MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.9 nTPM
HPA Brain:44.5 nTPM
GTEx:49.9 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:0.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
2666 Male, age 74, left hemisphere 52.3
2586 Male, age 75, left hemisphere 46.5
2828 Female, age 72, unknown 41.8
2019 Male, age 18, unknown 39.6
1827 Male, age 72, unknown 39.3
1870 Female, age 42, unknown 39.2
1833 Male, age 53, unknown 37.8
2411 Female, age 72, unknown 37.5
1830 Male, age 51, unknown 37.4
2219 Male, age 76, both hemispheres 27.7
Dorsal raphe nucleus
nTPM: 34.1
1828 Male, age 53, unknown 36.1
2750 Male, age 76, both hemispheres 35.1
2016 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 34.6
2298 Female, age 72, unknown 29.9
Inferior colliculus
nTPM: 33.7
2849 Male, age 72, unknown 36.6
1890 Male, age 53, unknown 35.6
1848 Female, age 42, unknown 33.0
2097 Female, age 72, unknown 29.7
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Periaquaductal grey, anterior
nTPM: 40.7
1947 Male, age 18, unknown 43.2
2502 Female, age 75, unknown 39.9
1795 Male, age 51, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 37.5
2850 Male, age 76, both hemispheres 44.5
1831 Male, age 72, unknown 39.8
2464 Female, age 72, unknown 34.0
1840 Male, age 53, unknown 31.8
Periaquaductal grey, lateral
nTPM: 36.3
2140 Male, age 76, both hemispheres 42.9
2053 Male, age 18, unknown 36.7
2272 Male, age 74, both hemispheres 29.2
Pretectal area
nTPM: 37.5
1816 Male, age 51, unknown 42.9
2007 Male, age 72, unknown 42.3
1815 Male, age 53, unknown 41.2
1817 Female, age 42, unknown 40.8
2407 Male, age 75, both hemispheres 40.2
1944 Female, age 72, unknown 37.9
2825 Male, age 18, unknown 37.6
2316 Male, age 76, right hemisphere 36.7
2224 Female, age 72, unknown 32.0
2273 Male, age 74, both hemispheres 30.2
2667 Female, age 75, unknown 30.2
Red nucleus
nTPM: 44.5
2588 Male, age 74, left hemisphere 60.8
2725 Female, age 75, unknown 51.2
2503 Female, age 72, unknown 50.0
1865 Male, age 51, unknown 46.8
1904 Male, age 53, unknown 44.9
1821 Female, age 72, unknown 42.3
1954 Female, age 42, unknown 41.3
2769 Male, age 72, unknown 40.1
2823 Male, age 76, right hemisphere 40.0
2584 Male, age 75, left hemisphere 39.4
2785 Male, age 18, unknown 39.2
2227 Male, age 72, unknown 38.5
Substantia nigra
nTPM: 40.1
2665 Male, age 74, both hemispheres 47.0
2699 Male, age 18, unknown 41.6
2590 Female, age 75, unknown 41.4
1851 Male, age 51, unknown 40.8
1916 Female, age 42, unknown 40.6
2583 Male, age 75, right hemisphere 40.2
1941 Male, age 53, unknown 39.5
1889 Female, age 72, unknown 37.4
2241 Male, age 72, unknown 36.1
2409 Female, age 72, unknown 36.1
Superior colliculus
nTPM: 38.1
2587 Male, age 74, left hemisphere 43.6
2664 Male, age 75, both hemispheres 41.7
1995 Male, age 72, unknown 39.6
2668 Female, age 75, unknown 39.6
1913 Female, age 42, unknown 37.9
2261 Male, age 18, unknown 37.3
1796 Male, age 53, unknown 36.2
1839 Male, age 51, unknown 36.2
2087 Female, age 72, unknown 35.7
1895 Male, age 76, right hemisphere 33.2
Ventral tegmental area
nTPM: 37.2
2410 Female, age 72, unknown 39.6
2021 Male, age 53, unknown 38.0
2218 Male, age 76, both hemispheres 38.0
1915 Female, age 42, unknown 36.8
2223 Female, age 72, unknown 36.5
1942 Male, age 51, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.9
Samples: 139

Max nTPM: 106.6
Min nTPM: 25.3
Std nTPM: 18.9
Median nTPM: 44.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 106.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 103.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 103.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 95.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 93.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 89.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 87.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 85.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.9
FF:10158-103A5 76 years, female 54.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 35.5
Min nTPM: 15.0
Sample A Female 35.5
Sample B Female 19.4
Sample C Male 33.3
Sample D Male 15.0
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 22.5
Sample A Female 22.9
Sample B Female 24.9
Sample C Male 25.6
Sample D Male 22.5
Periaqueductal gray
nTPM: 25.8
Samples: 3

Max nTPM: 29.5
Min nTPM: 22.6
Sample B Female 22.6
Sample C Male 29.5
Sample D Male 25.4
Superior colliculi
nTPM: 23.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.9
Sample A Female 25.5
Sample B Female 20.9
Sample C Male 22.7
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.7
Sample A Male 16.2
Sample B Male 14.6
Sample C Female 13.7
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75828199 Antisense, RP_060601_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3
69116423 Antisense, RP_050317_02_F05, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.3
75828199 Antisense, RP_060601_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3
69116423 Antisense, RP_050317_02_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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