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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1386.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
627.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
558.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
527.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
385.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
329.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
274.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
266.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
248.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
227.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
212.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
206.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
192.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
187.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
183.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
171.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
156.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
155.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
154.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
148.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
144.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
140.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
138.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
137.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
136.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
127.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
126.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
126.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
124.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
123.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
122.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
121.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
118.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
117.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
116.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
116.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
112.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
110.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
110.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
102.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
99.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
98.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
98.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
98.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
97.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
93.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
91.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
89.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
88.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
87.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
87.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
87.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
86.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
85.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
85.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
84.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
84.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
84.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
83.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
81.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
80.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
79.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
78.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
77.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
77.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
77.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
76.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
74.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
73.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
72.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
72.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
72.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
71.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
70.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
68.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
68.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
67.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
66.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
66.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
65.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
65.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
65.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
62.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
61.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
60.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
59.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
58.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
58.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
58.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
57.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
56.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
54.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
52.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
52.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
51.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
48.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
45.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
32.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
95.5
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4988.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
4658.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
635.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
622.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
461.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
430.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
385.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
364.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
321.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
243.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
230.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
184.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
174.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
168.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
160.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
156.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
147.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
145.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
144.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
144.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
134.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
134.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
130.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
125.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
121.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
121.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
119.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
118.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
112.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
108.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
101.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
99.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
97.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
94.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
93.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
91.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
87.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
85.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
84.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
80.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
79.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
78.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
78.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
76.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
74.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
74.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
74.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
68.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
68.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
68.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
67.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
65.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
65.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
64.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
62.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
60.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
58.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
57.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
53.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
51.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
46.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
2.2
283
Tumor
1.8
455
Tumor
1.3
661
Tumor
1.3
536
Normal
1.2
211
Tumor
1.2
192
Normal
1.1
917
Tumor
1.1
823
Tumor
1.0
963
Tumor
1.0
471
Tumor
1.0
141
Tumor
1.0
375
Tumor
0.9
1031
Tumor
0.8
447
Tumor
0.8
975
Tumor
0.8
943
Tumor
0.8
355
Tumor
0.8
851
Tumor
0.8
213
Tumor
0.8
492
Normal
0.8
814
Normal
0.8
185
Tumor
0.7
881
Tumor
0.7
877
Tumor
0.7
535
Tumor
0.7
697
Tumor
0.7
125
Tumor
0.7
721
Tumor
0.6
195
Tumor
0.6
434
Normal
0.6
817
Tumor
0.6
815
Tumor
0.6
467
Tumor
0.5
223
Tumor
0.5
491
Tumor
0.5
563
Tumor
0.5
1043
Tumor
0.4
461
Tumor
0.4
421
Tumor
0.4
385
Tumor
0.4
916
Normal
0.4
493
Tumor
0.4
883
Tumor
0.4
966
Normal
0.4
191
Tumor
0.4
413
Tumor
0.4
297
Tumor
0.4
188
Normal
0.4
724
Normal
0.4
983
Tumor
0.3
312
Normal
0.3
861
Tumor
0.3
978
Normal
0.3
262
Normal
0.3
925
Tumor
0.3
538
Normal
0.3
956
Normal
0.3
857
Tumor
0.3
217
Tumor
0.3
343
Tumor
0.3
874
Normal
0.2
713
Tumor
0.2
516
Normal
0.2
813
Tumor
0.2
617
Tumor
0.2
545
Tumor
0.2
444
Normal
0.2
478
Normal
0.2
716
Normal
0.2
268
Normal
0.2
558
Normal
0.2
573
Tumor
0.2
517
Tumor
0.2
816
Normal
0.2
383
Tumor
0.2
867
Tumor
0.2
126
Normal
0.2
365
Tumor
0.2
524
Normal
0.2
1042
Normal
0.1
146
Normal
0.1
662
Normal
0.1
863
Tumor
0.1
328
Normal
0.1
187
Tumor
0.1
755
Tumor
0.1
395
Tumor
0.1
386
Normal
0.1
363
Tumor
0.1
483
Tumor
0.1
284
Normal
0.1
278
Normal
0.1
351
Tumor
0.1
1028
Normal
0.1
574
Normal
0.1
224
Normal
0.0
137
Tumor
0.0
391
Tumor
0.0
212
Normal
0.0
1032
Normal
0.0
976
Normal
0.0
913
Tumor
0.0
142
Normal
0.0
852
Normal
0.0
953
Tumor
0.0
277
Tumor
0.0
686
Normal
0.0
498
Normal
0.0
715
Tumor
0.0
272
Normal
0.0
1015
Tumor
0.0
387
Tumor
0.0
1045
Tumor
0.0
354
Normal
0.0
427
Tumor
0.0
671
Tumor
0.0
352
Normal
-0.1
924
Normal
-0.1
967
Tumor
-0.1
366
Normal
-0.1
818
Normal
-0.1
664
Normal
-0.1
868
Normal
-0.1
124
Normal
-0.1
362
Normal
-0.1
138
Normal
-0.1
914
Normal
-0.1
145
Tumor
-0.1
937
Tumor
-0.1
1016
Normal
-0.1
228
Normal
-0.1
474
Normal
-0.1
456
Normal
-0.1
952
Normal
-0.1
1044
Normal
-0.1
367
Tumor
-0.1
926
Normal
-0.1
951
Tumor
-0.1
332
Normal
-0.1
135
Tumor
-0.1
722
Normal
-0.1
384
Normal
-0.1
415
Tumor
-0.1
958
Normal
-0.1
161
Tumor
-0.2
663
Tumor
-0.2
984
Normal
-0.2
472
Normal
-0.2
884
Normal
-0.2
214
Normal
-0.2
918
Normal
-0.2
463
Tumor
-0.2
982
Normal
-0.2
756
Normal
-0.2
298
Normal
-0.2
546
Normal
-0.2
1046
Normal
-0.2
728
Normal
-0.2
314
Normal
-0.2
968
Normal
-0.2
221
Tumor
-0.2
114
Normal
-0.2
738
Normal
-0.2
666
Normal
-0.2
922
Normal
-0.2
364
Normal
-0.3
494
Normal
-0.3
778
Normal
-0.3
416
Normal
-0.3
468
Normal
-0.3
866
Normal
-0.3
746
Normal
-0.3
466
Normal
-0.3
785
Tumor
-0.3
1022
Normal
-0.3
628
Normal
-0.3
938
Normal
-0.3
921
Tumor
-0.3
954
Normal
-0.3
727
Tumor
-0.3
786
Normal
-0.3
353
Tumor
-0.3
525
Tumor
-0.3
923
Tumor
-0.3
218
Normal
-0.3
862
Normal
-0.3
514
Normal
-0.3
136
Normal
-0.3
568
Normal
-0.3
186
Normal
-0.4
111
Normal
-0.4
865
Tumor
-0.4
428
Normal
-0.4
285
Tumor
-0.4
882
Normal
-0.4
955
Tumor
-0.4
744
Normal
-0.4
572
Normal
-0.4
742
Normal
-0.4
714
Normal
-0.4
227
Tumor
-0.4
864
Normal
-0.4
433
Tumor
-0.4
564
Normal
-0.4
528
Normal
-0.4
422
Normal
-0.4
488
Normal
-0.4
696
Normal
-0.4
964
Normal
-0.4
424
Normal
-0.4
446
Normal
-0.4
518
Normal
-0.4
341
Tumor
-0.4
534
Normal
-0.4
858
Normal
-0.4
1026
Normal
-0.4
698
Normal
-0.4
448
Normal
-0.4
452
Normal
-0.4
331
Tumor
-0.4
878
Normal
-0.4
148
Normal
-0.4
464
Normal
-0.4
162
Normal
-0.5
462
Normal
-0.5
356
Normal
-0.5
412
Normal
-0.5
1025
Tumor
-0.5
392
Normal
-0.5
672
Normal
-0.5
824
Normal
-0.5
358
Normal
-0.5
286
Normal
-0.5
641
Tumor
-0.5
344
Normal
-0.5
271
Tumor
-0.5
553
Tumor
-0.5
723
Tumor
-0.5
113
Tumor
-0.5
232
Normal
-0.5
396
Normal
-0.6
648
Normal
-0.6
482
Normal
-0.6
665
Tumor
-0.6
342
Normal
-0.6
432
Normal
-0.6
368
Normal
-0.6
327
Tumor
-0.6
1014
Normal
-0.6
132
Normal
-0.6
196
Normal
-0.6
685
Tumor
-0.6
172
Normal
-0.6
484
Normal
-0.6
554
Normal
-0.6
526
Normal
-0.6
873
Tumor
-0.6
737
Tumor
-0.6
258
Normal
-0.6
376
Normal
-0.6
487
Tumor
-0.7
567
Tumor
-0.7
527
Tumor
-0.7
426
Normal
-0.7
394
Normal
-0.7
642
Normal
-0.7
388
Normal
-0.7
414
Normal
-0.7
912
Normal
-0.7
261
Tumor
-0.7
443
Tumor
-0.7
361
Tumor
-0.7
131
Tumor
-0.7
915
Tumor
-0.7
944
Normal
-0.7
257
Tumor
-0.7
497
Tumor
-0.8
618
Normal
-0.8
537
Tumor
-0.8
957
Tumor
-0.8
616
Normal
-0.8
523
Tumor
-0.8
627
Tumor
-0.8
436
Normal
-0.9
451
Tumor
-0.9
557
Tumor
-0.9
222
Normal
-0.9
977
Tumor
-0.9
267
Tumor
-0.9
313
Tumor
-0.9
911
Tumor
-0.9
571
Tumor
-1.0
231
Tumor
-1.0
1021
Tumor
-1.0
425
Tumor
-1.0
128
Normal
-1.0
636
Normal
-1.0
147
Tumor
-1.0
745
Tumor
-1.0
423
Tumor
-1.0
481
Tumor
-1.0
477
Tumor
-1.0
515
Tumor
-1.1
965
Tumor
-1.1
513
Tumor
-1.1
393
Tumor
-1.1
695
Tumor
-1.2
1041
Tumor
-1.2
615
Tumor
-1.2
431
Tumor
-1.2
741
Tumor
-1.2
357
Tumor
-1.2
1013
Tumor
-1.2
1027
Tumor
-1.3
647
Tumor
-1.3
465
Tumor
-1.3
411
Tumor
-1.4
473
Tumor
-1.4
777
Tumor
-1.4
127
Tumor
-1.4
533
Tumor
-1.5
445
Tumor
-1.5
171
Tumor
-1.5
112
Tumor
-1.5
743
Tumor
-1.6
981
Tumor
-1.6
635
Tumor
-1.7
123
Tumor
-2.0
435
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
