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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS4X is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
541.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2271.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1741.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1730.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1654.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1649.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1623.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1617.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1604.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1546.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1539.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1534.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1493.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1466.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1444.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1437.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1419.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1311.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1232.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1220.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1213.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1191.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1144.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1141.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1047.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1042.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1025.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1016.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1009.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1002.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1000.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
999.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
998.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
998.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
992.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
989.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
989.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
974.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
973.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
952.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
947.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
925.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
901.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
896.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
891.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
884.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
882.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
871.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
870.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
868.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
865.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
863.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
857.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
837.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
835.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
834.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
808.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
807.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
803.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
802.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
790.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
781.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
773.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
769.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
765.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
752.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
751.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
748.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
747.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
738.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
737.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
736.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
736.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
735.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
731.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
728.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
724.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
715.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
708.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
706.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
701.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
689.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
679.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
676.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
661.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
660.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
653.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
651.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
650.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
649.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
649.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
649.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
646.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
640.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
637.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
636.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
634.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
634.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
631.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
628.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
627.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
627.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
624.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
623.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
612.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
611.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
610.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
607.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
600.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
600.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
600.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
592.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
591.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
589.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
586.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
584.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
583.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
581.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
580.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
575.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
574.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
572.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
567.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
565.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
562.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
560.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
558.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
557.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
556.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
554.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
549.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
545.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
542.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
541.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
539.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
538.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
536.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
533.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
533.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
532.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
529.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
528.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
524.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
520.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
519.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
518.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
516.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
511.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
507.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
504.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
504.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
500.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
498.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
497.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
497.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
496.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
496.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
489.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
488.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
487.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
485.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
483.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
481.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
481.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
478.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
475.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
473.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
471.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
471.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
466.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
465.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
461.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
461.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
460.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
456.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
455.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
454.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
453.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
453.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
452.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
445.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
444.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
443.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
443.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
438.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
437.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
434.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
429.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
429.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
428.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
427.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
426.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
426.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
425.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
424.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
423.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
423.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
422.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
421.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
420.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
420.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
415.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
414.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
413.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
412.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
410.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
408.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
407.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
406.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
404.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
403.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
402.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
401.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
401.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
401.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
401.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
401.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
398.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
397.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
397.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
396.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
395.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
393.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
387.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
385.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
