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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SND1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
276.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
196.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
193.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
159.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
159.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
153.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
151.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
149.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
149.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
145.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
141.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
141.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
139.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
135.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
127.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
126.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
125.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
124.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
124.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
124.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
123.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
123.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
121.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
119.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
118.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
118.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
117.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
117.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
117.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
117.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
113.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
113.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
112.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
112.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
110.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
110.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
109.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
108.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
108.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
107.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
106.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
105.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
105.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
105.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
104.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
102.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
102.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
102.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
99.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
99.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
98.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
98.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
97.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
96.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
96.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
96.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
96.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
95.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
95.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
94.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
93.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
93.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
93.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
91.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
91.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
91.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
91.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
91.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
90.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
90.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
90.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
90.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
89.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
89.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
88.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
88.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
87.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
87.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
87.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
87.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
86.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
86.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
85.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
85.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
85.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
85.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
85.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
84.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
84.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
84.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
84.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
83.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
82.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
82.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
82.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
81.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
81.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
81.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
80.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
80.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
80.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
80.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
79.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
79.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
79.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
79.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
78.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
78.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
78.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
78.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
77.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
77.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
77.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
77.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
77.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
76.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
76.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
76.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
75.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
75.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
74.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
74.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
74.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
73.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
72.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
72.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
71.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
70.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
70.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
70.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
70.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
69.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
69.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
69.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
68.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
68.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
68.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
67.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
67.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
67.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
67.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
67.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
65.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
65.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
64.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
64.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
64.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
64.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
63.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
63.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
63.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
63.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
63.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
63.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
62.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
62.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
62.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
62.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
62.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
62.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
61.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
61.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
60.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
59.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
58.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
58.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
58.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
57.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
55.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
53.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
52.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
52.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
51.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
51.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
50.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
48.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
48.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
48.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
45.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SND1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.3
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
117.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
110.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
106.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
105.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
103.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
100.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
96.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
95.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
94.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
93.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
92.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
90.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
89.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
87.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
87.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
87.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
85.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
84.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
84.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
83.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
81.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
81.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
81.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
81.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
79.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
79.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
78.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
78.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
78.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
75.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
74.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
74.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
73.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
73.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
73.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
73.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
73.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
72.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
71.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
69.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
69.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
69.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
68.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
68.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
68.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
67.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
67.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
67.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
66.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
66.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
65.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
64.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
64.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
64.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
64.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
63.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
