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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
782.5
nTPM
HPA Brain:
686.6
nTPM
GTEx:
782.5
nTPM
FANTOM5:
3790.5
Scaled Tags Per Million
Pig:
2005.7
nTPM
Mouse:
328.7
nTPM
Allen mouse:
15.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
686.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 518.2
2411
Female, age 72, unknown
775.1
1830
Male, age 51, unknown
751.8
1870
Female, age 42, unknown
678.5
1833
Male, age 53, unknown
667.1
2019
Male, age 18, unknown
577.7
2828
Female, age 72, unknown
484.6
2219
Male, age 76, both hemispheres
458.4
1827
Male, age 72, unknown
358.9
2666
Male, age 74, left hemisphere
272.1
2586
Male, age 75, left hemisphere
157.8
Dorsal raphe nucleus nTPM: 417.2
2750
Male, age 76, both hemispheres
804.9
2016
Female, age 72, unknown
403.4
1828
Male, age 53, unknown
357.5
2298
Female, age 72, unknown
262.7
2047
Male, age 72, unknown
257.4
Inferior colliculus nTPM: 388.9
1890
Male, age 53, unknown
445.9
2849
Male, age 72, unknown
406.7
1848
Female, age 42, unknown
393.6
2097
Female, age 72, unknown
309.2
Median raphe nucleus nTPM: 471.9
2220
Male, age 76, midline
471.9
Periaquaductal grey, anterior nTPM: 364.1
2502
Female, age 75, unknown
535.9
1947
Male, age 18, unknown
319.7
1795
Male, age 51, unknown
236.6
Periaquaductal grey, dorsal nTPM: 322.4
2464
Female, age 72, unknown
397.8
1831
Male, age 72, unknown
336.5
2850
Male, age 76, both hemispheres
329.5
1840
Male, age 53, unknown
225.6
Periaquaductal grey, lateral nTPM: 372.7
2272
Male, age 74, both hemispheres
471.1
2053
Male, age 18, unknown
353.3
2140
Male, age 76, both hemispheres
293.8
Pretectal area nTPM: 414.6
2667
Female, age 75, unknown
601.2
1815
Male, age 53, unknown
541.9
1817
Female, age 42, unknown
475.7
2316
Male, age 76, right hemisphere
464.8
2273
Male, age 74, both hemispheres
437.0
2407
Male, age 75, both hemispheres
403.7
2007
Male, age 72, unknown
384.4
2825
Male, age 18, unknown
367.1
1944
Female, age 72, unknown
330.3
2224
Female, age 72, unknown
323.5
1816
Male, age 51, unknown
231.2
Red nucleus nTPM: 686.6
1865
Male, age 51, unknown
1008.7
1821
Female, age 72, unknown
907.9
2823
Male, age 76, right hemisphere
881.1
1904
Male, age 53, unknown
790.1
2503
Female, age 72, unknown
757.0
2227
Male, age 72, unknown
700.6
2769
Male, age 72, unknown
690.8
2785
Male, age 18, unknown
689.9
1954
Female, age 42, unknown
680.7
2584
Male, age 75, left hemisphere
424.8
2588
Male, age 74, left hemisphere
421.1
2725
Female, age 75, unknown
285.7
Substantia nigra nTPM: 467.0
2699
Male, age 18, unknown
647.3
2409
Female, age 72, unknown
582.6
2590
Female, age 75, unknown
537.3
1851
Male, age 51, unknown
532.9
1889
Female, age 72, unknown
520.8
2241
Male, age 72, unknown
447.9
2583
Male, age 75, right hemisphere
390.2
1916
Female, age 42, unknown
365.3
2665
Male, age 74, both hemispheres
325.2
1941
Male, age 53, unknown
320.7
Superior colliculus nTPM: 463.7
1913
Female, age 42, unknown
707.2
1995
Male, age 72, unknown
677.2
2587
Male, age 74, left hemisphere
619.8
1895
Male, age 76, right hemisphere
615.0
1839
Male, age 51, unknown
494.6
1796
Male, age 53, unknown
364.3
2668
Female, age 75, unknown
351.8
2087
Female, age 72, unknown
348.2
2261
Male, age 18, unknown
279.3
2664
Male, age 75, both hemispheres
179.3
Ventral tegmental area nTPM: 534.7
2223
Female, age 72, unknown
708.1
2410
Female, age 72, unknown
649.7
2218
Male, age 76, both hemispheres
549.5
2021
Male, age 53, unknown
478.3
1915
Female, age 42, unknown
432.8
1942
Male, age 51, unknown
390.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
782.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 782.5
Samples: 139
Max nTPM: 2359.4
Min nTPM: 252.6
Std nTPM: 337.9
Median nTPM: 732.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2359.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2061.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1583.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1542.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1498.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1486.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1456.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1448.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1341.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1321.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1293.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1273.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1264.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1255.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1237.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1224.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1194.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1183.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1172.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1164.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1156.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1082.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1073.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1051.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1050.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1032.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
981.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
956.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
933.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
930.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
928.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
925.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
921.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
920.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
916.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
905.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
902.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
901.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
900.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
877.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
875.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
875.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
860.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
857.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
852.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
852.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
838.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
838.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
832.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
831.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
831.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
821.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
821.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
812.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
808.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
801.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
799.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
789.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
786.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
773.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
769.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
764.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
756.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
755.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
753.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
752.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
746.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
737.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
733.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
732.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
726.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
722.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
718.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
717.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
714.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
713.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
707.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
692.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
688.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
685.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
678.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
673.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
668.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
666.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
646.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
645.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
638.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
622.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
618.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
606.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
596.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
586.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
585.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
577.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
576.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
573.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
573.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
563.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
557.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
557.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
556.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
550.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
549.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
541.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
534.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
533.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
529.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
525.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
520.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
516.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
503.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
503.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
502.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
499.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
495.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
494.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
489.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
488.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
488.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
488.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
482.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
479.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
475.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
460.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
436.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
423.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
422.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
421.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
419.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
418.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
418.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
417.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
358.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
322.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
321.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
301.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
279.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
275.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
252.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
328.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 328.8
Samples: 4
Max nTPM: 345.1
Min nTPM: 311.8
Sample A
Male
345.1
Sample B
Male
331.5
Sample C
Female
326.7
Sample D
Female
311.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.