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CARD11
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                                        TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
                                        ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                        ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                        ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                        SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                        ANTIBODIES
                                        AND
                                        VALIDATION
                                        Dictionary
                                        Small intestine
                                        Tissue proteome
                                        Intestine
                                        SMALL INTESTINE - Expression summary
                                        Protein expression
                                        Small intestinei

                                        On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                        Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                        If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                        h
                                        m
                                        l
                                        n
                                        Glandular cells: Not detected
                                        RNA expressioni

                                        A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                        The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                        Scroll down to view mRNA expression data in more detail.
                                        Consensus:17.8 nTPM
                                        HPA:5.2 nTPM
                                        GTEx:17.8 nTPM
                                        FANTOM5:7.7 Scaled Tags Per Million

                                        SMALL INTESTINE - Antibody stainingi

                                        Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                        Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                        Antibody HPA052984
                                        Glandular cells Low



                                        SMALL INTESTINE - HPA RNA-seqi

                                        The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                        Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
                                        Average nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        5.2
                                        overview
                                        Male, age 65
                                        Small intestine sample 232
                                        nTPM: 6.7
                                        Cell types%
                                        Glandular cells:
                                        55

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        40

                                        overview
                                        Male, age 39
                                        Small intestine sample 233
                                        nTPM: 6.5
                                        Cell types%
                                        Glandular cells:
                                        40

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        55

                                        overview
                                        Male, age 68
                                        Small intestine sample 234
                                        nTPM: 5.3
                                        Cell types%
                                        Glandular cells:
                                        30

                                        Smooth muscle cells:
                                        15

                                        Other cell types:
                                        55

                                        N/A
                                        Male, age 85
                                        Small intestine sample 235
                                        nTPM: 2.3

                                        SMALL INTESTINE - GTEx RNA-seqi

                                        RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                        Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                        Max subtype nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        17.8
                                        GTEx sample id Sample description nTPM
                                        3.48.931.40.170.8010203040506070
                                        3.48.931.40.170.8010203040506070
                                        Small Intestine - Terminal Ileum
                                        Average nTPM: 17.8
                                        Samples: 187

