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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
101.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
73.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
2.4
313
Tumor
2.4
745
Tumor
2.3
965
Tumor
1.6
537
Tumor
1.6
535
Tumor
1.5
1043
Tumor
1.5
343
Tumor
1.4
367
Tumor
1.4
227
Tumor
1.4
473
Tumor
1.3
357
Tumor
1.3
411
Tumor
1.3
257
Tumor
1.3
365
Tumor
1.3
355
Tumor
1.3
525
Tumor
1.1
517
Tumor
1.1
545
Tumor
1.0
957
Tumor
1.0
727
Tumor
1.0
445
Tumor
0.9
567
Tumor
0.8
483
Tumor
0.8
258
Normal
0.8
515
Tumor
0.8
527
Tumor
0.8
1044
Normal
0.7
953
Tumor
0.7
363
Tumor
0.7
685
Tumor
0.7
697
Tumor
0.7
491
Tumor
0.7
863
Tumor
0.6
967
Tumor
0.6
277
Tumor
0.6
187
Tumor
0.6
647
Tumor
0.6
536
Normal
0.5
447
Tumor
0.5
938
Normal
0.5
524
Normal
0.5
944
Normal
0.4
661
Tumor
0.4
954
Normal
0.4
956
Normal
0.4
231
Tumor
0.4
526
Normal
0.4
976
Normal
0.3
443
Tumor
0.3
557
Tumor
0.3
477
Tumor
0.3
268
Normal
0.3
394
Normal
0.3
391
Tumor
0.3
493
Tumor
0.2
568
Normal
0.2
943
Tumor
0.2
866
Normal
0.2
487
Tumor
0.2
435
Tumor
0.2
224
Normal
0.2
286
Normal
0.2
955
Tumor
0.2
573
Tumor
0.2
514
Normal
0.1
513
Tumor
0.1
356
Normal
0.1
951
Tumor
0.1
865
Tumor
0.1
686
Normal
0.1
314
Normal
0.1
864
Normal
0.1
396
Normal
0.1
311
Tumor
0.1
228
Normal
0.1
211
Tumor
0.0
285
Tumor
0.0
975
Tumor
0.0
478
Normal
0.0
436
Normal
0.0
518
Normal
0.0
188
Normal
0.0
861
Tumor
0.0
857
Tumor
0.0
395
Tumor
0.0
858
Normal
0.0
665
Tumor
0.0
375
Tumor
0.0
358
Normal
-0.1
695
Tumor
-0.1
262
Normal
-0.1
385
Tumor
-0.1
444
Normal
-0.1
937
Tumor
-0.1
387
Tumor
-0.1
331
Tumor
-0.1
271
Tumor
-0.1
312
Normal
-0.1
1046
Normal
-0.1
958
Normal
-0.1
516
Normal
-0.1
368
Normal
-0.1
852
Normal
-0.1
488
Normal
-0.1
484
Normal
-0.1
474
Normal
-0.1
851
Tumor
-0.1
1045
Tumor
-0.1
666
Normal
-0.1
952
Normal
-0.1
261
Tumor
-0.2
497
Tumor
-0.2
862
Normal
-0.2
354
Normal
-0.2
364
Normal
-0.2
498
Normal
-0.2
341
Tumor
-0.2
558
Normal
-0.2
383
Tumor
-0.2
523
Tumor
-0.2
267
Tumor
-0.2
172
Normal
-0.2
528
Normal
-0.2
366
Normal
-0.2
713
Tumor
-0.2
272
Normal
-0.2
147
Tumor
-0.2
574
Normal
-0.2
492
Normal
-0.2
412
Normal
-0.3
672
Normal
-0.3
384
Normal
-0.3
392
Normal
-0.3
278
Normal
-0.3
724
Normal
-0.3
696
Normal
-0.3
353
Tumor
-0.3
434
Normal
-0.3
232
Normal
-0.4
185
Tumor
-0.4
284
Normal
-0.4
728
Normal
-0.4
388
Normal
-0.4
554
Normal
-0.4
823
Tumor
-0.4
446
Normal
-0.4
553
Tumor
-0.4
351
Tumor
-0.4
344
Normal
-0.4
386
Normal
-0.4
571
Tumor
-0.4
572
Normal
-0.4
171
Tumor
-0.4
376
Normal
-0.5
212
Normal
-0.5
342
Normal
-0.5
818
Normal
-0.5
433
Tumor
-0.5
161
Tumor
-0.5
297
Tumor
-0.5
874
Normal
-0.5
223
Tumor
-0.5
148
Normal
-0.5
352
Normal
-0.5
868
Normal
-0.5
415
Tumor
-0.5
756
Normal
-0.5
448
Normal
-0.5
332
Normal
-0.6
716
Normal
-0.6
662
Normal
-0.6
564
Normal
-0.6
746
Normal
-0.6
471
Tumor
-0.6
533
Tumor
-0.7
328
Normal
-0.7
327
Tumor
-0.7
283
Tumor
-0.7
698
Normal
-0.7
963
Tumor
-0.7
538
Normal
-0.7
737
Tumor
-0.7
162
Normal
-0.7
817
Tumor
-0.8
563
Tumor
-0.8
298
Normal
-0.8
546
Normal
-0.8
721
Tumor
-0.8
873
Tumor
-0.8
671
Tumor
-0.8
431
Tumor
-0.8
416
Normal
-0.8
815
Tumor
-0.8
968
Normal
-0.8
648
Normal
-0.8
494
Normal
-0.8
964
Normal
-0.9
361
Tumor
-0.9
867
Tumor
-0.9
966
Normal
-1.0
186
Normal
-1.0
432
Normal
-1.0
813
Tumor
-1.0
534
Normal
-1.0
714
Normal
-1.0
816
Normal
-1.1
461
Tumor
-1.1
663
Tumor
-1.1
362
Normal
-1.1
785
Tumor
-1.1
755
Tumor
-1.2
722
Normal
-1.2
744
Normal
-1.2
824
Normal
-1.2
742
Normal
-1.2
723
Tumor
-1.2
778
Normal
-1.3
738
Normal
-1.3
482
Normal
-1.3
814
Normal
-1.3
472
Normal
-1.3
715
Tumor
-1.4
481
Tumor
-1.4
786
Normal
-1.5
743
Tumor
-1.5
777
Tumor
-1.5
664
Normal
-1.5
462
Normal
-1.6
741
Tumor
-1.8
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
