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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK39 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
74.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK39 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.5
491
Tumor
1.1
957
Tumor
0.9
125
Tumor
0.9
953
Tumor
0.9
1021
Tumor
0.9
977
Tumor
0.9
685
Tumor
0.8
425
Tumor
0.8
963
Tumor
0.8
881
Tumor
0.8
135
Tumor
0.8
375
Tumor
0.8
537
Tumor
0.7
313
Tumor
0.7
455
Tumor
0.7
171
Tumor
0.7
283
Tumor
0.6
421
Tumor
0.6
777
Tumor
0.6
311
Tumor
0.6
161
Tumor
0.6
975
Tumor
0.6
724
Normal
0.6
131
Tumor
0.6
745
Tumor
0.6
257
Tumor
0.5
917
Tumor
0.5
715
Tumor
0.5
925
Tumor
0.5
525
Tumor
0.5
921
Tumor
0.4
395
Tumor
0.4
817
Tumor
0.4
877
Tumor
0.4
943
Tumor
0.4
443
Tumor
0.4
517
Tumor
0.4
671
Tumor
0.4
285
Tumor
0.4
427
Tumor
0.4
213
Tumor
0.4
387
Tumor
0.4
523
Tumor
0.4
471
Tumor
0.4
351
Tumor
0.3
463
Tumor
0.3
431
Tumor
0.3
883
Tumor
0.3
573
Tumor
0.3
661
Tumor
0.3
743
Tumor
0.3
211
Tumor
0.3
147
Tumor
0.2
617
Tumor
0.2
1013
Tumor
0.2
861
Tumor
0.2
385
Tumor
0.2
343
Tumor
0.2
665
Tumor
0.2
755
Tumor
0.2
434
Normal
0.2
341
Tumor
0.2
1045
Tumor
0.2
492
Normal
0.2
461
Tumor
0.2
1043
Tumor
0.2
297
Tumor
0.2
451
Tumor
0.1
188
Normal
0.1
185
Tumor
0.1
353
Tumor
0.1
563
Tumor
0.1
815
Tumor
0.1
217
Tumor
0.1
467
Tumor
0.1
355
Tumor
0.1
447
Tumor
0.1
527
Tumor
0.1
191
Tumor
0.1
865
Tumor
0.1
721
Tumor
0.1
857
Tumor
0.1
145
Tumor
0.1
1041
Tumor
0.1
124
Normal
0.1
221
Tumor
0.0
383
Tumor
0.0
951
Tumor
0.0
127
Tumor
0.0
231
Tumor
0.0
435
Tumor
0.0
814
Normal
0.0
535
Tumor
0.0
477
Tumor
0.0
916
Normal
0.0
911
Tumor
0.0
915
Tumor
0.0
478
Normal
0.0
545
Tumor
0.0
146
Normal
0.0
816
Normal
0.0
126
Normal
0.0
367
Tumor
0.0
473
Tumor
0.0
172
Normal
-0.1
966
Normal
-0.1
223
Tumor
-0.1
344
Normal
-0.1
331
Tumor
-0.1
271
Tumor
-0.1
141
Tumor
-0.1
557
Tumor
-0.1
261
Tumor
-0.1
1031
Tumor
-0.1
114
Normal
-0.1
192
Normal
-0.1
956
Normal
-0.1
228
Normal
-0.1
224
Normal
-0.1
662
Normal
-0.1
851
Tumor
-0.1
424
Normal
-0.1
516
Normal
-0.1
874
Normal
-0.1
663
Tumor
-0.1
462
Normal
-0.1
358
Normal
-0.1
432
Normal
-0.1
128
Normal
-0.1
286
Normal
-0.1
698
Normal
-0.1
444
Normal
-0.1
536
Normal
-0.1
967
Tumor
-0.1
641
Tumor
-0.2
138
Normal
-0.2
813
Tumor
-0.2
1016
Normal
-0.2
666
Normal
-0.2
278
Normal
-0.2
363
Tumor
-0.2
362
Normal
-0.2
386
Normal
-0.2
524
Normal
-0.2
635
Tumor
-0.2
212
Normal
-0.2
186
Normal
-0.2
498
Normal
-0.2
538
Normal
-0.2
366
Normal
-0.2
284
Normal
-0.2
113
Tumor
-0.2
918
Normal
-0.2
268
Normal
-0.2
823
Tumor
-0.2
852
Normal
-0.2
137
Tumor
-0.2
415
Tumor
-0.2
926
Normal
-0.2
272
Normal
-0.2
924
Normal
-0.2
342
Normal
-0.2
227
Tumor
