MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:75.0 nTPM
GTEx:16.7 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:121.7 nTPM
Mouse:59.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
2019 Male, age 18, unknown 87.1
2666 Male, age 74, left hemisphere 63.6
2411 Female, age 72, unknown 58.8
1830 Male, age 51, unknown 58.1
2219 Male, age 76, both hemispheres 57.9
1833 Male, age 53, unknown 57.2
1870 Female, age 42, unknown 55.3
2586 Male, age 75, left hemisphere 52.5
2828 Female, age 72, unknown 47.9
1827 Male, age 72, unknown 45.3
Dorsal raphe nucleus
nTPM: 48.0
2750 Male, age 76, both hemispheres 61.6
1828 Male, age 53, unknown 56.5
2047 Male, age 72, unknown 46.1
2016 Female, age 72, unknown 38.5
2298 Female, age 72, unknown 37.3
Inferior colliculus
nTPM: 48.1
1890 Male, age 53, unknown 51.8
2849 Male, age 72, unknown 47.4
2097 Female, age 72, unknown 46.8
1848 Female, age 42, unknown 46.3
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Periaquaductal grey, anterior
nTPM: 42.7
2502 Female, age 75, unknown 54.2
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 39.1
1831 Male, age 72, unknown 47.5
2464 Female, age 72, unknown 42.3
1840 Male, age 53, unknown 33.6
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 34.6
2053 Male, age 18, unknown 40.6
2272 Male, age 74, both hemispheres 35.2
2140 Male, age 76, both hemispheres 28.0
Pretectal area
nTPM: 55.2
1817 Female, age 42, unknown 77.7
1944 Female, age 72, unknown 75.6
2007 Male, age 72, unknown 71.3
1816 Male, age 51, unknown 66.8
1815 Male, age 53, unknown 64.8
2667 Female, age 75, unknown 47.6
2407 Male, age 75, both hemispheres 47.4
2316 Male, age 76, right hemisphere 42.0
2825 Male, age 18, unknown 38.8
2224 Female, age 72, unknown 38.7
2273 Male, age 74, both hemispheres 36.5
Red nucleus
nTPM: 75.0
1821 Female, age 72, unknown 97.8
1865 Male, age 51, unknown 83.1
2785 Male, age 18, unknown 82.1
1904 Male, age 53, unknown 80.6
2823 Male, age 76, right hemisphere 77.3
1954 Female, age 42, unknown 74.9
2503 Female, age 72, unknown 72.8
2588 Male, age 74, left hemisphere 72.3
2769 Male, age 72, unknown 70.8
2227 Male, age 72, unknown 68.3
2725 Female, age 75, unknown 64.4
2584 Male, age 75, left hemisphere 55.1
Substantia nigra
nTPM: 66.0
2409 Female, age 72, unknown 80.1
1941 Male, age 53, unknown 78.6
1916 Female, age 42, unknown 74.6
1889 Female, age 72, unknown 74.4
1851 Male, age 51, unknown 68.2
2665 Male, age 74, both hemispheres 62.6
2583 Male, age 75, right hemisphere 59.1
2699 Male, age 18, unknown 57.5
2241 Male, age 72, unknown 56.4
2590 Female, age 75, unknown 48.7
Superior colliculus
nTPM: 55.5
2668 Female, age 75, unknown 72.6
2587 Male, age 74, left hemisphere 66.0
1895 Male, age 76, right hemisphere 62.1
1913 Female, age 42, unknown 61.2
2087 Female, age 72, unknown 60.8
1995 Male, age 72, unknown 57.2
1839 Male, age 51, unknown 47.8
2261 Male, age 18, unknown 47.3
1796 Male, age 53, unknown 40.4
2664 Male, age 75, both hemispheres 39.6
Ventral tegmental area
nTPM: 54.8
2410 Female, age 72, unknown 62.7
2223 Female, age 72, unknown 62.6
2218 Male, age 76, both hemispheres 58.2
1915 Female, age 42, unknown 56.7
1942 Male, age 51, unknown 48.1
2021 Male, age 53, unknown 40.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 44.7
Min nTPM: 3.2
Std nTPM: 7.9
Median nTPM: 14.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 39.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 33.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 31.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 31.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 31.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 121.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 102.0
Samples: 4

Max nTPM: 125.1
Min nTPM: 74.3
Sample A Female 112.1
Sample B Female 74.3
Sample C Male 96.6
Sample D Male 125.1
Midbrain
nTPM: 121.4
Samples: 4

Max nTPM: 182.1
Min nTPM: 85.2
Sample A Female 182.1
Sample B Female 104.7
Sample C Male 113.6
Sample D Male 85.2
Periaqueductal gray
nTPM: 81.0
Samples: 3

Max nTPM: 89.3
Min nTPM: 73.4
Sample B Female 89.3
Sample C Male 73.4
Sample D Male 80.4
Superior colliculi
nTPM: 121.8
Samples: 4

Max nTPM: 161.4
Min nTPM: 104.1
Sample A Female 110.4
Sample B Female 104.1
Sample C Male 161.4
Sample D Male 111.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.5
Samples: 4

Max nTPM: 61.2
Min nTPM: 57.6
Sample A Male 57.6
Sample B Male 61.2
Sample C Female 61.1
Sample D Female 58.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68911013 Antisense, RP_050203_02_E12, Mouse strain C57BL/6J (56 days, male) 1.4

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