MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA Brain:60.1 nTPM
GTEx:33.2 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:40.6 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.0
2586 Male, age 75, left hemisphere 78.8
2828 Female, age 72, unknown 58.8
2666 Male, age 74, left hemisphere 54.6
1827 Male, age 72, unknown 53.9
2019 Male, age 18, unknown 51.6
2411 Female, age 72, unknown 50.4
1870 Female, age 42, unknown 45.9
1830 Male, age 51, unknown 42.5
1833 Male, age 53, unknown 42.4
2219 Male, age 76, both hemispheres 41.5
Dorsal raphe nucleus
nTPM: 48.5
1828 Male, age 53, unknown 51.0
2298 Female, age 72, unknown 50.0
2047 Male, age 72, unknown 47.8
2016 Female, age 72, unknown 47.1
2750 Male, age 76, both hemispheres 46.5
Inferior colliculus
nTPM: 43.8
2097 Female, age 72, unknown 46.1
1890 Male, age 53, unknown 43.7
1848 Female, age 42, unknown 43.6
2849 Male, age 72, unknown 41.9
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Periaquaductal grey, anterior
nTPM: 60.1
2502 Female, age 75, unknown 66.1
1795 Male, age 51, unknown 60.1
1947 Male, age 18, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 42.4
1840 Male, age 53, unknown 48.3
2464 Female, age 72, unknown 46.5
1831 Male, age 72, unknown 40.5
2850 Male, age 76, both hemispheres 34.4
Periaquaductal grey, lateral
nTPM: 41.4
2053 Male, age 18, unknown 45.3
2140 Male, age 76, both hemispheres 40.5
2272 Male, age 74, both hemispheres 38.5
Pretectal area
nTPM: 50.9
2007 Male, age 72, unknown 61.8
1816 Male, age 51, unknown 59.9
1817 Female, age 42, unknown 57.5
1944 Female, age 72, unknown 54.8
1815 Male, age 53, unknown 51.6
2407 Male, age 75, both hemispheres 48.4
2667 Female, age 75, unknown 48.3
2825 Male, age 18, unknown 47.4
2316 Male, age 76, right hemisphere 47.0
2224 Female, age 72, unknown 42.5
2273 Male, age 74, both hemispheres 40.9
Red nucleus
nTPM: 48.3
2588 Male, age 74, left hemisphere 55.6
2584 Male, age 75, left hemisphere 55.4
2785 Male, age 18, unknown 54.7
2769 Male, age 72, unknown 50.8
2227 Male, age 72, unknown 49.9
2503 Female, age 72, unknown 49.2
1954 Female, age 42, unknown 47.1
1904 Male, age 53, unknown 46.0
1865 Male, age 51, unknown 44.0
1821 Female, age 72, unknown 43.9
2823 Male, age 76, right hemisphere 41.9
2725 Female, age 75, unknown 41.6
Substantia nigra
nTPM: 48.9
2665 Male, age 74, both hemispheres 59.7
1916 Female, age 42, unknown 54.2
1851 Male, age 51, unknown 53.9
2583 Male, age 75, right hemisphere 53.2
1941 Male, age 53, unknown 48.7
1889 Female, age 72, unknown 48.6
2590 Female, age 75, unknown 48.5
2699 Male, age 18, unknown 41.9
2241 Male, age 72, unknown 41.8
2409 Female, age 72, unknown 38.4
Superior colliculus
nTPM: 51.5
2664 Male, age 75, both hemispheres 72.3
2668 Female, age 75, unknown 55.6
2261 Male, age 18, unknown 55.2
2087 Female, age 72, unknown 54.4
1796 Male, age 53, unknown 54.1
1839 Male, age 51, unknown 47.4
1995 Male, age 72, unknown 45.8
1913 Female, age 42, unknown 45.5
2587 Male, age 74, left hemisphere 45.2
1895 Male, age 76, right hemisphere 39.0
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 50.6
1915 Female, age 42, unknown 49.0
2218 Male, age 76, both hemispheres 45.9
2021 Male, age 53, unknown 45.3
2223 Female, age 72, unknown 42.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 50.6
Min nTPM: 14.6
Std nTPM: 6.7
Median nTPM: 33.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 50.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 46.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 45.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 44.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 43.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 43.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.8
Sample A Female 23.0
Sample B Female 17.7
Sample C Male 21.4
Sample D Male 15.8
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 26.5
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 21.0
Sample C Male 26.5
Sample D Male 19.5
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 20.1
Min nTPM: 14.7
Sample B Female 19.9
Sample C Male 20.1
Sample D Male 14.7
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 26.3
Min nTPM: 20.4
Sample A Female 22.8
Sample B Female 23.4
Sample C Male 26.3
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 39.0
Sample A Male 43.3
Sample B Male 39.0
Sample C Female 39.7
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69095969 Antisense, RP_050324_02_F06, Mouse strain C57BL/6J (56 days, male) 1.6

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