-0.2
413
Tumor
-0.2
664
Normal
-0.2
436
Normal
-0.2
493
Tumor
-0.2
214
Normal
-0.2
414
Normal
-0.2
744
Normal
-0.2
136
Normal
-0.2
448
Normal
-0.2
411
Tumor
-0.2
148
Normal
-0.2
914
Normal
-0.2
262
Normal
-0.2
328
Normal
-0.2
368
Normal
-0.2
858
Normal
-0.2
738
Normal
-0.2
422
Normal
-0.2
162
Normal
-0.2
741
Tumor
-0.2
474
Normal
-0.2
728
Normal
-0.2
672
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.3
922
Normal
-0.3
923
Tumor
-0.3
142
Normal
-0.3
1022
Normal
-0.3
518
Normal
-0.3
472
Normal
-0.3
982
Normal
-0.3
713
Tumor
-0.3
697
Tumor
-0.3
352
Normal
-0.3
277
Tumor
-0.3
864
Normal
-0.3
824
Normal
-0.3
686
Normal
-0.3
976
Normal
-0.3
1044
Normal
-0.3
494
Normal
-0.3
376
Normal
-0.3
132
Normal
-0.3
312
Normal
-0.3
446
Normal
-0.3
364
Normal
-0.3
952
Normal
-0.3
384
Normal
-0.3
361
Tumor
-0.3
818
Normal
-0.3
111
Normal
-0.3
433
Tumor
-0.3
412
Normal
-0.3
187
Tumor
-0.3
716
Normal
-0.3
528
Normal
-0.3
954
Normal
-0.3
978
Normal
-0.3
396
Normal
-0.3
483
Tumor
-0.3
468
Normal
-0.3
357
Tumor
-0.3
416
Normal
-0.3
428
Normal
-0.3
648
Normal
-0.3
867
Tumor
-0.3
488
Normal
-0.3
391
Tumor
-0.3
298
Normal
-0.3
426
Normal
-0.3
568
Normal
-0.3
882
Normal
-0.3
534
Normal
-0.3
546
Normal
-0.3
756
Normal
-0.4
727
Tumor
-0.4
356
Normal
-0.4
365
Tumor
-0.4
218
Normal
-0.4
778
Normal
-0.4
394
Normal
-0.4
354
Normal
-0.4
574
Normal
-0.4
484
Normal
-0.4
482
Normal
-0.4
878
Normal
-0.4
456
Normal
-0.4
873
Tumor
-0.4
487
Tumor
-0.4
195
Tumor
-0.4
866
Normal
-0.4
466
Normal
-0.4
1042
Normal
-0.4
1032
Normal
-0.4
314
Normal
-0.4
746
Normal
-0.4
1046
Normal
-0.4
1026
Normal
-0.4
1015
Tumor
-0.4
392
Normal
-0.4
1027
Tumor
-0.4
112
Tumor
-0.4
722
Normal
-0.4
332
Normal
-0.4
513
Tumor
-0.4
642
Normal
-0.4
981
Tumor
-0.4
452
Normal
-0.4
786
Normal
-0.4
983
Tumor
-0.5
554
Normal
-0.5
196
Normal
-0.5
742
Normal
-0.5
423
Tumor
-0.5
737
Tumor
-0.5
388
Normal
-0.5
944
Normal
-0.5
267
Tumor
-0.5
868
Normal
-0.5
618
Normal
-0.5
862
Normal
-0.5
481
Tumor
-0.5
968
Normal
-0.5
863
Tumor
-0.5
955
Tumor
-0.5
984
Normal
-0.5
647
Tumor
-0.5
327
Tumor
-0.5
533
Tumor
-0.5
526
Normal
-0.5
616
Normal
-0.5
723
Tumor
-0.5
913
Tumor
-0.5
714
Normal
-0.6
515
Tumor
-0.6
564
Normal
-0.6
222
Normal
-0.6
514
Normal
-0.6
1014
Normal
-0.6
938
Normal
-0.6
884
Normal
-0.6
696
Normal
-0.6
464
Normal
-0.6
558
Normal
-0.6
958
Normal
-0.6
636
Normal
-0.6
258
Normal
-0.6
627
Tumor
-0.6
232
Normal
-0.7
393
Tumor
-0.7
572
Normal
-0.7
964
Normal
-0.7
912
Normal
-0.7
123
Tumor
-0.7
497
Tumor
-0.7
965
Tumor
-0.7
445
Tumor
-0.7
615
Tumor
-0.8
785
Tumor
-0.8
553
Tumor
-0.8
571
Tumor
-0.8
465
Tumor
-0.8
1025
Tumor
-0.8
695
Tumor
-0.9
937
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
