MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:158.3 nTPM
HPA Brain:330.6 nTPM
GTEx:158.3 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:317.5 nTPM
Mouse:529.8 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 330.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 242.5
2586 Male, age 75, left hemisphere 317.9
1827 Male, age 72, unknown 278.0
2219 Male, age 76, both hemispheres 273.4
2828 Female, age 72, unknown 264.2
2666 Male, age 74, left hemisphere 252.0
2411 Female, age 72, unknown 238.7
2019 Male, age 18, unknown 238.0
1870 Female, age 42, unknown 194.5
1833 Male, age 53, unknown 187.1
1830 Male, age 51, unknown 181.5
Dorsal raphe nucleus
nTPM: 233.4
2298 Female, age 72, unknown 280.7
2047 Male, age 72, unknown 266.5
1828 Male, age 53, unknown 226.0
2750 Male, age 76, both hemispheres 219.9
2016 Female, age 72, unknown 174.0
Inferior colliculus
nTPM: 240.0
2097 Female, age 72, unknown 251.3
1848 Female, age 42, unknown 249.8
2849 Male, age 72, unknown 237.5
1890 Male, age 53, unknown 221.3
Median raphe nucleus
nTPM: 274.4
2220 Male, age 76, midline 274.4
Periaquaductal grey, anterior
nTPM: 330.6
2502 Female, age 75, unknown 422.9
1795 Male, age 51, unknown 295.8
1947 Male, age 18, unknown 273.0
Periaquaductal grey, dorsal
nTPM: 220.8
1840 Male, age 53, unknown 246.3
2464 Female, age 72, unknown 232.2
1831 Male, age 72, unknown 217.5
2850 Male, age 76, both hemispheres 187.1
Periaquaductal grey, lateral
nTPM: 175.6
2053 Male, age 18, unknown 192.5
2140 Male, age 76, both hemispheres 192.5
2272 Male, age 74, both hemispheres 141.8
Pretectal area
nTPM: 256.4
2007 Male, age 72, unknown 358.3
1816 Male, age 51, unknown 337.1
1944 Female, age 72, unknown 327.6
1817 Female, age 42, unknown 295.3
2667 Female, age 75, unknown 265.3
1815 Male, age 53, unknown 246.0
2224 Female, age 72, unknown 221.3
2825 Male, age 18, unknown 219.8
2316 Male, age 76, right hemisphere 201.3
2407 Male, age 75, both hemispheres 200.9
2273 Male, age 74, both hemispheres 147.9
Red nucleus
nTPM: 179.5
2785 Male, age 18, unknown 229.7
2584 Male, age 75, left hemisphere 224.8
2588 Male, age 74, left hemisphere 194.9
1821 Female, age 72, unknown 183.1
2769 Male, age 72, unknown 182.9
1954 Female, age 42, unknown 179.2
2227 Male, age 72, unknown 177.4
2503 Female, age 72, unknown 165.2
2725 Female, age 75, unknown 160.8
2823 Male, age 76, right hemisphere 158.1
1865 Male, age 51, unknown 150.1
1904 Male, age 53, unknown 148.1
Substantia nigra
nTPM: 254.2
1941 Male, age 53, unknown 394.1
2665 Male, age 74, both hemispheres 351.3
1916 Female, age 42, unknown 319.7
1889 Female, age 72, unknown 278.0
1851 Male, age 51, unknown 273.5
2699 Male, age 18, unknown 199.1
2241 Male, age 72, unknown 196.0
2590 Female, age 75, unknown 189.2
2409 Female, age 72, unknown 173.1
2583 Male, age 75, right hemisphere 167.9
Superior colliculus
nTPM: 237.3
2664 Male, age 75, both hemispheres 345.6
2087 Female, age 72, unknown 291.5
2261 Male, age 18, unknown 264.7
1796 Male, age 53, unknown 262.2
1895 Male, age 76, right hemisphere 242.5
2668 Female, age 75, unknown 234.4
1839 Male, age 51, unknown 232.3
2587 Male, age 74, left hemisphere 207.1
1913 Female, age 42, unknown 146.8
1995 Male, age 72, unknown 145.6
Ventral tegmental area
nTPM: 250.5
2218 Male, age 76, both hemispheres 306.3
1915 Female, age 42, unknown 281.0
1942 Male, age 51, unknown 273.4
2410 Female, age 72, unknown 246.0
2021 Male, age 53, unknown 203.1
2223 Female, age 72, unknown 192.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 158.3
GTEx sample id Sample description nTPM
91.9138.1209.133.7348.8050100150200250300350400450500550600650700
Brain - Substantia nigra
Average nTPM: 158.3
Samples: 139

Max nTPM: 702.4
Min nTPM: 33.7
Std nTPM: 94.4
Median nTPM: 138.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 702.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 492.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 394.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 348.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 332.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 308.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 298.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 295.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 288.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 280.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 274.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.6
FF:10158-103A5 76 years, female 47.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 317.5
Pig sample Sample description nTPM
124.2218.8316.370.7378.4050100150200250300350
 		Substantia nigra
nTPM: 221.7
Samples: 4

Max nTPM: 378.4
Min nTPM: 70.7
Sample A Female 378.4
Sample B Female 142.0
Sample C Male 295.6
Sample D Male 70.7
186.1254.4321.896.8408.7050100150200250300350400
 		Midbrain
nTPM: 253.6
Samples: 4

Max nTPM: 408.7
Min nTPM: 96.8
Sample A Female 96.8
Sample B Female 215.9
Sample C Male 408.7
Sample D Male 292.8
174.8187.1220.6162.6254.0020406080100120140160180200220240
 		Periaqueductal gray
nTPM: 201.2
Samples: 3

Max nTPM: 254.0
Min nTPM: 162.6
Sample B Female 187.1
Sample C Male 254.0
Sample D Male 162.6
245.1326.6399.0158.9457.9050100150200250300350400450
 		Superior colliculi
nTPM: 317.5
Samples: 4

Max nTPM: 457.9
Min nTPM: 158.9
Sample A Female 379.4
Sample B Female 158.9
Sample C Male 457.9
Sample D Male 273.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 529.8
Mouse sample Sample description nTPM
493.0521.2558.0460.1616.8050100150200250300350400450500550600
 		Midbrain
nTPM: 529.8
Samples: 4

Max nTPM: 616.8
Min nTPM: 460.1
Sample A Male 616.8
Sample B Male 504.0
Sample C Female 460.1
Sample D Female 538.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
1004 Antisense, RP_Baylor_103022, Mouse strain C57BL/6J (56 days, male) 14.8

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