63.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
63.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
62.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
61.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
61.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
60.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
60.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
59.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
59.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
57.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
56.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
56.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
56.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
56.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
56.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
54.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
54.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
54.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
53.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
53.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
53.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
52.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
52.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
49.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
48.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
48.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
47.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
46.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
46.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
46.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
45.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
42.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
40.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
39.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
481
Tumor
0.7
387
Tumor
0.6
327
Tumor
0.6
231
Tumor
0.5
937
Tumor
0.4
353
Tumor
0.4
147
Tumor
0.4
171
Tumor
0.4
557
Tumor
0.4
223
Tumor
0.4
697
Tumor
0.4
137
Tumor
0.4
443
Tumor
0.4
1021
Tumor
0.3
965
Tumor
0.3
851
Tumor
0.3
195
Tumor
0.3
421
Tumor
0.3
1015
Tumor
0.3
865
Tumor
0.3
755
Tumor
0.3
257
Tumor
0.3
467
Tumor
0.2
925
Tumor
0.2
411
Tumor
0.2
661
Tumor
0.2
724
Normal
0.2
267
Tumor
0.2
713
Tumor
0.2
285
Tumor
0.2
363
Tumor
0.2
915
Tumor
0.2
445
Tumor
0.2
497
Tumor
0.2
567
Tumor
0.2
514
Normal
0.2
351
Tumor
0.2
727
Tumor
0.2
537
Tumor
0.2
728
Normal
0.2
955
Tumor
0.2
636
Normal
0.2
1027
Tumor
0.2
571
Tumor
0.2
745
Tumor
0.2
723
Tumor
0.2
191
Tumor
0.2
425
Tumor
0.2
743
Tumor
0.2
721
Tumor
0.1
617
Tumor
0.1
648
Normal
0.1
356
Normal
0.1
981
Tumor
0.1
462
Normal
0.1
527
Tumor
0.1
395
Tumor
0.1
883
Tumor
0.1
212
Normal
0.1
518
Normal
0.1
187
Tumor
0.1
1016
Normal
0.1
665
Tumor
0.1
1025
Tumor
0.1
526
Normal
0.1
558
Normal
0.1
128
Normal
0.1
568
Normal
0.1
628
Normal
0.1
968
Normal
0.1
214
Normal
0.1
232
Normal
0.1
286
Normal
0.1
746
Normal
0.1
738
Normal
0.1
271
Tumor
0.1
136
Normal
0.1
412
Normal
0.1
528
Normal
0.1
114
Normal
0.1
314
Normal
0.1
483
Tumor
0.1
918
Normal
0.1
258
Normal
0.1
616
Normal
0.1
742
Normal
0.1
493
Tumor
0.1
451
Tumor
0.1
123
Tumor
0.1
964
Normal
0.1
864
Normal
0.1
913
Tumor
0.1
414
Normal
0.1
777
Tumor
0.1
926
Normal
0.1
112
Tumor
0.1
227
Tumor
0.1
513
Tumor
0.1
278
Normal
0.1
861
Tumor
0.1
664
Normal
0.1
145
Tumor
0.1
951
Tumor
0.1
515
Tumor
0.1
436
Normal
0.1
494
Normal
0.1
696
Normal
0.1
474
Normal
0.1
647
Tumor
0.1
312
Normal
0.1
785
Tumor
0.1
446
Normal
0.1
823
Tumor
0.1
222
Normal
0.1
376
Normal
0.1
111
Normal
0.1
284
Normal
0.1
228
Normal
0.1
944
Normal
0.1
261
Tumor
0.1
963
Tumor
0.1
564
Normal
0.1
452
Normal
0.1
466
Normal
0.1
1044
Normal
0.0
277
Tumor
0.0
618
Normal
0.0
365
Tumor
0.0
922
Normal
0.0
642
Normal
0.0
952
Normal
0.0
1026
Normal
0.0
1014
Normal
0.0
358
Normal
0.0
756
Normal
0.0
912
Normal
0.0
328
Normal
0.0
217
Tumor
0.0
186
Normal
0.0
534
Normal
0.0
332
Normal
0.0
426
Normal
0.0
911
Tumor
0.0
424
Normal
0.0
132
Normal
0.0
868
Normal
0.0
572
Normal
0.0
966
Normal
0.0
662
Normal
0.0
422
Normal
0.0
984
Normal
0.0
873
Tumor
0.0
196
Normal
0.0
524
Normal
0.0
786
Normal
0.0
698
Normal
0.0
1046
Normal
0.0
778
Normal
0.0
722
Normal
0.0
866
Normal
0.0
685
Tumor
0.0
367
Tumor
0.0
416
Normal
0.0
472
Normal
0.0
958
Normal
0.0
535
Tumor
0.0
461
Tumor
0.0
142
Normal
0.0
448
Normal
0.0
554
Normal
0.0
218
Normal
0.0
126
Normal
0.0
533
Tumor
0.0
546
Normal
0.0
1042
Normal
0.0
162
Normal
0.0
434
Normal
0.0
1022
Normal
0.0
983
Tumor
0.0
956
Normal
0.0
938
Normal
0.0
113
Tumor
0.0
357
Tumor
0.0
862
Normal
0.0
428
Normal
0.0
464
Normal
0.0
138
Normal
0.0
857
Tumor
0.0
341
Tumor
0.0
468
Normal
0.0
914
Normal
0.0
916
Normal
0.0
824
Normal
0.0
127
Tumor
0.0
716
Normal
0.0
1032
Normal
0.0
298
Normal
0.0
262
Normal
0.0
361
Tumor
0.0
172
Normal
0.0
714
Normal
0.0
686
Normal
0.0
482
Normal
0.0
858
Normal
0.0
364
Normal
0.0
473
Tumor
0.0
978
Normal
0.0
884
Normal
0.0
816
Normal
0.0
431
Tumor
0.0
666
Normal
0.0
488
Normal
0.0
423
Tumor
0.0
924
Normal
0.0
433
Tumor
0.0
737
Tumor
0.0
415
Tumor
0.0
185
Tumor
0.0
852
Normal
0.0
455
Tumor
0.0
148
Normal
0.0
388
Normal
0.0
392
Normal
0.0
484
Normal
0.0
432
Normal
0.0
1028
Normal
0.0
368
Normal
0.0
362
Normal
0.0
923
Tumor
0.0
385
Tumor
0.0
574
Normal
0.0
221
Tumor
0.0
272
Normal
0.0
878
Normal
-0.1
487
Tumor
-0.1
516
Normal
-0.1
396
Normal
-0.1
352
Normal
-0.1
124
Normal
-0.1
456
Normal
-0.1
393
Tumor
-0.1
867
Tumor
-0.1
394
Normal
-0.1
384
Normal
-0.1
342
Normal
-0.1
882
Normal
-0.1
976
Normal
-0.1
982
Normal
-0.1
715
Tumor
-0.1
536
Normal
-0.1
188
Normal
-0.1
386
Normal
-0.1
563
Tumor
-0.1
672
Normal
-0.1
268
Normal
-0.1
161
Tumor
-0.1
863
Tumor
-0.1
492
Normal
-0.1
874
Normal
-0.1
517
Tumor
-0.1
573
Tumor
-0.1
818
Normal
-0.1
615
Tumor
-0.1
297
Tumor
-0.1
663
Tumor
-0.1
471
Tumor
-0.1
815
Tumor
-0.1
465
Tumor
-0.1
366
Normal
-0.1
224
Normal
-0.1
627
Tumor
-0.1
213
Tumor
-0.1
344
Normal
-0.1
435
Tumor
-0.1
975
Tumor
-0.1
477
Tumor
-0.1
211
Tumor
-0.2
671
Tumor
-0.2
1041
Tumor
-0.2
444
Normal
-0.2
427
Tumor
-0.2
311
Tumor
-0.2
943
Tumor
-0.2
135
Tumor
-0.2
354
Normal
-0.2
954
Normal
-0.2
525
Tumor
-0.2
478
Normal
-0.2
146
Normal
-0.2
463
Tumor
-0.2
375
Tumor
-0.2
813
Tumor
-0.2
953
Tumor
-0.2
641
Tumor
-0.2
917
Tumor
-0.2
192
Normal
-0.2
967
Tumor
-0.2
523
Tumor
-0.2
283
Tumor
-0.2
125
Tumor
-0.2
1031
Tumor
-0.2
498
Normal
-0.2
977
Tumor
-0.2
1045
Tumor
-0.2
1013
Tumor
-0.2
877
Tumor
-0.2
545
Tumor
-0.2
313
Tumor
-0.2
1043
Tumor
-0.2
355
Tumor
-0.2
814
Normal
-0.2
141
Tumor
-0.3
881
Tumor
-0.3
331
Tumor
-0.3
741
Tumor
-0.3
553
Tumor
-0.3
391
Tumor
-0.3
921
Tumor
-0.3
744
Normal
-0.3
447
Tumor
-0.3
383
Tumor
-0.3
538
Normal
-0.3
635
Tumor
-0.3
343
Tumor
-0.4
817
Tumor
-0.4
957
Tumor
-0.4
413
Tumor
-0.5
491
Tumor
-0.5
131
Tumor
-0.5
695
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
