MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:43.9 nTPM
GTEx:37.1 nTPM
FANTOM5:87.3 Scaled Tags Per Million
Pig:61.4 nTPM
Mouse:32.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
1830 Male, age 51, unknown 53.3
2411 Female, age 72, unknown 51.3
1870 Female, age 42, unknown 47.9
1833 Male, age 53, unknown 44.4
2019 Male, age 18, unknown 39.3
2586 Male, age 75, left hemisphere 36.6
2828 Female, age 72, unknown 34.1
2219 Male, age 76, both hemispheres 30.3
1827 Male, age 72, unknown 30.2
2666 Male, age 74, left hemisphere 27.9
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 53.7
2016 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 27.5
2047 Male, age 72, unknown 17.7
2298 Female, age 72, unknown 17.6
Inferior colliculus
nTPM: 24.1
1890 Male, age 53, unknown 26.8
1848 Female, age 42, unknown 24.2
2097 Female, age 72, unknown 22.9
2849 Male, age 72, unknown 22.4
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Periaquaductal grey, anterior
nTPM: 28.2
2502 Female, age 75, unknown 31.5
1947 Male, age 18, unknown 30.8
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 20.2
1831 Male, age 72, unknown 28.1
2464 Female, age 72, unknown 27.7
1840 Male, age 53, unknown 13.4
2850 Male, age 76, both hemispheres 11.4
Periaquaductal grey, lateral
nTPM: 23.9
2053 Male, age 18, unknown 32.3
2272 Male, age 74, both hemispheres 26.9
2140 Male, age 76, both hemispheres 12.6
Pretectal area
nTPM: 26.5
2407 Male, age 75, both hemispheres 42.8
1815 Male, age 53, unknown 33.7
2825 Male, age 18, unknown 32.7
2316 Male, age 76, right hemisphere 32.1
2273 Male, age 74, both hemispheres 27.0
2007 Male, age 72, unknown 23.7
1817 Female, age 42, unknown 22.3
1944 Female, age 72, unknown 20.9
2224 Female, age 72, unknown 20.6
2667 Female, age 75, unknown 18.7
1816 Male, age 51, unknown 17.7
Red nucleus
nTPM: 43.9
1865 Male, age 51, unknown 57.1
1821 Female, age 72, unknown 53.2
1904 Male, age 53, unknown 49.6
2584 Male, age 75, left hemisphere 46.5
2227 Male, age 72, unknown 45.3
2769 Male, age 72, unknown 45.2
2588 Male, age 74, left hemisphere 43.5
2503 Female, age 72, unknown 41.4
2823 Male, age 76, right hemisphere 39.1
2785 Male, age 18, unknown 38.8
1954 Female, age 42, unknown 38.1
2725 Female, age 75, unknown 29.0
Substantia nigra
nTPM: 33.3
2583 Male, age 75, right hemisphere 48.0
2590 Female, age 75, unknown 42.5
2409 Female, age 72, unknown 38.4
1851 Male, age 51, unknown 37.3
1889 Female, age 72, unknown 32.0
2241 Male, age 72, unknown 31.0
1941 Male, age 53, unknown 29.3
2699 Male, age 18, unknown 26.0
2665 Male, age 74, both hemispheres 25.9
1916 Female, age 42, unknown 22.7
Superior colliculus
nTPM: 36.1
1913 Female, age 42, unknown 53.1
1995 Male, age 72, unknown 48.5
2668 Female, age 75, unknown 47.8
2587 Male, age 74, left hemisphere 43.2
1839 Male, age 51, unknown 33.8
1895 Male, age 76, right hemisphere 33.7
2664 Male, age 75, both hemispheres 28.6
1796 Male, age 53, unknown 27.1
2261 Male, age 18, unknown 23.3
2087 Female, age 72, unknown 21.7
Ventral tegmental area
nTPM: 37.3
2223 Female, age 72, unknown 57.1
2410 Female, age 72, unknown 43.3
2021 Male, age 53, unknown 35.0
1942 Male, age 51, unknown 31.2
1915 Female, age 42, unknown 29.4
2218 Male, age 76, both hemispheres 27.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.1
Samples: 139

Max nTPM: 142.0
Min nTPM: 9.2
Std nTPM: 19.2
Median nTPM: 34.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 142.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 91.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 83.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 71.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 71.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 69.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 66.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 66.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.3
FF:10158-103A5 76 years, female 87.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 74.5
Min nTPM: 37.2
Sample A Female 50.3
Sample B Female 37.2
Sample C Male 40.2
Sample D Male 74.5
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 110.0
Min nTPM: 34.9
Sample A Female 110.0
Sample B Female 56.5
Sample C Male 44.2
Sample D Male 34.9
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 47.3
Min nTPM: 24.2
Sample B Female 47.3
Sample C Male 24.2
Sample D Male 34.7
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 45.8
Min nTPM: 28.0
Sample A Female 45.3
Sample B Female 28.0
Sample C Male 35.9
Sample D Male 45.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 32.0
Sample C Female 34.1
Sample D Female 33.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73513326 Antisense, RP_051121_01_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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