                                        Max nTPM: 70.8
                                        Min nTPM: 0.1
                                        Std nTPM: 17.9
                                        Median nTPM: 8.9
                                        GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 70.8
                                        GTEX-183FY-1626-SM-793D8 20-29 years, male 69.7
                                        GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 67.1
                                        GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 61.1
                                        GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 58.0
                                        GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 57.1
                                        GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 56.5
                                        GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 54.8
                                        GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 54.0
                                        GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 53.2
                                        GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 52.8
                                        GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 52.4
                                        GTEX-16A39-1426-SM-6LLI6 30-39 years, female 51.8
                                        GTEX-11TUW-1926-SM-5BC58 60-69 years, male 51.4
                                        GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 48.0
                                        GTEX-13O61-1326-SM-5KM31 60-69 years, male 47.2
                                        GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 46.2
                                        GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 45.7
                                        GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 44.7
                                        GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 43.0
                                        GTEX-14PK6-1626-SM-6871I 70-79 years, female 42.7
                                        GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 42.5
                                        GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 42.4
                                        GTEX-X15G-1426-SM-4PQZK 50-59 years, female 41.9
                                        GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 41.8
                                        GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 41.6
                                        GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 41.6
                                        GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 39.9
                                        GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 39.7
                                        GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 39.5
                                        GTEX-11P82-0826-SM-5P9GU 20-29 years, male 38.6
                                        GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 37.9
                                        GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 37.2
                                        GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 37.1
                                        GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 37.0
                                        GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 36.8
                                        GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 36.7
                                        GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 36.7
                                        GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 36.7
                                        GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 35.0
                                        GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 34.8
                                        GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 34.4
                                        GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 34.2
                                        GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 31.7
                                        GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 31.7
                                        GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 31.7
                                        GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 31.4
                                        GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 31.3
                                        GTEX-1C475-1426-SM-793CH 40-49 years, female 31.2
                                        GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 30.3
                                        GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 29.6
                                        GTEX-131XG-1726-SM-5LZUR 50-59 years, female 28.9
                                        GTEX-17HHE-1726-SM-79OKT 50-59 years, male 28.9
                                        GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 28.6
                                        GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 28.1
                                        GTEX-1399S-2026-SM-5KM4B 30-39 years, female 27.7
                                        GTEX-14PKU-1626-SM-6871C 40-49 years, female 25.9
                                        GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 25.8
                                        GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 24.7
                                        GTEX-11I78-1126-SM-5A5K5 50-59 years, female 23.7
                                        GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 23.2
                                        GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 23.0
                                        GTEX-11DXX-1626-SM-5H11H 60-69 years, female 22.6
                                        GTEX-1497J-1926-SM-5TDCC 60-69 years, male 22.5
                                        GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 21.7
                                        GTEX-145ME-0926-SM-5O9AR 40-49 years, female 21.5
                                        GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 20.4
                                        GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 20.2
                                        GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 19.3
                                        GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 19.0
                                        GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 17.7
                                        GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 17.4
                                        GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 17.3
                                        GTEX-11P7K-1626-SM-5GU63 30-39 years, male 17.2
                                        GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 16.8
                                        GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 16.4
                                        GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 16.1
                                        GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 14.4
                                        GTEX-139T6-1026-SM-5IJGC 50-59 years, male 14.3
                                        GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 14.1
                                        GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 14.0
                                        GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 13.9
                                        GTEX-11EQ9-1326-SM-5985X 30-39 years, male 13.1
                                        GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 12.6
                                        GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 12.4
                                        GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 11.2
                                        GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 10.9
                                        GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 10.2
                                        GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 9.9
                                        GTEX-1399R-2026-SM-5K7WN 30-39 years, male 9.5
                                        GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 9.3
                                        GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 9.2
                                        GTEX-14PJN-0826-SM-686ZL 30-39 years, male 9.0
                                        GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 8.9
                                        GTEX-Y114-1426-SM-4TT6W 50-59 years, female 8.5
                                        GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 8.4
                                        GTEX-144GM-1026-SM-79OKU 20-29 years, male 8.1
                                        GTEX-145LT-1026-SM-5LU9O 40-49 years, male 7.6
                                        GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 7.5
                                        GTEX-13113-1226-SM-5EGHT 60-69 years, female 7.4
                                        GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 7.4
                                        GTEX-13D11-0726-SM-5LZZB 50-59 years, female 7.4
                                        GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 7.4
                                        GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 7.4
                                        GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 7.0
                                        GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 6.8
                                        GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 6.6
                                        GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 6.1
                                        GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 6.1
                                        GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 6.1
                                        GTEX-13111-1426-SM-5DUW3 50-59 years, male 5.9
                                        GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 5.8
                                        GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 5.7
                                        GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 5.6
                                        GTEX-XBED-1426-SM-4AT4G 60-69 years, male 5.6
                                        GTEX-YFCO-1326-SM-664NV 40-49 years, male 5.5
                                        GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 5.4
                                        GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 5.4
                                        GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 5.0
                                        GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 5.0
                                        GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 4.9
                                        GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 4.7
                                        GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4.7
                                        GTEX-14PN3-2026-SM-68729 60-69 years, female 4.6
                                        GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 4.6
                                        GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 4.5
                                        GTEX-13O21-1026-SM-5IJDU 50-59 years, male 4.4
                                        GTEX-139YR-2226-SM-5IFFW 50-59 years, male 4.3
                                        GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 4.3
                                        GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 4.3
                                        GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4.1
                                        GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4.1
                                        GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 4.0
                                        GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3.9
                                        GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3.8
                                        GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3.7
                                        GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3.6
                                        GTEX-ZTSS-0926-SM-59865 40-49 years, male 3.6
                                        GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.5
                                        GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3.5
                                        GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3.3
                                        GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3.3
                                        GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3.3
                                        GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 3.1
                                        GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3.1
                                        GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 3.0
                                        GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2.9
                                        GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2.9
                                        GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2.9
                                        GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2.9
                                        GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2.7
                                        GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2.7
                                        GTEX-111YS-1426-SM-5GID8 60-69 years, male 2.6
                                        GTEX-1122O-1326-SM-5H11F 60-69 years, female 2.6
                                        GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2.6
                                        GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2.5
                                        GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2.4
                                        GTEX-1192X-2526-SM-59868 50-59 years, male 2.1
                                        GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1.8
                                        GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1.8
                                        GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1.8
                                        GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.8
                                        GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1.7
                                        GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1.7
                                        GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.2
                                        GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.2
                                        GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1.1
                                        GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.9
                                        GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.8
                                        GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.7
                                        GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.7
                                        GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.6
                                        GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 0.6
                                        GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.6
                                        GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.5
                                        GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.5
                                        GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 0.4
                                        GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.4
                                        GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.4
                                        GTEX-117YX-0326-SM-5GICL 50-59 years, male 0.3
                                        GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.3
                                        GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.3
                                        GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.3
                                        GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.2
                                        GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.2
                                        GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.1
                                        GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
                                        Show allShow less

                                        SMALL INTESTINE - FANTOM5 CAGEi

                                        RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                        Max subtype Scaled Tags Per Millioni

                                        Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                        7.7
                                        FANTOM5 sample id Sample description Scaled Tags Per Million
                                        Small intestine
                                        Scaled Tags Per Million: 7.7
                                        FF:10024-101D6 15,40,85 years, mixed 7.7

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