We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OPA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OPA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
777
Tumor
1.4
863
Tumor
1.3
487
Tumor
1.1
513
Tumor
1.0
1027
Tumor
0.9
515
Tumor
0.8
755
Tumor
0.8
227
Tumor
0.8
257
Tumor
0.7
921
Tumor
0.7
741
Tumor
0.7
1043
Tumor
0.7
785
Tumor
0.6
1041
Tumor
0.6
911
Tumor
0.6
615
Tumor
0.6
112
Tumor
0.6
553
Tumor
0.6
231
Tumor
0.6
665
Tumor
0.6
1045
Tumor
0.5
461
Tumor
0.5
537
Tumor
0.5
883
Tumor
0.5
137
Tumor
0.5
915
Tumor
0.5
127
Tumor
0.5
465
Tumor
0.5
483
Tumor
0.5
1015
Tumor
0.5
361
Tumor
0.5
981
Tumor
0.5
525
Tumor
0.5
967
Tumor
0.5
567
Tumor
0.5
571
Tumor
0.5
435
Tumor
0.4
471
Tumor
0.4
491
Tumor
0.4
727
Tumor
0.4
867
Tumor
0.4
937
Tumor
0.4
743
Tumor
0.4
685
Tumor
0.4
477
Tumor
0.4
411
Tumor
0.4
953
Tumor
0.4
261
Tumor
0.4
161
Tumor
0.3
641
Tumor
0.3
328
Normal
0.3
365
Tumor
0.3
431
Tumor
0.3
271
Tumor
0.3
647
Tumor
0.3
865
Tumor
0.3
221
Tumor
0.3
443
Tumor
0.3
445
Tumor
0.2
955
Tumor
0.2
383
Tumor
0.2
963
Tumor
0.2
353
Tumor
0.2
484
Normal
0.2
923
Tumor
0.2
534
Normal
0.2
517
Tumor
0.2
135
Tumor
0.2
868
Normal
0.2
473
Tumor
0.2
873
Tumor
0.2
697
Tumor
0.2
745
Tumor
0.2
983
Tumor
0.2
141
Tumor
0.2
924
Normal
0.2
851
Tumor
0.2
944
Normal
0.2
423
Tumor
0.2
714
Normal
0.2
737
Tumor
0.2
861
Tumor
0.2
313
Tumor
0.2
497
Tumor
0.2
823
Tumor
0.2
695
Tumor
0.1
635
Tumor
0.1
481
Tumor
0.1
977
Tumor
0.1
393
Tumor
0.1
1031
Tumor
0.1
563
Tumor
0.1
984
Normal
0.1
171
Tumor
0.1
1014
Normal
0.1
267
Tumor
0.1
123
Tumor
0.1
528
Normal
0.1
494
Normal
0.1
1025
Tumor
0.1
351
Tumor
0.1
526
Normal
0.1
425
Tumor
0.1
518
Normal
0.1
663
Tumor
0.1
436
Normal
0.1
421
Tumor
0.1
1013
Tumor
0.1
746
Normal
0.1
554
Normal
0.1
462
Normal
0.1
866
Normal
0.1
1032
Normal
0.1
488
Normal
0.1
786
Normal
0.1
857
Tumor
0.1
922
Normal
0.1
212
Normal
0.1
696
Normal
0.1
128
Normal
0.1
686
Normal
0.1
862
Normal
0.1
925
Tumor
0.1
912
Normal
0.1
415
Tumor
0.1
364
Normal
0.0
474
Normal
0.0
864
Normal
0.0
451
Tumor
0.0
648
Normal
0.0
466
Normal
0.0
713
Tumor
0.0
954
Normal
0.0
416
Normal
0.0
978
Normal
0.0
952
Normal
0.0
884
Normal
0.0
858
Normal
0.0
448
Normal
0.0
557
Tumor
0.0
756
Normal
0.0
715
Tumor
0.0
455
Tumor
0.0
738
Normal
0.0
916
Normal
0.0
472
Normal
0.0
172
Normal
0.0
356
Normal
0.0
778
Normal
0.0
716
Normal
0.0
514
Normal
0.0
363
Tumor
0.0
492
Normal
0.0
564
Normal
0.0
636
Normal
0.0
185
Tumor
0.0
938
Normal
0.0
913
Tumor
0.0
558
Normal
0.0
926
Normal
0.0
572
Normal
0.0
824
Normal
0.0
722
Normal
0.0
616
Normal
0.0
742
Normal
0.0
464
Normal
0.0
138
Normal
0.0
