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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
657.1
nTPM
HPA Brain:
503.8
nTPM
GTEx:
657.1
nTPM
FANTOM5:
1202.5
Scaled Tags Per Million
Pig:
428.0
nTPM
Mouse:
146.4
nTPM
Allen mouse:
8.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040520
Glial cells
High
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
503.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 435.3
2621
Female, age 67, right hemisphere
552.0
2529
Female, age 94, left hemisphere
495.7
1898
Male, age 80, left hemisphere
481.8
1911
Female, age 85, right hemisphere
458.6
1855
Male, age 76, left hemisphere
371.9
2148
Female, age 91, left hemisphere
251.9
Dentate gyrus nTPM: 384.6
2530
Female, age 94, left hemisphere
532.6
2528
Male, age 74, both hemispheres
454.0
2010
Male, age 76, both hemispheres
366.7
2531
Female, age 67, both hemispheres
347.2
2246
Female, age 85, both hemispheres
346.4
1927
Female, age 91, both hemispheres
260.5
Entorhinal gyrus nTPM: 360.2
2117
Female, age 91, right hemisphere
503.6
1787
Male, age 76, left hemisphere
384.2
2764
Male, age 80, right hemisphere
350.0
1938
Female, age 85, left hemisphere
332.2
2613
Female, age 94, left hemisphere
305.5
2686
Male, age 75, right hemisphere
286.1
Hippocampus, CA1 nTPM: 310.0
2527
Male, age 74, both hemispheres
412.9
1873
Female, age 85, both hemispheres
372.2
2082
Female, age 91, right hemisphere
292.3
2045
Male, age 76, both hemispheres
246.3
2749
Male, age 80, left hemisphere
226.2
Hippocampus, CA2 nTPM: 408.8
2437
Female, age 94, left hemisphere
600.9
2249
Male, age 74, both hemispheres
483.2
1963
Male, age 80, left hemisphere
411.4
1940
Female, age 85, left hemisphere
344.8
2113
Female, age 91, right hemisphere
339.0
1892
Male, age 76, both hemispheres
273.3
Hippocampus, CA3 nTPM: 322.9
1891
Female, age 85, both hemispheres
496.3
2436
Male, age 74, both hemispheres
454.0
1867
Male, age 76, both hemispheres
390.9
2861
Female, age 67, both hemispheres
228.3
2137
Male, age 80, left hemisphere
215.2
2620
Female, age 94, left hemisphere
152.5
Parahippocampal cortex nTPM: 360.2
2018
Male, age 76, both hemispheres
487.4
2532
Female, age 72, left hemisphere
446.5
1990
Female, age 91, right hemisphere
421.5
1850
Male, age 80, both hemispheres
375.6
2692
Male, age 74, both hemispheres
371.1
1933
Female, age 85, both hemispheres
339.1
2245
Female, age 91, both hemispheres
338.3
2250
Female, age 67, right hemisphere
329.7
2693
Female, age 94, both hemispheres
311.3
2622
Female, age 67, right hemisphere
181.6
Perirhinal gyrus nTPM: 328.7
2521
Female, age 94, right hemisphere
499.8
1794
Male, age 80, right hemisphere
312.0
1841
Female, age 85, right hemisphere
306.6
1847
Female, age 91, left hemisphere
276.2
2848
Male, age 76, right hemisphere
248.9
Subiculum nTPM: 503.8
2438
Female, age 94, left hemisphere
645.7
2042
Male, age 76, both hemispheres
619.7
2619
Male, age 74, both hemispheres
477.2
1901
Male, age 80, both hemispheres
471.8
1977
Female, age 85, both hemispheres
447.1
2729
Female, age 91, right hemisphere
361.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
657.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 657.1
Samples: 197
Max nTPM: 1635.9
Min nTPM: 157.7
Std nTPM: 295.3
Median nTPM: 630.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1635.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1547.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1532.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1479.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1372.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1353.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1331.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1311.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1286.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1274.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1268.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1267.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1220.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1173.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1152.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1151.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1150.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
1113.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1026.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
1010.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1008.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
998.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
978.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
966.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
963.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
963.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
952.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
949.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
936.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
931.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
930.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
929.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
924.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
918.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
917.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
913.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
894.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
891.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
885.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
881.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
867.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
865.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
860.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
855.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
849.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
842.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
839.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
834.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
824.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
816.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
810.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
795.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
795.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
795.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
781.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
779.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
767.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
765.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
765.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
755.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
746.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
737.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
733.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
727.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
726.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
724.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
718.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
718.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
716.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
707.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
706.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
699.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
696.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
693.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
691.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
691.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
691.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
690.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
690.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
688.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
685.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
684.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
679.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
678.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
674.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
672.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
669.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
667.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
664.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
648.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
643.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
640.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
638.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
638.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
637.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
634.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
633.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
631.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
630.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
628.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
620.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
615.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
610.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
600.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
594.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
590.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
582.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
581.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
579.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
578.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
578.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
577.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
571.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
566.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
563.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
562.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
559.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
557.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
552.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
550.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
541.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
538.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
537.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
534.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
533.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
526.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
521.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
517.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
516.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
516.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
513.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
509.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
506.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
506.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
503.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
502.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
502.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
499.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
490.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
486.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
481.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
481.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
476.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
473.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
471.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
469.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
467.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
462.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
460.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
457.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
456.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
456.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
445.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
436.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
433.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
432.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
420.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
419.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
412.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
411.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
410.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
410.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
374.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
368.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
359.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
352.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
348.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
336.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
333.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
329.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
320.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
314.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
308.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
307.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
307.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
305.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
303.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
299.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
291.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
290.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
287.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
281.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
276.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
255.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
255.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
249.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
248.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
245.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
245.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
231.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
229.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
211.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
209.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
187.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
183.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
167.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
157.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 125.1
Samples: 4
Max nTPM: 140.5
Min nTPM: 106.4
Sample A
Male
140.5
Sample B
Male
106.4
Sample C
Female
140.4
Sample D
Female
113.1
Hippocampal formation nTPM: 146.4
Samples: 4
Max nTPM: 191.9
Min nTPM: 122.2
Sample A
Male
122.2
Sample B
Male
131.5
Sample C
Female
191.9
Sample D
Female
140.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.