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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRN3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRN3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
483
Tumor
0.5
1013
Tumor
0.5
983
Tumor
0.5
311
Tumor
0.5
1027
Tumor
0.4
953
Tumor
0.4
477
Tumor
0.4
257
Tumor
0.4
957
Tumor
0.4
815
Tumor
0.4
745
Tumor
0.4
1025
Tumor
0.4
915
Tumor
0.4
967
Tumor
0.4
536
Normal
0.4
981
Tumor
0.4
487
Tumor
0.4
413
Tumor
0.4
535
Tumor
0.4
958
Normal
0.3
285
Tumor
0.3
695
Tumor
0.3
363
Tumor
0.3
968
Normal
0.3
481
Tumor
0.3
537
Tumor
0.3
463
Tumor
0.3
131
Tumor
0.3
938
Normal
0.3
455
Tumor
0.3
125
Tumor
0.3
473
Tumor
0.3
478
Normal
0.3
524
Normal
0.3
964
Normal
0.3
135
Tumor
0.3
375
Tumor
0.3
917
Tumor
0.2
865
Tumor
0.2
497
Tumor
0.2
926
Normal
0.2
355
Tumor
0.2
527
Tumor
0.2
1014
Normal
0.2
818
Normal
0.2
851
Tumor
0.2
852
Normal
0.2
484
Normal
0.2
641
Tumor
0.2
1044
Normal
0.2
227
Tumor
0.2
545
Tumor
0.2
672
Normal
0.2
491
Tumor
0.2
554
Normal
0.2
492
Normal
0.2
944
Normal
0.2
723
Tumor
0.2
558
Normal
0.2
824
Normal
0.2
912
Normal
0.2
223
Tumor
0.2
192
Normal
0.2
488
Normal
0.2
538
Normal
0.2
553
Tumor
0.2
534
Normal
0.2
224
Normal
0.2
1032
Normal
0.2
498
Normal
0.2
364
Normal
0.2
528
Normal
0.2
628
Normal
0.2
546
Normal
0.2
268
Normal
0.2
696
Normal
0.2
636
Normal
0.2
1022
Normal
0.2
666
Normal
0.2
916
Normal
0.2
883
Tumor
0.2
954
Normal
0.2
976
Normal
0.2
313
Tumor
0.2
514
Normal
0.2
297
Tumor
0.2
922
Normal
0.2
878
Normal
0.2
327
Tumor
0.2
738
Normal
0.2
1026
Normal
0.2
421
Tumor
0.2
984
Normal
0.2
882
Normal
0.2
261
Tumor
0.2
161
Tumor
0.2
448
Normal
0.2
482
Normal
0.2
744
Normal
0.2
462
Normal
0.2
965
Tumor
0.2
472
Normal
0.2
881
Tumor
0.2
966
Normal
0.2
671
Tumor
0.2
212
Normal
0.2
228
Normal
0.2
518
Normal
0.2
616
Normal
0.2
284
Normal
0.2
146
Normal
0.2
356
Normal
0.2
862
Normal
0.2
1045
Tumor
0.2
142
Normal
0.2
1043
Tumor
0.1
412
Normal
0.1
385
Tumor
0.1
982
Normal
0.1
756
Normal
0.1
445
Tumor
0.1
332
Normal
0.1
286
Normal
0.1
494
Normal
0.1
1046
Normal
0.1
955
Tumor
0.1
978
Normal
0.1
533
Tumor
0.1
921
Tumor
0.1
963
Tumor
0.1
918
Normal
0.1
817
Tumor
0.1
727
Tumor
0.1
778
Normal
0.1
686
Normal
0.1
924
Normal
0.1
568
Normal
0.1
132
Normal
0.1
618
Normal
0.1
716
Normal
0.1
813
Tumor
0.1
474
Normal
0.1
642
Normal
0.1
713
Tumor
0.1
685
Tumor
0.1
975
Tumor
0.1
714
Normal
0.1
877
Tumor
0.1
648
Normal
0.1
572
Normal
0.1
617
Tumor
0.1
884
Normal
0.1
816
Normal
0.1
314
Normal
0.1
136
Normal
0.1
857
Tumor
0.1
283
Tumor
0.1
866
Normal
0.1
493
Tumor
0.1
196
Normal
0.1
722
Normal