976
Normal
0.0
964
Normal
0.0
698
Normal
0.0
982
Normal
0.0
538
Normal
0.0
546
Normal
0.0
723
Tumor
0.0
516
Normal
0.0
278
Normal
0.0
874
Normal
0.0
136
Normal
0.0
1028
Normal
0.0
535
Tumor
0.0
628
Normal
0.0
728
Normal
0.0
412
Normal
-0.1
482
Normal
-0.1
918
Normal
-0.1
297
Tumor
-0.1
956
Normal
-0.1
286
Normal
-0.1
1026
Normal
-0.1
367
Tumor
-0.1
414
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
493
Tumor
-0.1
132
Normal
-0.1
222
Normal
-0.1
958
Normal
-0.1
114
Normal
-0.1
818
Normal
-0.1
344
Normal
-0.1
258
Normal
-0.1
285
Tumor
-0.1
618
Normal
-0.1
145
Tumor
-0.1
357
Tumor
-0.1
148
Normal
-0.1
878
Normal
-0.1
524
Normal
-0.1
142
Normal
-0.1
428
Normal
-0.1
1046
Normal
-0.1
341
Tumor
-0.1
424
Normal
-0.1
664
Normal
-0.1
882
Normal
-0.1
312
Normal
-0.1
284
Normal
-0.1
533
Tumor
-0.1
162
Normal
-0.1
394
Normal
-0.1
214
Normal
-0.1
1022
Normal
-0.1
432
Normal
-0.1
426
Normal
-0.1
228
Normal
-0.1
433
Tumor
-0.1
452
Normal
-0.1
446
Normal
-0.1
224
Normal
-0.1
1021
Tumor
-0.1
568
Normal
-0.1
354
Normal
-0.1
392
Normal
-0.1
262
Normal
-0.1
327
Tumor
-0.1
478
Normal
-0.1
968
Normal
-0.1
358
Normal
-0.1
721
Tumor
-0.1
268
Normal
-0.1
196
Normal
-0.1
362
Normal
-0.1
422
Normal
-0.1
376
Normal
-0.1
298
Normal
-0.1
1042
Normal
-0.1
813
Tumor
-0.1
342
Normal
-0.2
498
Normal
-0.2
724
Normal
-0.2
125
Tumor
-0.2
232
Normal
-0.2
966
Normal
-0.2
744
Normal
-0.2
124
Normal
-0.2
375
Tumor
-0.2
642
Normal
-0.2
852
Normal
-0.2
427
Tumor
-0.2
352
Normal
-0.2
468
Normal
-0.2
314
Normal
-0.2
146
Normal
-0.2
113
Tumor
-0.2
126
Normal
-0.2
386
Normal
-0.2
223
Tumor
-0.2
195
Tumor
-0.2
662
Normal
-0.2
666
Normal
-0.2
957
Tumor
-0.2
331
Tumor
-0.2
814
Normal
-0.2
368
Normal
-0.2
447
Tumor
-0.2
574
Normal
-0.2
456
Normal
-0.2
965
Tumor
-0.2
187
Tumor
-0.2
672
Normal
-0.2
434
Normal
-0.2
388
Normal
-0.2
816
Normal
-0.2
914
Normal
-0.2
355
Tumor
-0.2
1044
Normal
-0.2
213
Tumor
-0.2
975
Tumor
-0.2
384
Normal
-0.2
332
Normal
-0.2
218
Normal
-0.2
366
Normal
-0.2
186
Normal
-0.2
272
Normal
-0.3
396
Normal
-0.3
131
Tumor
-0.3
877
Tumor
-0.3
536
Normal
-0.3
527
Tumor
-0.3
817
Tumor
-0.3
395
Tumor
-0.3
188
Normal
-0.3
671
Tumor
-0.3
523
Tumor
-0.3
385
Tumor
-0.3
943
Tumor
-0.3
444
Normal
-0.3
391
Tumor
-0.4
617
Tumor
-0.4
192
Normal
-0.4
217
Tumor
-0.4
277
Tumor
-0.4
147
Tumor
-0.4
387
Tumor
-0.4
191
Tumor
-0.5
311
Tumor
-0.5
545
Tumor
-0.5
917
Tumor
-0.5
881
Tumor
-0.6
283
Tumor
-0.6
573
Tumor
-0.6
467
Tumor
-0.6
815
Tumor
-0.6
463
Tumor
-0.7
211
Tumor
-0.8
343
Tumor
-0.8
413
Tumor
-0.8
951
Tumor
-0.8
661
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
