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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
47298.9
nTPM
HPA Brain:
25439.1
nTPM
GTEx:
47298.9
nTPM
Pig:
9712.7
nTPM
Mouse:
13467.8
nTPM
Allen mouse:
23.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25439.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 21094.9
2586
Male, age 75, left hemisphere
35658.1
2219
Male, age 76, both hemispheres
33305.5
2666
Male, age 74, left hemisphere
25846.4
2828
Female, age 72, unknown
23499.4
1833
Male, age 53, unknown
19009.6
1870
Female, age 42, unknown
18243.7
1830
Male, age 51, unknown
17306.0
2019
Male, age 18, unknown
16073.7
1827
Male, age 72, unknown
13071.0
2411
Female, age 72, unknown
8935.7
Dorsal raphe nucleus nTPM: 12603.1
1828
Male, age 53, unknown
18619.5
2047
Male, age 72, unknown
14263.5
2750
Male, age 76, both hemispheres
13378.1
2016
Female, age 72, unknown
11198.5
2298
Female, age 72, unknown
5556.1
Inferior colliculus nTPM: 17661.4
2849
Male, age 72, unknown
28422.8
1890
Male, age 53, unknown
19045.4
1848
Female, age 42, unknown
15500.7
2097
Female, age 72, unknown
7676.9
Median raphe nucleus nTPM: 24509.0
2220
Male, age 76, midline
24509.0
Periaquaductal grey, anterior nTPM: 12442.5
2502
Female, age 75, unknown
14882.8
1795
Male, age 51, unknown
12356.9
1947
Male, age 18, unknown
10087.7
Periaquaductal grey, dorsal nTPM: 16935.7
2850
Male, age 76, both hemispheres
27310.0
1831
Male, age 72, unknown
13972.8
2464
Female, age 72, unknown
13269.5
1840
Male, age 53, unknown
13190.5
Periaquaductal grey, lateral nTPM: 10072.3
2140
Male, age 76, both hemispheres
12794.7
2053
Male, age 18, unknown
11071.9
2272
Male, age 74, both hemispheres
6350.3
Pretectal area nTPM: 16738.7
1817
Female, age 42, unknown
24641.4
1944
Female, age 72, unknown
23007.7
1816
Male, age 51, unknown
22091.7
2667
Female, age 75, unknown
21881.0
1815
Male, age 53, unknown
20848.5
2007
Male, age 72, unknown
20615.0
2825
Male, age 18, unknown
15994.9
2407
Male, age 75, both hemispheres
12751.3
2224
Female, age 72, unknown
8457.6
2316
Male, age 76, right hemisphere
8214.2
2273
Male, age 74, both hemispheres
5622.7
Red nucleus nTPM: 18348.9
2584
Male, age 75, left hemisphere
25156.8
2588
Male, age 74, left hemisphere
22881.2
2503
Female, age 72, unknown
20909.2
2785
Male, age 18, unknown
20115.3
1865
Male, age 51, unknown
19180.9
1954
Female, age 42, unknown
19091.2
2823
Male, age 76, right hemisphere
17368.1
2227
Male, age 72, unknown
16327.1
2769
Male, age 72, unknown
15977.3
1904
Male, age 53, unknown
15752.2
2725
Female, age 75, unknown
13824.6
1821
Female, age 72, unknown
13602.8
Substantia nigra nTPM: 25439.1
2665
Male, age 74, both hemispheres
63370.7
2699
Male, age 18, unknown
31934.4
1916
Female, age 42, unknown
27264.2
2241
Male, age 72, unknown
21137.2
1941
Male, age 53, unknown
20851.8
1889
Female, age 72, unknown
20144.5
2583
Male, age 75, right hemisphere
20022.3
1851
Male, age 51, unknown
18704.8
2409
Female, age 72, unknown
16072.2
2590
Female, age 75, unknown
14888.8
Superior colliculus nTPM: 16437.4
2664
Male, age 75, both hemispheres
28973.4
2087
Female, age 72, unknown
19682.9
2668
Female, age 75, unknown
18324.5
2587
Male, age 74, left hemisphere
18040.3
1895
Male, age 76, right hemisphere
14373.1
1839
Male, age 51, unknown
13728.3
1913
Female, age 42, unknown
13693.1
1995
Male, age 72, unknown
12569.9
2261
Male, age 18, unknown
12562.5
1796
Male, age 53, unknown
12426.1
Ventral tegmental area nTPM: 18089.8
2218
Male, age 76, both hemispheres
25560.9
2223
Female, age 72, unknown
19439.6
1942
Male, age 51, unknown
18282.3
1915
Female, age 42, unknown
16091.0
2410
Female, age 72, unknown
15431.2
2021
Male, age 53, unknown
13733.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47298.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 47298.9
Samples: 139
Max nTPM: 168619.6
Min nTPM: 6018.0
Std nTPM: 32464.9
Median nTPM: 34918.2
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13467.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13467.8
Samples: 4
Max nTPM: 14214.2
Min nTPM: 12873.5
Sample A
Male
14214.2
Sample B
Male
13358.2
Sample C
Female
13425.2
Sample D
Female
12873.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
