2007 Male, age 72, unknown 30.5
1816 Male, age 51, unknown 28.1
2407 Male, age 75, both hemispheres 24.8
2825 Male, age 18, unknown 24.0
Red nucleus
nTPM: 34.5
2588 Male, age 74, left hemisphere 42.6
2785 Male, age 18, unknown 41.9
1954 Female, age 42, unknown 37.4
2725 Female, age 75, unknown 36.6
2769 Male, age 72, unknown 36.1
2503 Female, age 72, unknown 35.6
2227 Male, age 72, unknown 35.0
2823 Male, age 76, right hemisphere 34.4
1821 Female, age 72, unknown 34.2
1904 Male, age 53, unknown 31.9
1865 Male, age 51, unknown 31.2
2584 Male, age 75, left hemisphere 16.8
Substantia nigra
nTPM: 34.1
1916 Female, age 42, unknown 41.5
2409 Female, age 72, unknown 41.4
2583 Male, age 75, right hemisphere 38.2
2590 Female, age 75, unknown 36.6
2699 Male, age 18, unknown 32.6
1851 Male, age 51, unknown 31.3
1889 Female, age 72, unknown 31.2
2241 Male, age 72, unknown 30.9
1941 Male, age 53, unknown 29.4
2665 Male, age 74, both hemispheres 27.9
Superior colliculus
nTPM: 28.7
2087 Female, age 72, unknown 40.8
1796 Male, age 53, unknown 31.5
2668 Female, age 75, unknown 30.7
1995 Male, age 72, unknown 29.6
1839 Male, age 51, unknown 28.6
2587 Male, age 74, left hemisphere 26.8
1895 Male, age 76, right hemisphere 26.0
2261 Male, age 18, unknown 25.3
2664 Male, age 75, both hemispheres 24.9
1913 Female, age 42, unknown 22.5
Ventral tegmental area
nTPM: 31.4
2410 Female, age 72, unknown 37.8
1915 Female, age 42, unknown 34.6
2218 Male, age 76, both hemispheres 32.4
1942 Male, age 51, unknown 30.0
2021 Male, age 53, unknown 30.0
2223 Female, age 72, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 72.2
Min nTPM: 1.2
Std nTPM: 10.3
Median nTPM: 13.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 72.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 37.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 32.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 31.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 29.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 29.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 29.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 3.0
Sample C Male 3.4
Sample D Male 4.2
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 7.1
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 4.5
Sample C Male 7.1
Sample D Male 4.2
Periaqueductal gray
nTPM: 4.3
Samples: 3

Max nTPM: 4.4
Min nTPM: 4.3
Sample B Female 4.3
Sample C Male 4.4
Sample D Male 4.3
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 11.3
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 7.1
Sample C Male 11.3
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.6
Sample A Male 1.6
Sample B Male 2.5
Sample C Female 2.0
Sample D Female 2.2

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