0.1
415
Tumor
0.1
858
Normal
0.1
1016
Normal
0.1
864
Normal
0.1
395
Tumor
0.1
923
Tumor
0.1
328
Normal
0.1
937
Tumor
0.1
516
Normal
0.1
218
Normal
0.1
416
Normal
0.1
447
Tumor
0.1
1028
Normal
0.1
148
Normal
0.1
952
Normal
0.1
467
Tumor
0.1
353
Tumor
0.1
911
Tumor
0.1
868
Normal
0.1
312
Normal
0.1
523
Tumor
0.1
867
Tumor
0.1
786
Normal
0.1
874
Normal
0.1
515
Tumor
0.1
662
Normal
0.1
298
Normal
0.1
137
Tumor
0.1
431
Tumor
0.1
664
Normal
0.1
661
Tumor
0.1
956
Normal
0.1
526
Normal
0.1
943
Tumor
0.1
742
Normal
0.0
141
Tumor
0.0
1031
Tumor
0.0
145
Tumor
0.0
1042
Normal
0.0
232
Normal
0.0
615
Tumor
0.0
138
Normal
0.0
357
Tumor
0.0
424
Normal
0.0
272
Normal
0.0
743
Tumor
0.0
464
Normal
0.0
1041
Tumor
0.0
863
Tumor
0.0
222
Normal
0.0
468
Normal
0.0
564
Normal
0.0
126
Normal
0.0
344
Normal
0.0
451
Tumor
0.0
466
Normal
0.0
715
Tumor
0.0
392
Normal
0.0
394
Normal
0.0
384
Normal
0.0
195
Tumor
0.0
728
Normal
0.0
721
Tumor
0.0
471
Tumor
0.0
396
Normal
0.0
951
Tumor
0.0
386
Normal
0.0
823
Tumor
0.0
387
Tumor
0.0
785
Tumor
0.0
365
Tumor
0.0
574
Normal
0.0
698
Normal
0.0
456
Normal
0.0
185
Tumor
0.0
376
Normal
0.0
217
Tumor
0.0
746
Normal
0.0
422
Normal
0.0
124
Normal
0.0
563
Tumor
0.0
127
Tumor
0.0
426
Normal
0.0
873
Tumor
0.0
352
Normal
0.0
741
Tumor
0.0
354
Normal
0.0
627
Tumor
0.0
414
Normal
0.0
737
Tumor
0.0
513
Tumor
0.0
188
Normal
0.0
861
Tumor
0.0
262
Normal
0.0
1015
Tumor
0.0
186
Normal
-0.1
434
Normal
-0.1
278
Normal
-0.1
913
Tumor
-0.1
277
Tumor
-0.1
814
Normal
-0.1
221
Tumor
-0.1
388
Normal
-0.1
444
Normal
-0.1
697
Tumor
-0.1
258
Normal
-0.1
428
Normal
-0.1
214
Normal
-0.1
571
Tumor
-0.1
436
Normal
-0.1
665
Tumor
-0.1
213
Tumor
-0.1
128
Normal
-0.1
162
Normal
-0.1
187
Tumor
-0.1
443
Tumor
-0.1
914
Normal
-0.1
342
Normal
-0.1
432
Normal
-0.1
147
Tumor
-0.1
557
Tumor
-0.1
361
Tumor
-0.1
452
Normal
-0.1
427
Tumor
-0.1
172
Normal
-0.1
112
Tumor
-0.1
411
Tumor
-0.1
343
Tumor
-0.1
635
Tumor
-0.1
111
Normal
-0.1
331
Tumor
-0.1
461
Tumor
-0.1
114
Normal
-0.1
1021
Tumor
-0.1
573
Tumor
-0.1
423
Tumor
-0.1
925
Tumor
-0.1
362
Normal
-0.1
433
Tumor
-0.2
366
Normal
-0.2
663
Tumor
-0.2
446
Normal
-0.2
113
Tumor
-0.2
211
Tumor
-0.2
271
Tumor
-0.2
567
Tumor
-0.2
358
Normal
-0.2
425
Tumor
-0.2
191
Tumor
-0.2
123
Tumor
-0.2
647
Tumor
-0.2
777
Tumor
-0.2
367
Tumor
-0.2
368
Normal
-0.2
435
Tumor
-0.2
977
Tumor
-0.2
393
Tumor
-0.2
341
Tumor
-0.2
383
Tumor
-0.2
231
Tumor
-0.3
517
Tumor
-0.3
267
Tumor
-0.3
525
Tumor
-0.3
755
Tumor
-0.3
171
Tumor
-0.3
351
Tumor
-0.4
391
Tumor
-0.4
465
Tumor
-0.5
724
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.