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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LPA is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
56.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
231
Samples
Sample
Description
TPM
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
554
Normal
0.9
777
Tumor
0.8
353
Tumor
0.8
162
Normal
0.8
136
Normal
0.8
538
Normal
0.8
877
Tumor
0.8
952
Normal
0.8
666
Normal
0.7
414
Normal
0.7
141
Tumor
0.7
342
Normal
0.7
648
Normal
0.7
392
Normal
0.7
422
Normal
0.7
746
Normal
0.7
686
Normal
0.7
146
Normal
0.6
662
Normal
0.6
138
Normal
0.6
778
Normal
0.6
938
Normal
0.6
452
Normal
0.5
955
Tumor
0.5
463
Tumor
0.5
142
Normal
0.5
642
Normal
0.5
742
Normal
0.5
111
Normal
0.5
132
Normal
0.5
343
Tumor
0.5
277
Tumor
0.5
824
Normal
0.5
391
Tumor
0.5
172
Normal
0.5
388
Normal
0.5
618
Normal
0.4
497
Tumor
0.4
564
Normal
0.4
514
Normal
0.4
186
Normal
0.4
124
Normal
0.4
878
Normal
0.4
368
Normal
0.4
744
Normal
0.4
286
Normal
0.4
698
Normal
0.4
534
Normal
0.4
217
Tumor
0.4
1026
Normal
0.3
258
Normal
0.3
968
Normal
0.3
196
Normal
0.3
396
Normal
0.3
722
Normal
0.3
355
Tumor
0.3
386
Normal
0.3
636
Normal
0.3
862
Normal
0.3
137
Tumor
0.3
214
Normal
0.3
223
Tumor
0.3
574
Normal
0.3
944
Normal
0.3
352
Normal
0.3
954
Normal
0.3
298
Normal
0.3
958
Normal
0.3
628
Normal
0.3
663
Tumor
0.3
412
Normal
0.3
192
Normal
0.3
462
Normal
0.3
425
Tumor
0.3
344
Normal
0.3
466
Normal
0.3
868
Normal
0.3
135
Tumor
0.3
218
Normal
0.3
696
Normal
0.2
616
Normal
0.2
491
Tumor
0.2
432
Normal
0.2
456
Normal
0.2
926
Normal
0.2
518
Normal
0.2
863
Tumor
0.2
232
Normal
0.2
354
Normal
0.2
568
Normal
0.2
128
Normal
0.2
858
Normal
0.2
982
Normal
0.2
976
Normal
0.2
356
Normal
0.2
436
Normal
0.2
314
Normal
0.2
148
Normal
0.2
864
Normal
0.2
444
Normal
0.2
394
Normal
0.2
874
Normal
0.2
882
Normal
0.2
738
Normal
0.2
114
Normal
0.2
884
Normal
0.2
818
Normal
0.2
426
Normal
0.2
228
Normal
0.2
572
Normal
0.2
341
Tumor
0.2
492
Normal
0.2
956
Normal
0.2
424
Normal
0.2
474
Normal
0.2
227
Tumor
0.2
468
Normal
0.1
448
Normal
0.1
546
Normal
0.1
865
Tumor
0.1
866
Normal
0.1
376
Normal
0.1
756
Normal
0.1
278
Normal
0.1
498
Normal
0.1
615
Tumor
0.1
852
Normal
0.1
664
Normal
0.1
428
Normal
0.1
728
Normal
0.1
964
Normal
0.1
363
Tumor
0.1
714
Normal
0.1
647
Tumor
0.1
924
Normal
0.1
1045
Tumor
0.1
328
Normal
0.1
488
Normal
0.1
713
Tumor
0.1
145
Tumor
0.1
195
Tumor
0.1
364
Normal
0.1
984
Normal
0.1
911
Tumor
0.1
358
Normal
0.1
723
Tumor
0.0
447
Tumor
0.0
423
Tumor
0.0
384
Normal
0.0
421
Tumor
0.0
464
Normal
0.0
222
Normal
0.0
494
Normal
0.0
816
Normal
0.0
461
Tumor
0.0
1016
Normal
0.0
366
Normal
0.0
446
Normal
0.0
313
Tumor