384.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
382.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
381.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
377.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
374.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
374.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
374.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
373.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
372.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
371.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
365.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
364.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
364.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
361.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
359.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
359.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
356.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
355.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
352.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
350.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
348.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
347.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
347.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
346.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
343.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
343.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
343.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
338.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
337.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
337.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
337.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
334.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
331.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
330.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
330.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
329.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
328.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
328.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
325.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
324.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
321.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
320.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
320.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
319.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
318.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
317.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
317.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
315.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
315.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
315.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
314.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
313.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
311.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
311.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
308.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
308.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
308.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
307.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
303.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
302.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
301.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
300.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
298.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
297.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
297.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
296.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
296.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
287.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
286.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
285.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
284.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
283.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
282.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
280.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
280.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
280.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
277.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
276.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
275.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
273.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
273.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
272.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
272.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
268.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
265.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
264.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
264.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
263.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
262.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
260.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
259.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
257.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
257.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
256.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
252.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
252.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
251.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
250.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
250.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
249.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
247.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
245.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
245.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
242.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
239.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
233.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
231.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
229.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
228.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
228.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
225.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
225.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
223.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
220.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
220.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
219.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
213.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
212.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
210.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
208.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
207.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
206.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
201.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
199.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
196.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
195.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
192.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
189.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
189.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
189.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
188.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
185.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
182.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
178.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
178.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
172.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
171.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS4X is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
906.5
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
3364.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
3082.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2978.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2949.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2865.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2740.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
2632.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2523.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
2266.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
2207.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
2036.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
1992.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1904.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
1896.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1889.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1790.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
1745.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
1741.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1731.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
1715.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1707.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1633.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
1628.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
1618.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1591.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1563.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
1561.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
1544.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1529.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1486.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1485.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1482.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1415.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
1383.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
1381.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
1335.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1320.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1320.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1267.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
1261.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
1256.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
1250.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1237.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
1233.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1225.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
1222.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
1219.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
1215.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
1210.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
1204.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
1201.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
1199.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1153.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1136.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1117.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1116.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1115.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1114.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
1114.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1113.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1110.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1109.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1057.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1056.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1049.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1049.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
1033.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
1020.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
1005.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
986.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
986.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
984.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
971.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
960.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
954.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
950.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
934.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
930.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
929.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
928.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
926.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
923.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
919.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
913.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
905.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
904.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
897.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
895.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
