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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TLE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
279.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
252.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
177.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
167.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
164.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
159.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
153.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
145.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
145.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
141.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
133.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
133.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
127.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
116.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
113.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
112.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
112.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
111.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
111.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
110.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
107.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
104.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
104.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
104.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
104.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
103.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
103.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
103.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
103.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
100.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
98.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
97.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
94.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
94.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
92.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
92.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
91.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
90.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
90.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
88.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
86.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
86.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
86.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
85.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
84.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
82.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
81.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
80.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
80.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
80.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
79.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
77.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
77.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
76.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
76.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
76.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
76.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
76.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
75.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
75.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
74.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
74.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
74.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
74.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
73.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
73.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
73.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
72.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
72.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
72.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
72.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
71.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
69.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
69.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
69.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
68.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
68.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
67.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
67.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
67.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
65.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
65.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
65.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
64.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
63.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
63.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
63.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
62.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
62.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
61.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
60.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
60.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
60.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
58.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
57.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
57.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
55.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
55.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
53.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
52.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
51.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
50.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
49.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
48.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
48.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
47.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
47.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
46.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
43.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
43.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
43.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
41.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
40.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
36.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TLE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
96.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
79.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
73.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
57.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
50.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
49.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.4
463
Tumor
1.0
131
Tumor
0.9
977
Tumor
0.9
497
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
477
Tumor
0.8
523
Tumor
0.8
921
Tumor
0.8
865
Tumor
0.7
545
Tumor
0.7
967
Tumor
0.6
517
Tumor
0.6
817
Tumor
0.6
411
Tumor
0.6
1031
Tumor
0.6
147
Tumor
0.6
277
Tumor
0.6
435
Tumor
0.5
123
Tumor
0.5
737
Tumor
0.5
341
Tumor
0.5
553
Tumor
0.5
331
Tumor
0.5
975
Tumor
0.5
427
Tumor
0.5
983
Tumor
0.4
965
Tumor
0.4
1041
Tumor
0.4
877
Tumor
0.4
695
Tumor
0.4
1025
Tumor
0.4
112
Tumor
0.4
635
Tumor
0.4
221
Tumor
0.4
915
Tumor
0.4
867
Tumor
0.4
567
Tumor
0.4
171
Tumor
0.4
671
Tumor
0.4
537
Tumor
0.3
385
Tumor
0.3
937
Tumor
0.3
473
Tumor
0.3
641
Tumor
0.3
724
Normal
0.3
943
Tumor
0.3
127
Tumor
0.3
533
Tumor
0.3
161
Tumor
0.3
445
Tumor
0.3
1013
Tumor
0.3
271
Tumor
0.3
881
Tumor
0.3
413
Tumor
0.3
661
Tumor
0.3
857
Tumor
0.3
211
Tumor
0.3
487
Tumor
0.3
393
Tumor
0.3
851
Tumor
0.3
813
Tumor
0.2
283
Tumor
0.2
685
Tumor
0.2
527
Tumor
0.2
227
Tumor
0.2
1015
Tumor
0.2
447
Tumor
0.2
493
Tumor
0.2
431
Tumor
0.2
861
Tumor
0.2
951
Tumor
0.2
231
Tumor
0.2
483
Tumor
0.2
953
Tumor
0.2
443
Tumor
0.2
491
Tumor
0.2
823
Tumor
0.2
727
Tumor
0.2
313
Tumor
0.2
963
Tumor
0.2
357
Tumor
0.2
125
Tumor
0.2
715
Tumor
0.2
917
Tumor
0.2
213
Tumor
0.2
467
Tumor
0.2
713
Tumor
0.2
557
Tumor
0.1
355
Tumor
0.1
471
Tumor
0.1
814
Normal
0.1
538
Normal
0.1
498
Normal
0.1
423
Tumor
0.1
824
Normal
0.1
524
Normal
0.1
363
Tumor
0.1
923
Tumor
0.1
741
Tumor
0.1
185
Tumor
0.1
873
Tumor
0.1
815
Tumor
0.1
1043
Tumor
0.1
852
Normal
0.1
647
Tumor
0.1
433
Tumor
0.1
217
Tumor
0.1
957
Tumor
0.1
981
Tumor
0.1
573
Tumor
0.1
297
Tumor
0.1
343
Tumor
0.1
367
Tumor
0.1
982
Normal
0.1
451
Tumor
0.1
1021
Tumor
0.1
515
Tumor
0.1
383
Tumor
0.1
465
Tumor
0.0
818
Normal
0.0
863
Tumor
0.0
311
Tumor
0.0
976
Normal
0.0
461
Tumor
0.0
1046
Normal
0.0
744
Normal
0.0
391
Tumor
0.0
534
Normal
0.0
135
Tumor
0.0
858
Normal
0.0
444
Normal
0.0
392
Normal
0.0
742
Normal
0.0
356
Normal
0.0
426
Normal
0.0
516
Normal
0.0
984
Normal
0.0
745
Tumor
0.0
966
Normal
0.0
911
Tumor
0.0
617
Tumor
0.0
332
Normal
0.0
883
Tumor
0.0
492
Normal
0.0
351
Tumor
0.0
1028
Normal
0.0
1032
Normal
0.0
636
Normal
0.0
375
Tumor
0.0
755
Tumor
0.0
284
Normal
0.0
424
Normal
0.0
223
Tumor
0.0
384
Normal
0.0
954
Normal
0.0
342
Normal
0.0
672
Normal
0.0
428
Normal
0.0
916
Normal
0.0
663
Tumor
0.0
395
Tumor
0.0
422
Normal
-0.1
124
Normal
-0.1
361
Tumor
-0.1
1014
Normal
-0.1
421
Tumor
-0.1
816
Normal
-0.1
1044
Normal
-0.1
721
Tumor
-0.1
416
Normal
-0.1
546
Normal
-0.1
191
Tumor
-0.1
478
Normal
-0.1
192
Normal
-0.1
466
Normal
-0.1
525
Tumor
-0.1
162
Normal
-0.1
528
Normal
-0.1
187
Tumor
-0.1
186
Normal
-0.1
628
Normal
-0.1
344
Normal
-0.1
554
Normal
-0.1
368
Normal
-0.1
756
Normal
-0.1
148
Normal
-0.1
618
Normal
-0.1
1042
Normal
-0.1
455
Tumor
-0.1
866
Normal
-0.1
415
Tumor
-0.1
172
Normal
-0.1
352
Normal
-0.1
535
Tumor
-0.1
257
Tumor
-0.1
536
Normal
-0.1
146
Normal
-0.1
878
Normal
-0.1
964
Normal
-0.1
327
Tumor
-0.1
648
Normal
-0.1
388
Normal
-0.1
723
Tumor
-0.1
414
Normal
-0.1
1045
Tumor
-0.1
224
Normal
-0.1
914
Normal
-0.1
1016
Normal
-0.1
958
Normal
-0.1
922
Normal
-0.1
188
Normal
-0.1
268
Normal
-0.1
488
Normal
-0.1
386
Normal
-0.1
452
Normal
-0.1
366
Normal
-0.1
364
Normal
-0.1
978
Normal
-0.1
777
Tumor
-0.1
196
Normal
-0.1
481
Tumor
-0.1
376
Normal
-0.1
686
Normal
-0.1
716
Normal
-0.1
412
Normal
-0.1
666
Normal
-0.1
696
Normal
-0.1
141
Tumor
-0.1
448
Normal
-0.1
114
Normal
-0.1
138
Normal
-0.1
665
Tumor
-0.1
314
Normal
-0.2
464
Normal
-0.2
214
Normal
-0.2
864
Normal
-0.2
128
Normal
-0.2
786
Normal
-0.2
572
Normal
-0.2
482
Normal
-0.2
955
Tumor
-0.2
563
Tumor
-0.2
434
Normal
-0.2
126
Normal
-0.2
222
Normal
-0.2
142
Normal
-0.2
358
Normal
-0.2
884
Normal
-0.2
267
Tumor
-0.2
472
Normal
-0.2
968
Normal
-0.2
924
Normal
-0.2
218
Normal
-0.2
615
Tumor
-0.2
926
Normal
-0.2
396
Normal
-0.2
1026
Normal
-0.2
642
Normal
-0.2
468
Normal
-0.2
912
Normal
-0.2
664
Normal
-0.2
526
Normal
-0.2
714
Normal
-0.2
882
Normal
-0.2
722
Normal
-0.2
938
Normal
-0.2
868
Normal
-0.2
574
Normal
-0.2
328
Normal
-0.2
862
Normal
-0.2
918
Normal
-0.2
354
Normal
-0.2
494
Normal
-0.2
272
Normal
-0.2
738
Normal
-0.2
616
Normal
-0.2
913
Tumor
-0.2
514
Normal
-0.2
728
Normal
-0.2
513
Tumor
-0.2
944
Normal
-0.2
132
Normal
-0.2
874
Normal
-0.2
698
Normal
-0.2
778
Normal
-0.2
456
Normal
-0.2
195
Tumor
-0.2
746
Normal
-0.2
278
Normal
-0.2
446
Normal
-0.2
312
Normal
-0.2
353
Tumor
-0.2
394
Normal
-0.2
662
Normal
-0.2
387
Tumor
-0.2
362
Normal
-0.2
558
Normal
-0.2
474
Normal
-0.2
261
Tumor
-0.2
365
Tumor
-0.2
298
Normal
-0.3
956
Normal
-0.3
564
Normal
-0.3
1022
Normal
-0.3
258
Normal
-0.3
432
Normal
-0.3
518
Normal
-0.3
228
Normal
-0.3
113
Tumor
-0.3
568
Normal
-0.3
145
Tumor
-0.3
697
Tumor
-0.3
462
Normal
-0.3
1027
Tumor
-0.3
484
Normal
-0.3
136
Normal
-0.3
286
Normal
-0.3
262
Normal
-0.3
137
Tumor
-0.3
111
Normal
-0.3
952
Normal
-0.3
925
Tumor
-0.3
232
Normal
-0.3
212
Normal
-0.4
436
Normal
-0.4
785
Tumor
-0.4
627
Tumor
-0.4
571
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