0.0
431
Tumor
0.0
815
Tumor
0.0
224
Normal
0.0
1046
Normal
0.0
922
Normal
0.0
558
Normal
0.0
331
Tumor
0.0
967
Tumor
0.0
914
Normal
0.0
472
Normal
0.0
918
Normal
0.0
823
Tumor
0.0
484
Normal
-0.1
385
Tumor
-0.1
185
Tumor
-0.1
1014
Normal
-0.1
272
Normal
-0.1
553
Tumor
-0.1
1022
Normal
-0.1
671
Tumor
-0.1
528
Normal
-0.1
332
Normal
-0.1
912
Normal
-0.1
975
Tumor
-0.1
267
Tumor
-0.1
126
Normal
-0.1
387
Tumor
-0.1
883
Tumor
-0.1
526
Normal
-0.1
672
Normal
-0.1
445
Tumor
-0.1
312
Normal
-0.1
1028
Normal
-0.1
741
Tumor
-0.1
487
Tumor
-0.1
563
Tumor
-0.1
857
Tumor
-0.1
627
Tumor
-0.1
297
Tumor
-0.1
284
Normal
-0.1
695
Tumor
-0.2
268
Normal
-0.2
881
Tumor
-0.2
434
Normal
-0.2
125
Tumor
-0.2
916
Normal
-0.2
513
Tumor
-0.2
212
Normal
-0.2
435
Tumor
-0.2
515
Tumor
-0.2
367
Tumor
-0.2
478
Normal
-0.2
536
Normal
-0.2
113
Tumor
-0.2
721
Tumor
-0.3
966
Normal
-0.3
617
Tumor
-0.3
571
Tumor
-0.3
161
Tumor
-0.3
786
Normal
-0.3
697
Tumor
-0.3
112
Tumor
-0.3
482
Normal
-0.3
516
Normal
-0.3
365
Tumor
-0.3
524
Normal
-0.3
395
Tumor
-0.3
983
Tumor
-0.3
147
Tumor
-0.3
465
Tumor
-0.3
921
Tumor
-0.3
327
Tumor
-0.3
517
Tumor
-0.3
443
Tumor
-0.3
545
Tumor
-0.3
131
Tumor
-0.3
1042
Normal
-0.3
221
Tumor
-0.3
262
Normal
-0.3
271
Tumor
-0.3
311
Tumor
-0.4
867
Tumor
-0.4
873
Tumor
-0.4
188
Normal
-0.4
737
Tumor
-0.4
573
Tumor
-0.4
433
Tumor
-0.4
785
Tumor
-0.4
567
Tumor
-0.4
917
Tumor
-0.4
375
Tumor
-0.4
745
Tumor
-0.4
191
Tumor
-0.4
361
Tumor
-0.4
861
Tumor
-0.4
411
Tumor
-0.4
943
Tumor
-0.4
362
Normal
-0.4
451
Tumor
-0.5
665
Tumor
-0.5
416
Normal
-0.5
1032
Normal
-0.5
383
Tumor
-0.5
716
Normal
-0.5
527
Tumor
-0.5
1044
Normal
-0.5
813
Tumor
-0.5
393
Tumor
-0.5
351
Tumor
-0.5
913
Tumor
-0.5
213
Tumor
-0.5
127
Tumor
-0.5
817
Tumor
-0.5
685
Tumor
-0.5
925
Tumor
-0.5
413
Tumor
-0.5
915
Tumor
-0.5
814
Normal
-0.5
635
Tumor
-0.5
1015
Tumor
-0.5
557
Tumor
-0.5
951
Tumor
-0.5
963
Tumor
-0.6
981
Tumor
-0.6
455
Tumor
-0.6
123
Tumor
-0.6
851
Tumor
-0.6
261
Tumor
-0.6
415
Tumor
-0.6
1043
Tumor
-0.6
977
Tumor
-0.6
641
Tumor
-0.6
755
Tumor
-0.6
1025
Tumor
-0.7
283
Tumor
-0.7
953
Tumor
-0.7
743
Tumor
-0.7
467
Tumor
-0.7
523
Tumor
-0.7
357
Tumor
-0.7
727
Tumor
-0.7
481
Tumor
-0.7
978
Normal
-0.7
187
Tumor
-0.7
473
Tumor
-0.7
427
Tumor
-0.8
257
Tumor
-0.8
483
Tumor
-0.8
923
Tumor
-0.8
1021
Tumor
-0.8
477
Tumor
-0.8
285
Tumor
-0.8
715
Tumor
-0.8
493
Tumor
-0.8
1041
Tumor
-0.8
171
Tumor
-0.8
535
Tumor
-0.8
724
Normal
-0.8
231
Tumor
-0.8
1013
Tumor
-0.9
1027
Tumor
-0.9
661
Tumor
-0.9
525
Tumor
-0.9
471
Tumor
-1.0
1031
Tumor
-1.0
937
Tumor
-1.0
533
Tumor
-1.0
537
Tumor
-1.1
965
Tumor
-1.2
211
Tumor
-1.5
957
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