868.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
863.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
853.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
847.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
842.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
835.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
829.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
825.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
820.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
818.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
809.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
809.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
805.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
803.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
800.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
796.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
789.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
782.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
777.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
763.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
761.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
759.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
758.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
757.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
757.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
747.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
744.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
739.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
734.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
728.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
728.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
727.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
720.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
719.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
718.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
717.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
716.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
713.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
711.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
709.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
704.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
699.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
696.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
694.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
694.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
686.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
681.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
680.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
668.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
664.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
664.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
658.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
658.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
658.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
657.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
656.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
656.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
655.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
646.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
638.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
636.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
631.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
627.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
621.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
620.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
613.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
601.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
599.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
586.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
585.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
584.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
580.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
571.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
566.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
566.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
563.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
562.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
559.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
556.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
553.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
553.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
551.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
550.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
549.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
546.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
540.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
526.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
519.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
517.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
517.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
512.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
509.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
507.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
505.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
505.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
504.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
501.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
491.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
485.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
482.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
477.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
469.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
463.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
462.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
461.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
458.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
454.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
440.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
437.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
435.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
434.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
434.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
434.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
431.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
429.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
420.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
408.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
407.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
407.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
407.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
402.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
392.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
385.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
383.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
380.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
376.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
368.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
367.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
365.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
360.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
359.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
334.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
320.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
319.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
311.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
295.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
287.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
285.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
282.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
264.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
259.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
235.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
190.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
0.7
567
Tumor
0.5
537
Tumor
0.5
367
Tumor
0.5
815
Tumor
0.4
1021
Tumor
0.4
965
Tumor
0.4
661
Tumor
0.4
393
Tumor
0.4
223
Tumor
0.4
851
Tumor
0.4
327
Tumor
0.4
481
Tumor
0.4
685
Tumor
0.3
743
Tumor
0.3
1027
Tumor
0.3
285
Tumor
0.3
745
Tumor
0.3
331
Tumor
0.3
738
Normal
0.3
955
Tumor
0.3
636
Normal
0.3
727
Tumor
0.3
385
Tumor
0.3
395
Tumor
0.2
713
Tumor
0.2
467
Tumor
0.2
135
Tumor
0.2
724
Normal
0.2
1025
Tumor
0.2
967
Tumor
0.2
387
Tumor
0.2
113
Tumor
0.2
777
Tumor
0.2
723
Tumor
0.2
218
Normal
0.2
617
Tumor
0.2
746
Normal
0.2
865
Tumor
0.2
413
Tumor
0.2
527
Tumor
0.2
131
Tumor
0.2
497
Tumor
0.2
573
Tumor
0.2
616
Normal
0.2
227
Tumor
0.2
937
Tumor
0.2
554
Normal
0.2
571
Tumor
0.2
983
Tumor
0.2
443
Tumor
0.2
277
Tumor
0.2
923
Tumor
0.2
217
Tumor
0.2
697
Tumor
0.2
214
Normal
0.2
545
Tumor
0.2
313
Tumor
0.2
671
Tumor
0.2
1026
Normal
0.2
353
Tumor
0.2
647
Tumor
0.2
778
Normal
0.2
191
Tumor
0.2
648
Normal
0.2
546
Normal
0.2
267
Tumor
0.2
968
Normal
0.2
484
Normal
0.2
698
Normal
0.2
1044
Normal
0.2
314
Normal
0.2
665
Tumor
0.2
195
Tumor
0.2
957
Tumor
0.2
332
Normal
0.1
231
Tumor
0.1
533
Tumor
0.1
172
Normal
0.1
136
Normal
0.1
1028
Normal
0.1
257
Tumor
0.1
824
Normal
0.1
278
Normal
0.1
523
Tumor
0.1
488
Normal
0.1
858
Normal
0.1
222
Normal
0.1
852
Normal
0.1
922
Normal
0.1
187
Tumor
0.1
742
Normal
0.1
696
Normal
0.1
425
Tumor
0.1
535
Tumor
0.1
421
Tumor
0.1
431
Tumor
0.1
212
Normal
0.1
426
Normal
0.1
737
Tumor
0.1
924
Normal
0.1
147
Tumor
0.1
635
Tumor
0.1
926
Normal
0.1
171
Tumor
0.1
434
Normal
0.1
966
Normal
0.1
213
Tumor
0.1
462
Normal
0.1
186
Normal
0.1
528
Normal
0.1
728
Normal
0.1
445
Tumor
0.1
433
Tumor
0.1
312
Normal
0.1
534
Normal
0.1
663
Tumor
0.1
518
Normal
0.1
1022
Normal
0.1
756
Normal
0.1
1043
Tumor
0.1
981
Tumor
0.1
494
Normal
0.1
628
Normal
0.1
817
Tumor
0.1
918
Normal
0.1
286
Normal
0.1
232
Normal
0.1
964
Normal
0.1
524
Normal
0.1
818
Normal
0.1
351
Tumor
0.1
185
Tumor
0.1
944
Normal
0.1
452
Normal
0.1
298
Normal
0.1
952
Normal
0.1
714
Normal
0.1
786
Normal
0.1
228
Normal
0.1
448
Normal
0.1
526
Normal
0.1
664
Normal
0.1
864
Normal
0.1
913
Tumor
0.1
114
Normal
0.1
132
Normal
0.1
392
Normal
0.1
451
Tumor
0.1
137
Tumor
0.1
915
Tumor
0.1
686
Normal
0.1
472
Normal
0.1
196
Normal
0.1
128
Normal
0.1
722
Normal
0.1
342
Normal
0.1
951
Tumor
0.1
873
Tumor
0.1
414
Normal
0.1
447
Tumor
0.1
572
Normal
0.1
344
Normal
0.1
525
Tumor
0.1
436
Normal
0.1
162
Normal
0.1
553
Tumor
0.1
211
Tumor
0.1
568
Normal
0.1
1015
Tumor
0.1
956
Normal
0.1
394
Normal
0.1
463
Tumor
0.1
984
Normal
0.1
642
Normal
0.1
721
Tumor
0.1
112
Tumor
0.1
816
Normal
0.0
963
Tumor
0.0
1031
Tumor
0.0
958
Normal
0.0
221
Tumor
0.0
615
Tumor
0.0
432
Normal
0.0
755
Tumor
0.0
564
Normal
0.0
474
Normal
0.0
145
Tumor
0.0
978
Normal
0.0
1032
Normal
0.0
422
Normal
0.0
427
Tumor
0.0
536
Normal
0.0
363
Tumor
0.0
558
Normal
0.0
111
Normal
0.0
715
Tumor
0.0
1014
Normal
0.0
126
Normal
0.0
138
Normal
0.0
482
Normal
0.0
912
Normal
0.0
982
Normal
0.0
271
Tumor
0.0
411
Tumor
0.0
618
Normal
0.0
1042
Normal
0.0
1016
Normal
0.0
455
Tumor
0.0
258
Normal
0.0
862
Normal
0.0
412
Normal
0.0
435
Tumor
0.0
375
Tumor
0.0
376
Normal
0.0
492
Normal
0.0
328
Normal
0.0
857
Tumor
0.0
466
Normal
0.0
362
Normal
0.0
487
Tumor
0.0
861
Tumor
0.0
866
Normal
0.0
356
Normal
0.0
386
Normal
0.0
446
Normal
0.0
666
Normal
0.0
142
Normal
0.0
357
Tumor
0.0
925
Tumor
0.0
538
Normal
0.0
514
Normal
0.0
1046
Normal
0.0
515
Tumor
0.0
695
Tumor
0.0
358
Normal
0.0
662
Normal
0.0
148
Normal
0.0
516
Normal
0.0
916
Normal
0.0
388
Normal
0.0
284
Normal
0.0
396
Normal
0.0
464
Normal
0.0
391
Tumor
0.0
272
Normal
0.0
343
Tumor
0.0
882
Normal
0.0
355
Tumor
0.0
785
Tumor
0.0
352
Normal
0.0
424
Normal
0.0
262
Normal
0.0
283
Tumor
0.0
493
Tumor
0.0
513
Tumor
0.0
744
Normal
0.0
124
Normal
0.0
921
Tumor
0.0
716
Normal
0.0
938
Normal
0.0
672
Normal
0.0
953
Tumor
0.0
423
Tumor
0.0
477
Tumor
0.0
125
Tumor
0.0
468
Normal
0.0
478
Normal
0.0
188
Normal
0.0
268
Normal
0.0
461
Tumor
0.0
878
Normal
0.0
976
Normal
0.0
146
Normal
0.0
456
Normal
0.0
877
Tumor
0.0
881
Tumor
0.0
361
Tumor
0.0
641
Tumor
-0.1
884
Normal
-0.1
943
Tumor
-0.1
813
Tumor
-0.1
428
Normal
-0.1
823
Tumor
-0.1
161
Tumor
-0.1
297
Tumor
-0.1
224
Normal
-0.1
123
Tumor
-0.1
354
Normal
-0.1
883
Tumor
-0.1
483
Tumor
-0.1
975
Tumor
-0.1
341
Tumor
-0.1
365
Tumor
-0.1
192
Normal
-0.1
814
Normal
-0.1
574
Normal
-0.1
471
Tumor
-0.1
563
Tumor
-0.1
141
Tumor
-0.1
127
Tumor
-0.1
954
Normal
-0.1
874
Normal
-0.1
917
Tumor
-0.1
261
Tumor
-0.1
473
Tumor
-0.1
465
Tumor
-0.1
914
Normal
-0.1
364
Normal
-0.1
491
Tumor
-0.1
1013
Tumor
-0.1
368
Normal
-0.1
868
Normal
-0.1
366
Normal
-0.1
444
Normal
-0.1
1041
Tumor
-0.1
415
Tumor
-0.2
498
Normal
-0.2
627
Tumor
-0.2
517
Tumor
-0.2
384
Normal
-0.2
416
Normal
-0.2
867
Tumor
-0.2
383
Tumor
-0.2
977
Tumor
-0.2
911
Tumor
-0.2
311
Tumor
-0.2
741
Tumor
-0.2
863
Tumor
-0.2
1045
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.